Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G597 Trifolium pratense HOM05D004248 ORTHO05D004978 2.9e-20 100.9 50 100.0
Psat3g029120 Pisum sativum HOM05D004248 ORTHO05D004978 9.4e-19 95.9 50 94.0
Medtr7g106190 Medicago truncatula HOM05D004248 ORTHO05D004978 2.3e-17 91.3 50 88.0
Ca_09055_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 3.0e-17 90.9 50 92.0
Ca_26380_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 3.0e-17 90.9 50 92.0
Lalb_Chr20g0111391 Lupinus albus HOM05D004248 ORTHO05D004978 3.9e-17 90.5 50 88.0
Lj1g0019866 Lotus japonicus HOM05D004248 ORTHO05D004978 8.8e-17 89.4 50 88.0
arahy.Tifrunner.gnm1.ann1.2W33L2 Arachis hypogaea HOM05D004248 ORTHO05D004978 2.8e-15 84.3 50 82.0
arahy.Tifrunner.gnm1.ann1.ZDQ0NF Arachis hypogaea HOM05D004248 ORTHO05D004978 2.8e-15 84.3 50 82.0
Phvul.008G104000 Phaseolus vulgaris HOM05D004248 ORTHO05D004978 3.7e-15 84.0 51 82.4
Glyma.07G150100 Glycine max HOM05D004248 ORTHO05D004978 4.8e-15 83.6 51 82.4
Glyma.16G096800 Glycine max HOM05D004248 ORTHO05D004978 4.8e-15 83.6 51 82.4
Glyma.16G099100 Glycine max HOM05D004248 ORTHO05D004978 1.4e-14 82.0 51 80.4
VMungo0647G1936 Vigna mungo HOM05D004248 ORTHO05D004978 1.4e-14 82.0 51 78.4
RcHm_v2.0_Chr1g0331061 Rosa chinensis HOM05D004248 ORTHO05D004978 1.5e-13 78.6 50 70.0
RcHm_v2.0_Chr1g0331091 Rosa chinensis HOM05D004248 ORTHO05D004978 1.5e-13 78.6 50 70.0
Psat3g179800 Pisum sativum HOM05D004248 ORTHO05D004978 2.6e-13 77.8 41 90.2
Potri.011G095700 Populus trichocarpa HOM05D004248 ORTHO05D004978 5.9e-13 76.6 50 72.0
Psat3g179840 Pisum sativum HOM05D004248 ORTHO05D004978 7.7e-13 76.3 40 90.0
Potri.001G208900 Populus trichocarpa HOM05D004248 ORTHO05D004978 7.7e-13 76.3 50 70.0
RcHm_v2.0_Chr3g0475871 Rosa chinensis HOM05D004248 ORTHO05D004978 7.7e-13 76.3 50 68.0
Cfa016679 Carpinus fangiana HOM05D004248 ORTHO05D004978 1.0e-12 75.9 50 72.0
FvH4_6g20280 Fragaria vesca HOM05D004248 ORTHO05D004978 1.0e-12 75.9 50 68.0
FAN05G1094 Fragaria x ananassa HOM05D004248 ORTHO05D004978 1.0e-12 75.9 50 68.0
FAN05G4951 Fragaria x ananassa HOM05D004248 ORTHO05D004978 1.0e-12 75.9 50 68.0
FAN14G1070 Fragaria x ananassa HOM05D004248 ORTHO05D004978 1.0e-12 75.9 50 68.0
Prupe.7G095000 Prunus persica HOM05D004248 ORTHO05D004978 1.0e-12 75.9 50 68.0
Sabra06G0156800 Salix brachista HOM05D004248 ORTHO05D004978 1.7e-12 75.1 50 68.0
Atru.chr9.697 Acer truncatum HOM05D004248 ORTHO05D004978 2.2e-12 74.7 50 70.0
Haze_20188 Corylus avellana HOM05D004248 ORTHO05D004978 2.2e-12 74.7 50 70.0
MD10G1053900 Malus domestica HOM05D004248 ORTHO05D004978 2.2e-12 74.7 50 68.0
MD12G1040000 Malus domestica HOM05D004248 ORTHO05D004978 2.2e-12 74.7 50 68.0
Cfa020026 Carpinus fangiana HOM05D004248 ORTHO05D004978 2.9e-12 74.3 50 70.0
MSTRG.5896 Avicennia marina HOM05D004248 ORTHO05D004978 3.8e-12 73.9 50 68.0
Ciclev10011038m.g Citrus clementina HOM05D004248 ORTHO05D004978 3.8e-12 73.9 50 68.0
Dinv31757 Davidia involucrata HOM05D004248 ORTHO05D004978 3.8e-12 73.9 50 68.0
