Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G5987 Trifolium pratense HOM05D003761 ORTHO05D004412 1.7e-111 406.0 197 100.0
Medtr4g133932 Medicago truncatula HOM05D003761 ORTHO05D004412 3.4e-80 302.0 202 77.2
Psat4g002880 Pisum sativum HOM05D003761 ORTHO05D004412 4.9e-79 298.1 201 76.6
Ca_20995_v3 Cicer arietinum L. HOM05D003761 ORTHO05D004412 9.6e-67 257.3 189 70.4
Glyma.17G005900 Glycine max HOM05D003761 ORTHO05D004412 1.8e-52 209.9 184 60.9
Lj4g0001357 Lotus japonicus HOM05D003761 ORTHO05D004412 5.6e-51 204.9 183 59.6
Lalb_Chr15g0088211 Lupinus albus HOM05D003761 ORTHO05D004412 1.3e-47 193.7 156 62.8
PGR042G2523 Punica granatum HOM05D003761 ORTHO05D004412 1.4e-46 190.3 201 50.2
Lj6g0023004 Lotus japonicus HOM05D003761 ORTHO05D004412 3.9e-44 182.2 179 55.3
Prupe.4G004300 Prunus persica HOM05D003761 ORTHO05D004412 1.1e-43 180.6 159 58.5
arahy.Tifrunner.gnm1.ann1.UZ71G8 Arachis hypogaea HOM05D003761 ORTHO05D004412 3.3e-43 179.1 170 52.9
arahy.Tifrunner.gnm1.ann1.YY2BB8 Arachis hypogaea HOM05D003761 ORTHO05D004412 7.4e-43 177.9 171 52.6
Atru.chr1.2273 Acer truncatum HOM05D003761 ORTHO05D004412 1.3e-42 177.2 203 50.7
CiPaw.09G108600 Carya illinoinensis HOM05D003761 ORTHO05D004412 3.7e-42 175.6 180 52.2
Cfa000041 Carpinus fangiana HOM05D003761 ORTHO05D004412 1.1e-41 174.1 195 52.3
Thecc.06G240300 Theobroma cacao HOM05D003761 ORTHO05D004412 1.1e-41 174.1 158 56.3
Phvul.003G086700 Phaseolus vulgaris HOM05D003761 ORTHO05D004412 1.8e-41 173.3 179 55.9
Haze_07014 Corylus avellana HOM05D003761 ORTHO05D004412 3.1e-41 172.6 197 52.3
MD10G1338600 Malus domestica HOM05D003761 ORTHO05D004412 3.1e-41 172.6 218 47.2
VMungo1215G0779 Vigna mungo HOM05D003761 ORTHO05D004412 4.0e-41 172.2 181 55.2
Eucgr.E03855 Eucalyptus grandis HOM05D003761 ORTHO05D004412 5.3e-41 171.8 163 54.0
CANSAT56G1869 Cannabis sativa HOM05D003761 ORTHO05D004412 6.9e-41 171.4 177 52.0
Ciclev10016770m.g Citrus clementina HOM05D003761 ORTHO05D004412 9.0e-41 171.0 193 52.3
Duzib192G0597 Durio zibethinus HOM05D003761 ORTHO05D004412 3.4e-40 169.1 154 55.2
Sabra06G0004500 Salix brachista HOM05D003761 ORTHO05D004412 4.5e-40 168.7 193 47.7
MD05G1360900 Malus domestica HOM05D003761 ORTHO05D004412 2.2e-39 166.4 168 51.8
Potri.006G005600 Populus trichocarpa HOM05D003761 ORTHO05D004412 2.9e-39 166.0 192 47.9
Potri.016G006200 Populus trichocarpa HOM05D003761 ORTHO05D004412 5.0e-39 165.2 192 47.4
FAN25G2178 Fragaria x ananassa HOM05D003761 ORTHO05D004412 6.5e-39 164.9 163 53.4
QL05p067831 Quercus lobata HOM05D003761 ORTHO05D004412 8.4e-39 164.5 197 47.7
