Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G5956 Trifolium pratense HOM05D002380 ORTHO05D006960 0.0e+00 2195.6 1093 100.0
Medtr2g005110 Medicago truncatula HOM05D002380 ORTHO05D006960 0.0e+00 2100.1 1091 95.5
Ca_00015_v3 Cicer arietinum L. HOM05D002380 ORTHO05D006960 0.0e+00 2093.2 1093 94.9
Psat1g223680 Pisum sativum HOM05D002380 ORTHO05D006960 0.0e+00 2049.2 1093 92.5
Phvul.006G221800 Phaseolus vulgaris HOM05D002380 ORTHO05D006960 0.0e+00 1973.0 1091 89.0
Glyma.16G000200 Glycine max HOM05D002380 ORTHO05D006960 0.0e+00 1971.8 1091 88.8
Glyma.12G163700 Glycine max HOM05D002380 ORTHO05D006960 0.0e+00 1963.3 1091 88.7
Lj2g0027017 Lotus japonicus HOM05D002380 ORTHO05D006960 0.0e+00 1950.3 1094 88.7
VMungo0540G1526 Vigna mungo HOM05D002380 ORTHO05D006960 0.0e+00 1947.9 1091 87.7
Lalb_Chr18g0061151 Lupinus albus HOM05D002380 ORTHO05D006960 0.0e+00 1926.8 1089 87.1
arahy.Tifrunner.gnm1.ann1.551JVB Arachis hypogaea HOM05D002380 ORTHO05D006960 0.0e+00 1851.3 1084 83.9
arahy.Tifrunner.gnm1.ann1.QHFI3V Arachis hypogaea HOM05D002380 ORTHO05D006960 0.0e+00 1851.3 1084 83.9
FvH4_5g27550 Fragaria vesca HOM05D002380 ORTHO05D006960 0.0e+00 1753.0 1082 78.7
Prupe.1G586400 Prunus persica HOM05D002380 ORTHO05D006960 0.0e+00 1741.5 1083 78.5
RcHm_v2.0_Chr7g0218921 Rosa chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1741.5 1082 78.6
Dinv29639 Davidia involucrata HOM05D002380 ORTHO05D006960 0.0e+00 1738.4 1081 79.2
MD15G1443800 Malus domestica HOM05D002380 ORTHO05D006960 0.0e+00 1726.5 1083 77.8
MD08G1249200 Malus domestica HOM05D002380 ORTHO05D006960 0.0e+00 1721.1 1082 77.5
QL02p103637 Quercus lobata HOM05D002380 ORTHO05D006960 0.0e+00 1717.6 1083 77.7
TWI23G0559 Tripterygium wilfordii HOM05D002380 ORTHO05D006960 0.0e+00 1717.6 1092 76.7
ClCG10G007520 Citrullus lanatus HOM05D002380 ORTHO05D006960 0.0e+00 1717.2 1085 77.6
CiPaw.05G001100 Carya illinoinensis HOM05D002380 ORTHO05D006960 0.0e+00 1710.3 1087 77.8
Hma1.2p1_3305F.1_g335100 Hydrangea macrophylla HOM05D002380 ORTHO05D006960 0.0e+00 1709.1 1083 77.1
GSVIVG01023133001 Vitis vinifera HOM05D002380 ORTHO05D006960 0.0e+00 1708.3 1084 77.8
Manes.10G105800 Manihot esculenta HOM05D002380 ORTHO05D006960 0.0e+00 1706.0 1084 76.5
TAR381G0848 Trochodendron aralioides HOM05D002380 ORTHO05D006960 0.0e+00 1704.5 1087 76.0
CANSAT01G1628 Cannabis sativa HOM05D002380 ORTHO05D006960 0.0e+00 1702.6 1081 76.7
Cfa004427 Carpinus fangiana HOM05D002380 ORTHO05D006960 0.0e+00 1697.9 1085 76.9
Cpa.g.sc173.3 Carica papaya HOM05D002380 ORTHO05D006960 0.0e+00 1693.3 1084 76.8
FAN18G1053 Fragaria x ananassa HOM05D002380 ORTHO05D006960 0.0e+00 1689.9 1164 72.3
Manes.07G031400 Manihot esculenta HOM05D002380 ORTHO05D006960 0.0e+00 1683.3 1085 76.2
