Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G5981 Trifolium pratense HOM05D004340 ORTHO05D006363 0.0e+00 1719.5 896 100.0
Medtr4g082150 Medicago truncatula HOM05D004340 ORTHO05D006363 0.0e+00 1332.4 888 79.2
TPR.G34046 Trifolium pratense HOM05D004340 ORTHO05D006363 0.0e+00 1329.3 888 78.8
Medtr4g082265 Medicago truncatula HOM05D004340 ORTHO05D006363 0.0e+00 1327.8 888 79.2
Medtr7g021880 Medicago truncatula HOM05D004340 ORTHO05D006363 0.0e+00 1320.1 904 78.2
Ca_18821_v3 Cicer arietinum L. HOM05D004340 ORTHO05D006363 0.0e+00 1307.0 888 77.6
Phvul.001G233800 Phaseolus vulgaris HOM05D004340 ORTHO05D006363 0.0e+00 1236.9 888 73.4
VMungo1383G3199 Vigna mungo HOM05D004340 ORTHO05D006363 0.0e+00 1232.2 888 73.3
Glyma.11G220500 Glycine max HOM05D004340 ORTHO05D006363 0.0e+00 1231.1 888 73.2
Glyma.18G036900 Glycine max HOM05D004340 ORTHO05D006363 0.0e+00 1222.2 888 72.4
Lj4g0013877 Lotus japonicus HOM05D004340 ORTHO05D006363 0.0e+00 1200.7 880 73.2
arahy.Tifrunner.gnm1.ann1.AR8P07 Arachis hypogaea HOM05D004340 ORTHO05D006363 0.0e+00 1178.7 887 71.0
arahy.Tifrunner.gnm1.ann1.MXBT1J Arachis hypogaea HOM05D004340 ORTHO05D006363 0.0e+00 1167.1 887 70.7
Ca_29729_v3 Cicer arietinum L. HOM05D004340 ORTHO05D006363 0.0e+00 1120.9 664 86.1
Lj1g0001827 Lotus japonicus HOM05D004340 ORTHO05D006363 0.0e+00 1098.2 893 67.3
QL03p068099 Quercus lobata HOM05D004340 ORTHO05D006363 0.0e+00 1088.6 890 65.8
Dinv16674 Davidia involucrata HOM05D004340 ORTHO05D006363 0.0e+00 1076.2 887 65.1
Thecc.02G342300 Theobroma cacao HOM05D004340 ORTHO05D006363 7.9e-310 1067.0 881 64.6
Cfa008953 Carpinus fangiana HOM05D004340 ORTHO05D006363 2.0e-305 1052.4 882 64.4
Gorai.013G087900 Gossypium raimondii HOM05D004340 ORTHO05D006363 1.0e-304 1050.0 884 64.0
TAR629G2604 Trochodendron aralioides HOM05D004340 ORTHO05D006363 2.2e-304 1048.9 887 62.9
Prupe.1G035400 Prunus persica HOM05D004340 ORTHO05D006363 1.1e-303 1046.6 891 63.2
CANSAT64G1884 Cannabis sativa HOM05D004340 ORTHO05D006363 1.9e-303 1045.8 893 63.7
Gohir.A13G077700 Gossypium hirsutum HOM05D004340 ORTHO05D006363 1.6e-302 1042.7 880 64.2
Gohir.D13G076900 Gossypium hirsutum HOM05D004340 ORTHO05D006363 2.1e-302 1042.3 884 63.8
Atru.chr11.1746 Acer truncatum HOM05D004340 ORTHO05D006363 3.6e-302 1041.6 890 62.4
Haze_11982 Corylus avellana HOM05D004340 ORTHO05D006363 4.6e-302 1041.2 909 62.7
GSVIVG01019948001 Vitis vinifera HOM05D004340 ORTHO05D006363 6.1e-302 1040.8 887 63.5
RcHm_v2.0_Chr4g0439421 Rosa chinensis HOM05D004340 ORTHO05D006363 3.9e-301 1038.1 887 62.5
MD16G1069200 Malus domestica HOM05D004340 ORTHO05D006363 2.8e-299 1031.9 886 62.3
Atru.chr10.1247 Acer truncatum HOM05D004340 ORTHO05D006363 4.8e-299 1031.2 890 62.2