FvH4_3g00370 Fragaria vesca HOM05D003761 ORTHO05D004412 5.5e-38 161.8 161 52.2
TWI38G2030 Tripterygium wilfordii HOM05D003761 ORTHO05D004412 7.1e-38 161.4 199 47.2
FAN21G2431 Fragaria x ananassa HOM05D003761 ORTHO05D004412 1.6e-37 160.2 163 51.5
Lalb_Chr13g0304361 Lupinus albus HOM05D003761 ORTHO05D004412 2.7e-37 159.5 137 60.6
Manes.09G083000 Manihot esculenta HOM05D003761 ORTHO05D004412 7.9e-37 157.9 182 48.4
Gohir.A06G204100 Gossypium hirsutum HOM05D003761 ORTHO05D004412 6.7e-36 154.8 159 49.7
Cpa.g.sc27.232 Carica papaya HOM05D003761 ORTHO05D004412 8.7e-36 154.5 159 51.6
Gorai.010G248800 Gossypium raimondii HOM05D003761 ORTHO05D004412 1.9e-35 153.3 158 50.6
COL.COLO4_31936 Corchorus olitorius HOM05D003761 ORTHO05D004412 4.3e-35 152.1 146 52.1
CsaV3_1G015780 Cucumis sativus L. HOM05D003761 ORTHO05D004412 4.3e-35 152.1 191 45.5
CsaV3_UNG065500 Cucumis sativus L. HOM05D003761 ORTHO05D004412 4.3e-35 152.1 191 45.5
Sed0014180 Sechium edule HOM05D003761 ORTHO05D004412 7.4e-35 151.4 185 45.4
Gohir.D06G217400 Gossypium hirsutum HOM05D003761 ORTHO05D004412 9.7e-35 151.0 158 50.0
GSVIVG01005138001 Vitis vinifera HOM05D003761 ORTHO05D004412 6.3e-34 148.3 152 49.3
MELO3C025526.2 Cucumis melo HOM05D003761 ORTHO05D004412 1.4e-33 147.1 184 45.1
TWI38G1412 Tripterygium wilfordii HOM05D003761 ORTHO05D004412 1.8e-33 146.7 198 45.5
Sabra16G0011000 Salix brachista HOM05D003761 ORTHO05D004412 4.1e-33 145.6 149 50.3
Sed0021615 Sechium edule HOM05D003761 ORTHO05D004412 1.2e-32 144.1 200 39.0
ClCG01G010750 Citrullus lanatus HOM05D003761 ORTHO05D004412 1.5e-32 143.7 192 44.3
Eucgr.L00155 Eucalyptus grandis HOM05D003761 ORTHO05D004412 2.0e-32 143.3 141 50.4
CSS0009294 Camellia sinensis var. sinensis HOM05D003761 ORTHO05D004412 2.9e-31 139.4 156 50.0
CSS0045719 Camellia sinensis var. sinensis HOM05D003761 ORTHO05D004412 2.9e-31 139.4 156 50.0
Eucgr.L00154 Eucalyptus grandis HOM05D003761 ORTHO05D004412 1.9e-30 136.7 141 48.9
Lj2C256G8 Lonicera japonica HOM05D003761 ORTHO05D004412 2.5e-30 136.3 135 51.9
TAR626G0912 Trochodendron aralioides HOM05D003761 ORTHO05D004412 3.2e-30 136.0 180 45.6
DCAR_030834 Daucus carota HOM05D003761 ORTHO05D004412 2.1e-29 133.3 168 46.4
Actinidia11903 Actinidia chinensis HOM05D003761 ORTHO05D004412 4.6e-29 132.1 177 43.5
CDE10G1059 Ceratophyllum demersum HOM05D003761 ORTHO05D004412 1.0e-28 131.0 144 47.9
AUR62021816 Chenopodium quinoa HOM05D003761 ORTHO05D004412 1.0e-28 131.0 146 50.0
Hma1.2p1_1175F.1_g263990 Hydrangea macrophylla HOM05D003761 ORTHO05D004412 1.0e-28 131.0 187 42.2