FAN13G2214 Fragaria x ananassa HOM05D002380 ORTHO05D006960 0.0e+00 1681.8 1164 72.2
CSS0006349 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 0.0e+00 1681.0 1083 75.8
Ciclev10000109m.g Citrus clementina HOM05D002380 ORTHO05D006960 0.0e+00 1676.0 1071 76.6
CsaV3_3G006730 Cucumis sativus L. HOM05D002380 ORTHO05D006960 0.0e+00 1676.0 1085 75.7
MELO3C016448.2 Cucumis melo HOM05D002380 ORTHO05D006960 0.0e+00 1675.2 1085 75.9
Gohir.D05G109900 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1672.1 1083 76.5
Rhsim11G0117400 Rhododendron simsii HOM05D002380 ORTHO05D006960 0.0e+00 1672.1 1085 75.2
Sed0016889 Sechium edule HOM05D002380 ORTHO05D006960 0.0e+00 1671.4 1085 75.9
Gorai.009G114000 Gossypium raimondii HOM05D002380 ORTHO05D006960 0.0e+00 1669.8 1083 76.5
Sed0014048 Sechium edule HOM05D002380 ORTHO05D006960 0.0e+00 1669.4 1085 75.1
CSS0029934 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 0.0e+00 1666.7 1084 75.6
CSS0043519 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 0.0e+00 1666.7 1084 75.6
Atru.chr6.195 Acer truncatum HOM05D002380 ORTHO05D006960 0.0e+00 1664.8 1100 75.6
Thecc.06G020600 Theobroma cacao HOM05D002380 ORTHO05D006960 0.0e+00 1664.8 1084 76.4
Actinidia01643 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1658.7 1083 75.3
Gorai.010G143100 Gossypium raimondii HOM05D002380 ORTHO05D006960 0.0e+00 1653.3 1084 75.1
MBI03_g21084_MAGBIO Magnolia biondii HOM05D002380 ORTHO05D006960 0.0e+00 1650.2 1089 73.6
vmacro23029 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 0.0e+00 1649.0 1111 72.6
Potri.004G229800 Populus trichocarpa HOM05D002380 ORTHO05D006960 0.0e+00 1645.2 1091 74.0
Gohir.D06G122900 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1644.8 1084 74.7
Eucgr.G00060 Eucalyptus grandis HOM05D002380 ORTHO05D006960 0.0e+00 1641.3 1092 73.4
Gohir.A06G115700 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1640.2 1084 74.7
Cc02_g23660 Coffea canephora HOM05D002380 ORTHO05D006960 0.0e+00 1631.3 1082 73.0
MSTRG.27885 Avicennia marina HOM05D002380 ORTHO05D006960 0.0e+00 1612.0 1081 72.9
Aqoxy6G00017 Aquilegia oxysepala HOM05D002380 ORTHO05D006960 0.0e+00 1606.3 1086 72.0
Sabra01G0175000 Salix brachista HOM05D002380 ORTHO05D006960 0.0e+00 1604.0 1091 73.0
CAN.G855.61 Capsicum annuum HOM05D002380 ORTHO05D006960 0.0e+00 1597.0 1083 72.2
Peaxi162Scf00011g02119 Petunia axillaris HOM05D002380 ORTHO05D006960 0.0e+00 1594.3 1084 71.9
Solyc01g102940.3 Solanum lycopersicum HOM05D002380 ORTHO05D006960 0.0e+00 1592.0 1083 71.7
PGSC0003DMG400020720 Solanum tuberosum HOM05D002380 ORTHO05D006960 0.0e+00 1591.2 1083 72.0
DCAR_001729 Daucus carota HOM05D002380 ORTHO05D006960 0.0e+00 1590.9 1089 72.8
Nitab4.5_0005164g0050 Nicotiana tabacum HOM05D002380 ORTHO05D006960 0.0e+00 1590.1 1096 71.4