FvH4_5g29350 Fragaria vesca HOM05D004340 ORTHO05D006363 3.1e-298 1028.5 874 62.8
FAN04G3196 Fragaria x ananassa HOM05D004340 ORTHO05D006363 8.5e-296 1020.4 879 62.3
PGR102G3073 Punica granatum HOM05D004340 ORTHO05D006363 1.2e-294 1016.5 888 62.8
Ciclev10030675m.g Citrus clementina HOM05D004340 ORTHO05D006363 6.7e-293 1010.7 889 61.3
Rhsim10G0119600 Rhododendron simsii HOM05D004340 ORTHO05D006363 2.6e-292 1008.8 904 60.5
vmacro05308 Vaccinium macrocarpon HOM05D004340 ORTHO05D006363 2.6e-292 1008.8 890 61.5
Manes.01G034000 Manihot esculenta HOM05D004340 ORTHO05D006363 4.4e-292 1008.1 889 62.0
CSS0018825 Camellia sinensis var. sinensis HOM05D004340 ORTHO05D006363 1.3e-291 1006.5 888 61.1
Psat7g160080 Pisum sativum HOM05D004340 ORTHO05D006363 1.4e-290 1003.0 683 77.5
FAN13G0065 Fragaria x ananassa HOM05D004340 ORTHO05D006363 3.1e-290 1001.9 874 61.6
FAN18G2257 Fragaria x ananassa HOM05D004340 ORTHO05D006363 3.5e-289 998.4 874 61.4
TWI79G0307 Tripterygium wilfordii HOM05D004340 ORTHO05D006363 6.5e-288 994.2 883 62.2
Potri.008G089600 Populus trichocarpa HOM05D004340 ORTHO05D006363 3.2e-287 991.9 886 62.0
Lalb_Chr05g0220271 Lupinus albus HOM05D004340 ORTHO05D006363 1.6e-286 989.6 751 71.4
Aqoxy3G03456 Aquilegia oxysepala HOM05D004340 ORTHO05D006363 4.7e-286 988.0 884 60.0
CAN.G1335.16 Capsicum annuum HOM05D004340 ORTHO05D006363 4.7e-286 988.0 890 60.2
Sopen05g003610 Solanum pennellii HOM05D004340 ORTHO05D006363 1.1e-284 983.4 886 59.5
PGSC0003DMG400018437 Solanum tuberosum HOM05D004340 ORTHO05D006363 4.4e-284 981.5 886 59.4
Eucgr.I00217 Eucalyptus grandis HOM05D004340 ORTHO05D006363 7.5e-284 980.7 865 61.4
Solyc05g007750.4 Solanum lycopersicum HOM05D004340 ORTHO05D006363 3.7e-283 978.4 886 59.4
Sc11g0002100 Simmondsia chinensis HOM05D004340 ORTHO05D006363 6.3e-283 977.6 890 59.9
Peaxi162Scf00222g00716 Petunia axillaris HOM05D004340 ORTHO05D006363 7.0e-282 974.2 881 59.7
Nitab4.5_0000040g0090 Nicotiana tabacum HOM05D004340 ORTHO05D006363 5.9e-281 971.1 913 58.3
THA.LOC104801804 Tarenaya hassleriana HOM05D004340 ORTHO05D006363 7.7e-281 970.7 891 59.8
CsaV3_5G025240 Cucumis sativus L. HOM05D004340 ORTHO05D006363 1.3e-280 969.9 891 59.4
MELO3C002960.2 Cucumis melo HOM05D004340 ORTHO05D006363 1.7e-280 969.5 891 59.0
Nn4g23232 Nelumbo nucifera HOM05D004340 ORTHO05D006363 2.2e-280 969.1 880 60.6
Cc11_g12720 Coffea canephora HOM05D004340 ORTHO05D006363 2.5e-279 965.7 887 59.2
Sabra08G0067000 Salix brachista HOM05D004340 ORTHO05D006363 1.2e-278 963.4 886 61.1
Hund25218 Selenicereus undatus HOM05D004340 ORTHO05D006363 3.0e-277 958.7 889 59.2
Carub.0003s2628 Capsella rubella HOM05D004340 ORTHO05D006363 4.0e-277 958.4 888 59.7