Actinidia39257 Actinidia chinensis HOM05D003761 ORTHO05D004412 2.3e-28 129.8 137 52.6
MSTRG.14590 Avicennia marina HOM05D003761 ORTHO05D004412 2.3e-28 129.8 157 47.8
MBI18_g42884_MAGBIO Magnolia biondii HOM05D003761 ORTHO05D004412 2.3e-28 129.8 143 48.3
vmacro03612 Vaccinium macrocarpon HOM05D003761 ORTHO05D004412 3.0e-28 129.4 181 42.5
HPP92_024936 Vanilla planifolia HOM05D003761 ORTHO05D004412 5.1e-28 128.6 141 48.2
Rhsim13G0141000 Rhododendron simsii HOM05D003761 ORTHO05D004412 6.7e-28 128.3 182 43.4
HPP92_024932 Vanilla planifolia HOM05D003761 ORTHO05D004412 8.8e-28 127.9 141 47.5
Sc24g0000400 Simmondsia chinensis HOM05D003761 ORTHO05D004412 1.1e-27 127.5 127 51.2
EL10Ac8g20260 Beta vulgaris HOM05D003761 ORTHO05D004412 4.3e-27 125.6 220 37.3
Nn1g07502 Nelumbo nucifera HOM05D003761 ORTHO05D004412 4.3e-27 125.6 142 46.5
AUR62012843 Chenopodium quinoa HOM05D003761 ORTHO05D004412 5.7e-27 125.2 147 49.0
Lsat_1_v5_gn_7_13080 Lactuca sativa HOM05D003761 ORTHO05D004412 5.7e-27 125.2 139 46.0
Dinv15342 Davidia involucrata HOM05D003761 ORTHO05D004412 9.7e-27 124.4 127 49.6
Actinidia02285 Actinidia chinensis HOM05D000829 ORTHO05D000690 3.7e-26 122.5 133 50.4
PSO675G1588 Papaver somniferum HOM05D003761 ORTHO05D004412 6.3e-26 121.7 189 36.5
PGR004G2813 Punica granatum HOM05D003761 ORTHO05D004412 8.2e-26 121.3 184 39.1
HanXRQChr15g0470241 Helianthus annuus HOM05D003761 ORTHO05D004412 1.4e-25 120.6 130 44.6
MBI18_g27019_MAGBIO Magnolia biondii HOM05D003761 ORTHO05D004412 1.8e-25 120.2 133 47.4
Oeu057021.1 Olea europaea HOM05D003761 ORTHO05D004412 2.4e-25 119.8 135 48.1
vmacro03611 Vaccinium macrocarpon HOM05D003761 ORTHO05D004412 3.1e-25 119.4 156 42.9
vmacro23224 Vaccinium macrocarpon HOM05D003761 ORTHO05D004412 3.1e-25 119.4 156 42.9
Oeu025960.1 Olea europaea HOM05D003761 ORTHO05D004412 4.1e-25 119.0 164 40.9
MSTRG.13107 Avicennia marina HOM05D003761 ORTHO05D004412 5.3e-25 118.6 193 39.9
THA.LOC104806736 Tarenaya hassleriana HOM05D003761 ORTHO05D004412 6.9e-25 118.2 135 47.4
PSO541G3650 Papaver somniferum HOM05D003761 ORTHO05D004412 9.1e-25 117.9 189 36.5
SalBow8G1906 Salvia bowleyana HOM05D003761 ORTHO05D004412 1.5e-24 117.1 139 48.9
MSTRG.7132 Avicennia marina HOM05D003761 ORTHO05D004412 3.4e-24 115.9 168 41.1
Aqoxy4G01086 Aquilegia oxysepala HOM05D003761 ORTHO05D004412 4.5e-24 115.5 187 38.5
AT5G47635 Arabidopsis thaliana HOM05D003761 ORTHO05D004412 1.3e-23 114.0 147 44.9
Lsat_1_v5_gn_1_130120 Lactuca sativa HOM05D003761 ORTHO05D004412 1.3e-23 114.0 165 39.4