FAN09G3200 Fragaria x ananassa HOM05D004248 ORTHO05D004978 3.8e-12 73.9 50 66.0
GSVIVG01033954001 Vitis vinifera HOM05D004248 ORTHO05D004978 3.8e-12 73.9 50 70.0
Dinv05301 Davidia involucrata HOM05D004248 ORTHO05D004978 5.0e-12 73.6 50 68.0
Gohir.A09G134400 Gossypium hirsutum HOM05D004248 ORTHO05D004978 1.1e-11 72.4 50 66.0
QL07p036804 Quercus lobata HOM05D004248 ORTHO05D004978 1.1e-11 72.4 50 70.0
Haze_19699 Corylus avellana HOM05D004248 ORTHO05D004978 1.4e-11 72.0 50 70.0
ECA247G2914 Erigeron canadensis HOM05D004248 ORTHO05D004978 1.4e-11 72.0 50 66.0
Gohir.D09G130900 Gossypium hirsutum HOM05D004248 ORTHO05D004978 1.4e-11 72.0 50 66.0
Gorai.006G149600 Gossypium raimondii HOM05D004248 ORTHO05D004978 1.4e-11 72.0 50 66.0
CSS0019025 Camellia sinensis var. sinensis HOM05D004248 ORTHO05D004978 1.9e-11 71.6 50 66.0
CiPaw.10G017100 Carya illinoinensis HOM05D004248 ORTHO05D004978 1.9e-11 71.6 50 70.0
Sabra01G0161200 Salix brachista HOM05D004248 ORTHO05D004978 1.9e-11 71.6 50 66.0
SGA_v2.0_scaffold13G06632 Striga asiatica HOM05D004248 ORTHO05D004978 1.9e-11 71.6 50 68.0
Duzib093G0037 Durio zibethinus HOM05D004248 ORTHO05D004978 3.2e-11 70.9 50 68.0
Hma1.2p1_0079F.1_g041850 Hydrangea macrophylla HOM05D004248 ORTHO05D004978 4.2e-11 70.5 50 68.0
Oeu036626.1 Olea europaea HOM05D004248 ORTHO05D004978 4.2e-11 70.5 50 66.0
Oeu052620.1 Olea europaea HOM05D004248 ORTHO05D004978 4.2e-11 70.5 50 66.0
Lsat_1_v5_gn_3_1160 Lactuca sativa HOM05D004248 ORTHO05D004978 7.2e-11 69.7 50 66.0
Actinidia06045 Actinidia chinensis HOM05D004248 ORTHO05D004978 1.2e-10 68.9 50 66.0
Actinidia37744 Actinidia chinensis HOM05D004248 ORTHO05D004978 1.2e-10 68.9 50 66.0
HanXRQChr17g0549301 Helianthus annuus HOM05D004248 ORTHO05D004978 1.2e-10 68.9 50 62.0
Rhsim03G0064800 Rhododendron simsii HOM05D004248 ORTHO05D004978 1.2e-10 68.9 50 64.0
Migut.J00705 Erythranthe guttata HOM05D004248 ORTHO05D004978 2.7e-10 67.8 50 64.0
Thecc.05G104000 Theobroma cacao HOM05D004248 ORTHO05D004978 2.7e-10 67.8 50 62.0
TWI74G1036 Tripterygium wilfordii HOM05D004248 ORTHO05D004978 2.7e-10 67.8 41 73.2
Cc06_g06540 Coffea canephora HOM05D004248 ORTHO05D004978 3.6e-10 67.4 50 62.0
Atru.chr8.1370 Acer truncatum HOM05D004248 ORTHO05D004978 4.7e-10 67.0 41 73.2
COL.COLO4_29580 Corchorus olitorius HOM05D004248 ORTHO05D004978 6.1e-10 66.6 50 64.0
FAN02G0498 Fragaria x ananassa HOM05D004248 ORTHO05D004978 6.1e-10 66.6 45 64.4
vmacro07476 Vaccinium macrocarpon HOM05D004248 ORTHO05D004978 6.1e-10 66.6 50 62.0
Eucgr.E01507 Eucalyptus grandis HOM05D004248 ORTHO05D004978 1.0e-09 65.9 49 67.3
Sc22g0002860 Simmondsia chinensis HOM05D004248 ORTHO05D004978 1.0e-09 65.9 50 62.0
AL6G38940 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 1.4e-09 65.5 50 58.0
AT5G06350 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 2.3e-09 64.7 50 60.0
Manes.09G044700 Manihot esculenta HOM05D004248 ORTHO05D004978 3.0e-09 64.3 50 60.0