PSO063G1986 Papaver somniferum HOM05D004340 ORTHO05D006363 4.0e-277 958.4 888 59.1
AUR62005824 Chenopodium quinoa HOM05D004340 ORTHO05D006363 5.2e-277 958.0 889 58.6
EL10Ac6g13244 Beta vulgaris HOM05D004340 ORTHO05D006363 9.8e-276 953.7 881 59.4
AT2G04660 Arabidopsis thaliana HOM05D004340 ORTHO05D006363 2.2e-275 952.6 888 59.3
AL3G42300 Arabidopsis lyrata HOM05D004340 ORTHO05D006363 4.8e-275 951.4 888 58.9
Nitab4.5_0004300g0030 Nicotiana tabacum HOM05D004340 ORTHO05D006363 4.8e-275 951.4 916 57.1
AUR62032818 Chenopodium quinoa HOM05D004340 ORTHO05D006363 8.3e-275 950.7 889 58.3
Lsat_1_v5_gn_8_50141 Lactuca sativa HOM05D004340 ORTHO05D006363 1.4e-274 949.9 881 58.8
Lj3A1035G45 Lonicera japonica HOM05D004340 ORTHO05D006363 1.8e-274 949.5 914 57.2
Thhalv10027638m.g Eutrema salsugineum HOM05D004340 ORTHO05D006363 4.1e-274 948.3 889 59.1
PSO832G0091 Papaver somniferum HOM05D004340 ORTHO05D006363 4.1e-274 948.3 920 57.3
Sp7g01960 Schrenkiella parvula HOM05D004340 ORTHO05D006363 5.4e-274 948.0 888 59.2
Migut.L01267 Erythranthe guttata HOM05D004340 ORTHO05D006363 1.2e-273 946.8 883 58.8
CARHR261990 Cardamine hirsuta HOM05D004340 ORTHO05D006363 2.2e-272 942.6 889 58.8
DCAR_027428 Daucus carota HOM05D004340 ORTHO05D006363 5.0e-272 941.4 891 58.6
ClCG09G021920 Citrullus lanatus HOM05D004340 ORTHO05D006363 2.6e-268 929.1 891 57.5
HanXRQChr12g0362121 Helianthus annuus HOM05D004340 ORTHO05D006363 2.6e-268 929.1 888 58.4
SGA_v2.0_scaffold172G38951 Striga asiatica HOM05D004340 ORTHO05D006363 2.6e-268 929.1 883 58.1
MSTRG.717 Avicennia marina HOM05D004340 ORTHO05D006363 3.4e-268 928.7 890 58.0
SalBow2G1648 Salvia bowleyana HOM05D004340 ORTHO05D006363 4.4e-268 928.3 919 56.7
CiPaw.05G131900 Carya illinoinensis HOM05D004340 ORTHO05D006363 8.3e-267 924.1 751 66.8
Aa31LG10G13720 Aethionema arabicum HOM05D004340 ORTHO05D006363 1.2e-265 920.2 941 55.0
COL.COLO4_27998 Corchorus olitorius HOM05D004340 ORTHO05D006363 1.0e-264 917.1 873 58.5
BcaC03g13079 Brassica carinata HOM05D004340 ORTHO05D006363 2.3e-264 916.0 879 57.1
BcaB05g21922 Brassica carinata HOM05D004340 ORTHO05D006363 2.1e-262 909.4 879 57.5
BraA02t04684Z Brassica rapa HOM05D004340 ORTHO05D006363 6.8e-261 904.4 881 57.0
BolC2t06011H Brassica oleracea HOM05D004340 ORTHO05D006363 3.4e-260 902.1 879 56.5
Ah.03g134830 Amaranthus hybridus HOM05D004340 ORTHO05D006363 7.5e-260 901.0 939 54.3
Sed0000698 Sechium edule HOM05D004340 ORTHO05D006363 1.7e-256 889.8 891 57.0
C04p46590 Brassica napus HOM05D004340 ORTHO05D006363 5.8e-252 874.8 886 56.0
BolC4t26245H Brassica oleracea HOM05D004340 ORTHO05D006363 2.4e-250 869.4 889 55.7
BcaB06g27417 Brassica carinata HOM05D004340 ORTHO05D006363 1.7e-248 863.2 890 54.9