Sp2g12340 Schrenkiella parvula HOM05D003761 ORTHO05D004412 1.7e-23 113.6 141 47.5
Aa31LG5G19480 Aethionema arabicum HOM05D003761 ORTHO05D004412 2.2e-23 113.2 133 45.9
SGA_v2.0_scaffold7G03701 Striga asiatica HOM05D003761 ORTHO05D004412 2.2e-23 113.2 179 40.2
AL8G10320 Arabidopsis lyrata HOM05D003761 ORTHO05D004412 2.9e-23 112.8 175 38.9
BcaNung03472 Brassica carinata HOM05D003761 ORTHO05D004412 2.9e-23 112.8 135 45.9
MBI19_g14888_MAGBIO Magnolia biondii HOM05D003761 ORTHO05D004412 2.9e-23 112.8 126 47.6
Sp7g16980 Schrenkiella parvula HOM05D003761 ORTHO05D004412 2.9e-23 112.8 135 45.2
SGA_v2.0_scaffold49G18223 Striga asiatica HOM05D003761 ORTHO05D004412 2.9e-23 112.8 169 42.6
BcaC06g31357 Brassica carinata HOM05D003761 ORTHO05D004412 3.8e-23 112.5 136 47.1
Carub.0007s2420 Capsella rubella HOM05D003761 ORTHO05D004412 5.0e-23 112.1 142 46.5
CARHR173680 Cardamine hirsuta HOM05D003761 ORTHO05D004412 5.0e-23 112.1 139 44.6
BcaC09g50449 Brassica carinata HOM05D003761 ORTHO05D004412 6.5e-23 111.7 166 44.0
C01p25300 Brassica napus HOM05D003761 ORTHO05D004412 6.5e-23 111.7 166 44.0
ECA248G3040 Erigeron canadensis HOM05D003761 ORTHO05D004412 6.5e-23 111.7 176 39.8
Oeu002779.1 Olea europaea HOM05D003761 ORTHO05D004412 6.5e-23 111.7 182 41.2
Sopen11g006960 Solanum pennellii HOM05D003761 ORTHO05D004412 6.5e-23 111.7 147 45.6
A09p23140 Brassica napus HOM05D003761 ORTHO05D004412 8.5e-23 111.3 133 45.1
BraA09t37917Z Brassica rapa HOM05D003761 ORTHO05D004412 8.5e-23 111.3 133 45.1
AL7G37500 Arabidopsis lyrata HOM05D003761 ORTHO05D004412 1.1e-22 110.9 135 46.7
Carub.0008s0015 Capsella rubella HOM05D003761 ORTHO05D004412 1.1e-22 110.9 137 45.3
AT4G17215 Arabidopsis thaliana HOM05D003761 ORTHO05D004412 1.9e-22 110.2 135 47.4
Migut.H01629 Erythranthe guttata HOM05D003761 ORTHO05D004412 2.5e-22 109.8 137 46.0
Peaxi162Scf00558g00515 Petunia axillaris HOM05D003761 ORTHO05D004412 2.5e-22 109.8 148 43.2
Aa31LG2G12410 Aethionema arabicum HOM05D003761 ORTHO05D004412 4.2e-22 109.0 127 43.3
SGA_v2.0_scaffold186G40120 Striga asiatica HOM05D003761 ORTHO05D004412 4.2e-22 109.0 138 44.2
BcaB07g30768 Brassica carinata HOM05D003761 ORTHO05D004412 5.5e-22 108.6 142 43.0
Thhalv10026465m.g Eutrema salsugineum HOM05D003761 ORTHO05D004412 5.5e-22 108.6 135 45.2
Aa31LG9G5380 Aethionema arabicum HOM05D003761 ORTHO05D004412 7.2e-22 108.2 140 46.4
BolC1t02480H Brassica oleracea HOM05D003761 ORTHO05D004412 7.2e-22 108.2 166 43.4
Oeu025400.1 Olea europaea HOM05D003761 ORTHO05D004412 7.2e-22 108.2 139 41.0