CAN.G574.19 Capsicum annuum HOM05D004248 ORTHO05D004978 3.9e-09 63.9 50 56.0
SHI44568 Sapria himalayana HOM05D004248 ORTHO05D004978 3.9e-09 63.9 50 58.0
Cpa.g.sc104.34 Carica papaya HOM05D004248 ORTHO05D004978 5.1e-09 63.5 50 62.0
DCAR_020706 Daucus carota HOM05D004248 ORTHO05D004978 5.1e-09 63.5 50 66.0
Sopen01g003120 Solanum pennellii HOM05D004248 ORTHO05D004978 5.1e-09 63.5 50 56.0
HanXRQChr06g0164371 Helianthus annuus HOM05D004248 ORTHO05D004978 6.7e-09 63.2 49 59.2
Manes.09G045100 Manihot esculenta HOM05D004248 ORTHO05D004978 6.7e-09 63.2 50 60.0
Aa31sc52G180 Aethionema arabicum HOM05D004248 ORTHO05D004978 8.8e-09 62.8 50 58.0
EL10Ac5g12964 Beta vulgaris HOM05D004248 ORTHO05D004978 8.8e-09 62.8 50 60.0
Carub.0006s0524 Capsella rubella HOM05D004248 ORTHO05D004978 8.8e-09 62.8 50 54.0
Nn4g22932 Nelumbo nucifera HOM05D004248 ORTHO05D004978 8.8e-09 62.8 45 66.7
Nitab4.5_0000020g0020 Nicotiana tabacum HOM05D004248 ORTHO05D004978 8.8e-09 62.8 50 56.0
Solyc01g007140.3 Solanum lycopersicum HOM05D004248 ORTHO05D004978 8.8e-09 62.8 50 56.0
PSO017G5751 Papaver somniferum HOM05D004248 ORTHO05D004978 1.1e-08 62.4 43 69.8
PSO478G2311 Papaver somniferum HOM05D004248 ORTHO05D004978 1.1e-08 62.4 43 69.8
Sp6g36500 Schrenkiella parvula HOM05D004248 ORTHO05D004978 1.5e-08 62.0 50 56.0
ClCG10G016230 Citrullus lanatus HOM05D004248 ORTHO05D004978 2.6e-08 61.2 50 54.0
MELO3C009754.2 Cucumis melo HOM05D004248 ORTHO05D004978 2.6e-08 61.2 50 54.0
CsaV3_3G040150 Cucumis sativus L. HOM05D004248 ORTHO05D004978 2.6e-08 61.2 50 54.0
BcaB02g11156 Brassica carinata HOM05D004248 ORTHO05D004978 3.3e-08 60.8 50 52.0
BcaB02g11160 Brassica carinata HOM05D004248 ORTHO05D004978 3.3e-08 60.8 50 52.0
AUR62036385 Chenopodium quinoa HOM05D004248 ORTHO05D004978 4.4e-08 60.5 43 62.8
Nitab4.5_0002858g0080 Nicotiana tabacum HOM05D004248 ORTHO05D004978 4.4e-08 60.5 50 54.0
AUR62030747 Chenopodium quinoa HOM05D004248 ORTHO05D004978 7.4e-08 59.7 43 60.5
Peaxi162Scf00586g00027 Petunia axillaris HOM05D004248 ORTHO05D004978 9.7e-08 59.3 50 54.0
unitig_8.g3983 Utricularia gibba HOM05D004248 ORTHO05D004978 9.7e-08 59.3 44 61.4
Aqoxy3G00875 Aquilegia oxysepala HOM05D004248 ORTHO05D004978 1.3e-07 58.9 45 62.2
MBI13_g30330_MAGBIO Magnolia biondii HOM05D004248 ORTHO05D003073 2.2e-07 58.2 45 62.2
Sed0013531 Sechium edule HOM05D004248 ORTHO05D004978 3.7e-07 57.4 50 54.0
THA.LOC104809952 Tarenaya hassleriana HOM05D004248 ORTHO05D004978 3.7e-07 57.4 50 48.0
Thhalv10012647m.g Eutrema salsugineum HOM05D004248 ORTHO05D004978 6.3e-07 56.6 45 55.6
AT5G27010 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 1.4e-06 55.5 49 53.1
CANSAT01G1742 Cannabis sativa HOM05D004248 ORTHO05D004978 1.4e-06 55.5 46 54.3
AL6G16420 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 5.3e-06 53.5 50 52.0
CARHR207090 Cardamine hirsuta HOM05D004248 ORTHO05D004978 7.0e-06 53.1 50 50.0


User provided reference genes

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