Cpa.g.sc1.50 Carica papaya HOM05D004340 ORTHO05D006363 2.5e-247 859.4 779 60.3
BraA04t16952Z Brassica rapa HOM05D004340 ORTHO05D006363 1.8e-245 853.2 876 54.8
Aqoxy3G02559 Aquilegia oxysepala HOM05D004340 ORTHO05D006363 2.2e-243 846.3 883 53.0
Zm00001eb227040 Zea mays HOM05D004340 ORTHO05D006363 2.2e-243 846.3 863 54.5
vmacro11375 Vaccinium macrocarpon HOM05D004340 ORTHO05D006363 1.4e-242 843.6 1118 46.2
A04p12890 Brassica napus HOM05D004340 ORTHO05D006363 1.6e-241 840.1 921 52.6
ECA233G3760 Erigeron canadensis HOM05D004340 ORTHO05D006363 3.5e-241 839.0 779 61.2
ATR0564G449 Amborella trichopoda HOM05D004340 ORTHO05D006363 6.0e-241 838.2 886 54.1
Os04g0484800 Oryza sativa ssp. japonica HOM05D004340 ORTHO05D006363 4.7e-238 828.6 871 53.7
MBI05_g36413_MAGBIO Magnolia biondii HOM05D004340 ORTHO05D006363 1.1e-234 817.4 702 62.5
Duzib251G0421 Durio zibethinus HOM05D004340 ORTHO05D006363 1.6e-217 760.4 621 65.4
HPP92_021921 Vanilla planifolia HOM05D004340 ORTHO05D006363 2.1e-198 696.8 876 47.3
TPR.G26175 Trifolium pratense HOM05D004340 ORTHO05D006363 4.5e-196 689.1 480 77.1
unitig_747.g21183 Utricularia gibba HOM05D004340 ORTHO05D006363 3.6e-185 652.9 877 45.7
Rhsim10G0051900 Rhododendron simsii HOM05D004340 ORTHO05D006363 1.8e-160 570.9 883 40.1
Pp3c11_22070 Physcomitrium patens HOM05D004340 ORTHO05D006363 1.1e-154 551.6 892 39.6
SEGI_17726 Sequoiadendron giganteum HOM05D004340 ORTHO05D006363 2.6e-151 540.4 653 48.4
Mapoly0122s0055 Marchantia polymorpha HOM05D004340 ORTHO05D006363 6.3e-150 535.8 963 37.6
Oeu005760.1 Olea europaea HOM05D004340 ORTHO05D006363 1.7e-142 511.1 891 39.5
AagrBONN_evm.TU.Sc2ySwM_344.3807 Anthoceros agrestis HOM05D004340 ORTHO05D006363 9.2e-141 505.4 791 41.6
SMO361G0530 Selaginella moellendorffii HOM05D004340 ORTHO05D006363 3.5e-140 503.4 743 42.0
Glyma.10G070000 Glycine max HOM05D004340 ORTHO05D006363 1.4e-128 464.9 268 86.6
CDE04G0644 Ceratophyllum demersum HOM05D004340 ORTHO05D006363 3.1e-128 463.8 441 59.2
Actinidia33215 Actinidia chinensis HOM05D004340 ORTHO05D006363 9.9e-127 458.8 828 38.8
vmacro05171 Vaccinium macrocarpon HOM05D004340 ORTHO05D006363 9.9e-127 458.8 507 51.9
HPP92_022007 Vanilla planifolia HOM05D004340 ORTHO05D006363 2.1e-108 397.9 433 52.2
HPP92_022008 Vanilla planifolia HOM05D004340 ORTHO05D006363 2.5e-90 337.8 410 47.6
TPR.G26189 Trifolium pratense HOM05D004340 ORTHO05D006363 4.2e-85 320.5 183 89.6
PRCOL_00002008 Prasinoderma coloniale HOM05D004340 ORTHO05D006363 9.4e-77 292.7 648 32.1
Oeu050624.1 Olea europaea HOM05D004340 ORTHO05D006363 1.1e-74 285.8 186 75.3
vmacro05169 Vaccinium macrocarpon HOM05D004340 ORTHO05D006363 3.1e-72 277.7 307 51.1
MCO02G279 Micromonas commoda HOM05D004340 ORTHO05D006363 3.8e-70 270.8 621 30.3