BcaC06g33549 Brassica carinata HOM05D003761 ORTHO05D004412 9.4e-22 107.8 132 47.7
A03p50350 Brassica napus HOM05D003761 ORTHO05D004412 9.4e-22 107.8 132 47.7
C07p48660 Brassica napus HOM05D003761 ORTHO05D004412 9.4e-22 107.8 132 47.7
BolC7t45373H Brassica oleracea HOM05D003761 ORTHO05D004412 9.4e-22 107.8 132 47.7
BraA03t14124Z Brassica rapa HOM05D003761 ORTHO05D004412 9.4e-22 107.8 132 47.7
Thhalv10001056m.g Eutrema salsugineum HOM05D003761 ORTHO05D004412 9.4e-22 107.8 142 43.7
A06p44900 Brassica napus HOM05D003761 ORTHO05D004412 1.2e-21 107.5 141 45.4
BraA06t27361Z Brassica rapa HOM05D003761 ORTHO05D004412 1.2e-21 107.5 141 45.4
CAN.G1186.30 Capsicum annuum HOM05D003761 ORTHO05D004412 2.1e-21 106.7 151 40.4
Os10g0208600 Oryza sativa ssp. japonica HOM05D003761 ORTHO05D004412 2.1e-21 106.7 141 41.8
BraA01t01941Z Brassica rapa HOM05D003761 ORTHO05D004412 3.6e-21 105.9 138 46.4
CARHR223820 Cardamine hirsuta HOM05D003761 ORTHO05D004412 3.6e-21 105.9 135 44.4
Solyc11g012170.1 Solanum lycopersicum HOM05D003761 ORTHO05D004412 3.6e-21 105.9 141 46.1
Nitab4.5_0001198g0070 Nicotiana tabacum HOM05D003761 ORTHO05D004412 4.7e-21 105.5 130 41.5
Migut.M01442 Erythranthe guttata HOM05D003761 ORTHO05D004412 7.9e-21 104.8 144 41.7
HanXRQChr01g0003591 Helianthus annuus HOM05D003761 ORTHO05D004412 7.9e-21 104.8 134 40.3
BcaNung03474 Brassica carinata HOM05D003761 ORTHO05D004412 1.0e-20 104.4 132 47.7
Ah.09g233900 Amaranthus hybridus HOM05D003761 ORTHO05D004412 1.4e-20 104.0 156 38.5
BcaC04g21612 Brassica carinata HOM05D003761 ORTHO05D004412 1.4e-20 104.0 136 43.4
C09p29870 Brassica napus HOM05D003761 ORTHO05D004412 1.4e-20 104.0 136 43.4
THA.LOC104798379 Tarenaya hassleriana HOM05D003761 ORTHO05D004412 1.8e-20 103.6 133 45.1
Carub.0004s2229 Capsella rubella HOM05D003761 ORTHO05D004412 2.3e-20 103.2 165 40.6
Nitab4.5_0000143g0280 Nicotiana tabacum HOM05D003761 ORTHO05D004412 2.3e-20 103.2 135 43.0
PGSC0003DMG400013274 Solanum tuberosum HOM05D003761 ORTHO05D004412 2.3e-20 103.2 141 45.4
BcaC06g34236 Brassica carinata HOM05D003761 ORTHO05D004412 3.0e-20 102.8 147 42.9
A05p06360 Brassica napus HOM05D003761 ORTHO05D004412 3.0e-20 102.8 139 44.6
BraA05t19604Z Brassica rapa HOM05D003761 ORTHO05D004412 3.0e-20 102.8 139 44.6
BcaB02g09050 Brassica carinata HOM05D003761 ORTHO05D004412 3.9e-20 102.4 139 43.9
BolC4t22355H Brassica oleracea HOM05D003761 ORTHO05D004412 3.9e-20 102.4 139 43.9
C07p31280 Brassica napus HOM05D003761 ORTHO05D004412 5.1e-20 102.1 146 44.5
Thhalv10017342m.g Eutrema salsugineum HOM05D003761 ORTHO05D004412 5.1e-20 102.1 134 44.0
BolC7t43669H Brassica oleracea HOM05D003761 ORTHO05D004412 8.8e-20 101.3 137 44.5
Cc09_g00350 Coffea canephora HOM05D003761 ORTHO05D004412 1.1e-19 100.9 142 43.7
BcaB02g09051 Brassica carinata HOM05D003761 ORTHO05D004412 2.0e-19 100.1 139 43.9
BcaNung00112 Brassica carinata HOM05D003761 ORTHO05D004412 3.3e-19 99.4 122 45.9
Sp4g22430 Schrenkiella parvula HOM05D003761 ORTHO05D004412 4.4e-19 99.0 133 42.1
Sopen11g007440 Solanum pennellii HOM05D003761 ORTHO05D004412 4.4e-19 99.0 171 37.4
AL4G37770 Arabidopsis lyrata HOM05D003761 ORTHO05D004412 5.7e-19 98.6 134 44.0
BcaB06g29129 Brassica carinata HOM05D003761 ORTHO05D004412 5.7e-19 98.6 133 43.6
BolC4t28284H Brassica oleracea HOM05D003761 ORTHO05D004412 7.4e-19 98.2 133 43.6
Solyc11g012705.2 Solanum lycopersicum HOM05D003761 ORTHO05D004412 9.7e-19 97.8 171 37.4
AT2G40113 Arabidopsis thaliana HOM05D003761 ORTHO05D004412 1.3e-18 97.4 141 41.8
unitig_52.g17560 Utricularia gibba HOM05D003761 ORTHO05D004412 2.2e-18 96.7 162 37.7
Hma1.2p1_1175F.1_g263980 Hydrangea macrophylla HOM05D003761 ORTHO05D004412 6.3e-18 95.1 92 54.3
A04p30050 Brassica napus HOM05D003761 ORTHO05D004412 8.2e-18 94.7 133 42.1
BcaC02g07354 Brassica carinata HOM05D003761 ORTHO05D004412 1.1e-17 94.4 133 41.4
CAN.G1156.14 Capsicum annuum HOM05D003761 ORTHO05D004412 1.4e-17 94.0 140 38.6
BraA04t18501Z Brassica rapa HOM05D003761 ORTHO05D004412 1.8e-17 93.6 133 41.4
PGSC0003DMG400013298 Solanum tuberosum HOM05D003761 ORTHO05D004412 1.8e-17 93.6 171 35.7
CARHR135090 Cardamine hirsuta HOM05D003761 ORTHO05D004412 4.1e-17 92.4 139 41.7
Os10g0206500 Oryza sativa ssp. japonica HOM05D003761 ORTHO05D004412 4.1e-17 92.4 141 39.7
Peaxi162Scf00442g00073 Petunia axillaris HOM05D003761 ORTHO05D004412 4.1e-17 92.4 141 40.4
Sc05g0009870 Simmondsia chinensis HOM05D003761 ORTHO05D004412 3.5e-16 89.4 98 41.8
Cpa.g.sc27.234 Carica papaya HOM05D003761 ORTHO05D004412 1.0e-15 87.8 96 46.9
ATR0827G170 Amborella trichopoda HOM05D003761 ORTHO05D004412 1.7e-15 87.0 116 38.8
Zm00001eb050510 Zea mays HOM05D003761 ORTHO05D004412 3.8e-15 85.9 144 37.5
BolC9t55850H Brassica oleracea HOM05D003761 ORTHO05D004412 2.4e-09 66.6 130 33.1
C04p67800 Brassica napus HOM05D003761 ORTHO05D004412 5.9e-08 62.0 74 44.6
RcHm_v2.0_Chr5g0000571 Rosa chinensis HOM05D003761 ORTHO05D004412 1.7e-07 60.5 71 43.7
SEGI_28043 Sequoiadendron giganteum HOM05D003761 ORTHO05D004412 5.0e-07 58.9 88 34.1


User provided reference genes

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