Prupe.1G191200 Prunus persica HOM05D004340 ORTHO05D006363 3.5e-55 221.1 283 47.0
Cre10.g460532 Chlamydomonas reinhardtii HOM05D004340 ORTHO05D006363 8.0e-52 209.9 314 39.8
Ca_30738_v3 Cicer arietinum L. HOM05D004340 ORTHO05D006363 9.4e-45 186.4 180 60.0
SHI21659 Sapria himalayana HOM05D004340 ORTHO05D006363 2.8e-41 174.9 139 63.3
Eucgr.L00670 Eucalyptus grandis HOM05D004340 ORTHO05D006363 3.5e-39 167.9 180 56.1
CBR_g543 Chara braunii HOM05D004340 ORTHO05D006363 3.8e-38 164.5 364 32.7
Medtr7g022050 Medicago truncatula HOM05D001042 ORTHO05D007836 7.0e-32 143.7 215 44.2
Eucgr.L00684 Eucalyptus grandis HOM05D004340 ORTHO05D006363 3.5e-31 141.4 194 46.4
CDE04G2617 Ceratophyllum demersum HOM05D003388 ORTHO05D003616 8.6e-30 136.7 128 54.7
Cpa.g.sc1.51 Carica papaya HOM05D004340 ORTHO05D014919 3.3e-29 134.8 105 60.0
CBR_g545 Chara braunii HOM05D004340 ORTHO05D006363 1.4e-24 119.4 140 43.6
C02p00140 Brassica napus HOM05D004340 ORTHO05D006363 7.0e-24 117.1 110 53.6
vmacro05170 Vaccinium macrocarpon HOM05D004340 ORTHO05D006363 7.0e-24 117.1 82 70.7
Lalb_Chr05g0220261 Lupinus albus HOM05D004340 ORTHO05D014919 2.0e-23 115.5 83 63.9
MBI05_g36411_MAGBIO Magnolia biondii HOM05D004340 ORTHO05D014919 8.6e-22 110.2 198 36.4
Medtr0073s0020 Medicago truncatula HOM05D001042 ORTHO05D007836 1.1e-21 109.8 60 81.7
Nn1g04520 Nelumbo nucifera HOM05D004340 ORTHO05D006363 2.5e-21 108.6 72 75.0
RcHm_v2.0_Chr1g0372981 Rosa chinensis HOM05D004340 ORTHO05D013606 1.6e-20 105.9 75 61.3
EL10Ac2g03889 Beta vulgaris HOM05D004340 ORTHO05D014919 2.3e-14 85.5 93 48.4
Cfa022061 Carpinus fangiana HOM05D004340 ORTHO05D125423 5.1e-14 84.3 260 25.8
SHI21663 Sapria himalayana HOM05D004340 ORTHO05D014919 2.1e-12 79.0 78 48.7
Nn1g04518 Nelumbo nucifera HOM05D004340 ORTHO05D014919 2.8e-12 78.6 68 54.4
BolC8t48379H Brassica oleracea HOM05D004340 ORTHO05D014919 8.1e-12 77.0 114 43.0
PSO423G0166 Papaver somniferum HOM05D004340 ORTHO05D006363 1.4e-11 76.3 115 44.3
Nn1g04519 Nelumbo nucifera HOM05D004340 ORTHO05D006363 4.0e-11 74.7 109 44.0
BcaC07g37997 Brassica carinata HOM05D004340 ORTHO05D014919 5.2e-11 74.3 96 43.8
C08p42990 Brassica napus HOM05D004340 ORTHO05D014919 5.8e-10 70.9 116 39.7
SHI21660 Sapria himalayana HOM05D004340 ORTHO05D006363 1.7e-09 69.3 100 44.0
RcHm_v2.0_Chr1g0327871 Rosa chinensis HOM05D004340 ORTHO05D006363 3.2e-08 65.1 38 78.9
SEGI_26412 Sequoiadendron giganteum HOM05D004340 ORTHO05D014919 2.1e-07 62.4 93 35.5
BolC8t51851H Brassica oleracea HOM05D004340 ORTHO05D014919 3.5e-07 61.6 114 36.8
Potri.008G089100 Populus trichocarpa HOM05D004340 ORTHO05D005225 7.8e-07 60.5 63 47.6


User provided reference genes

Program Settings