Lsat_1_v5_gn_9_83520 Lactuca sativa HOM05D002380 ORTHO05D006960 0.0e+00 1589.7 1083 71.8
Sopen01g045350 Solanum pennellii HOM05D002380 ORTHO05D006960 0.0e+00 1589.3 1083 71.7
Oeu016644.1 Olea europaea HOM05D002380 ORTHO05D006960 0.0e+00 1587.0 1110 70.6
AL8G23780 Arabidopsis lyrata HOM05D002380 ORTHO05D006960 0.0e+00 1586.2 1083 71.5
THA.LOC104809041 Tarenaya hassleriana HOM05D002380 ORTHO05D006960 0.0e+00 1584.7 1085 71.0
CARHR258960 Cardamine hirsuta HOM05D002380 ORTHO05D006960 0.0e+00 1584.3 1081 71.8
Sp6g11200 Schrenkiella parvula HOM05D002380 ORTHO05D006960 0.0e+00 1583.5 1081 71.8
AT5G49810 Arabidopsis thaliana HOM05D002380 ORTHO05D006960 0.0e+00 1581.6 1083 71.2
Migut.N00867 Erythranthe guttata HOM05D002380 ORTHO05D006960 0.0e+00 1580.1 1083 70.6
PSO210G3401 Papaver somniferum HOM05D002380 ORTHO05D006960 0.0e+00 1579.7 1086 72.0
Nn5g27142 Nelumbo nucifera HOM05D002380 ORTHO05D006960 0.0e+00 1579.3 1015 76.3
ECA236G1140 Erigeron canadensis HOM05D002380 ORTHO05D006960 0.0e+00 1578.9 1085 72.0
Thhalv10028379m.g Eutrema salsugineum HOM05D002380 ORTHO05D006960 0.0e+00 1578.5 1083 71.7
PGR042G1044 Punica granatum HOM05D002380 ORTHO05D006960 0.0e+00 1578.1 1092 71.2
Carub.0008s0969 Capsella rubella HOM05D002380 ORTHO05D006960 0.0e+00 1577.8 1083 71.5
SGA_v2.0_scaffold100G29554 Striga asiatica HOM05D002380 ORTHO05D006960 0.0e+00 1575.8 1097 69.9
PSO447G0289 Papaver somniferum HOM05D002380 ORTHO05D006960 0.0e+00 1575.5 1086 71.8
THA.LOC104800334 Tarenaya hassleriana HOM05D002380 ORTHO05D006960 0.0e+00 1575.1 1068 71.7
A02p12930 Brassica napus HOM05D002380 ORTHO05D006960 0.0e+00 1574.7 1083 71.4
BraA02t06347Z Brassica rapa HOM05D002380 ORTHO05D006960 0.0e+00 1574.7 1083 71.4
Duzib192G0099 Durio zibethinus HOM05D002380 ORTHO05D006960 0.0e+00 1573.9 1084 73.3
BcaC03g14666 Brassica carinata HOM05D002380 ORTHO05D006960 0.0e+00 1572.8 1083 71.2
HanXRQChr04g0109261 Helianthus annuus HOM05D002380 ORTHO05D006960 0.0e+00 1572.8 1084 71.6
BolC2t08245H Brassica oleracea HOM05D002380 ORTHO05D006960 0.0e+00 1572.4 1083 71.2
BcaB05g24066 Brassica carinata HOM05D002380 ORTHO05D006960 0.0e+00 1572.0 1083 70.9
C02p21040 Brassica napus HOM05D002380 ORTHO05D006960 0.0e+00 1571.2 1083 71.1
Hund15344 Selenicereus undatus HOM05D002380 ORTHO05D006960 0.0e+00 1570.4 1086 71.0
Ah.02g128480 Amaranthus hybridus HOM05D002380 ORTHO05D006960 0.0e+00 1561.6 1084 70.0
FAN08G1900 Fragaria x ananassa HOM05D002380 ORTHO05D006960 0.0e+00 1560.8 995 77.4
Aa31sc192G20 Aethionema arabicum HOM05D002380 ORTHO05D006960 0.0e+00 1554.7 1111 68.5
HanXRQChr15g0469711 Helianthus annuus HOM05D002380 ORTHO05D006960 0.0e+00 1550.8 1090 70.6
PSO528G0147 Papaver somniferum HOM05D002380 ORTHO05D006960 0.0e+00 1547.3 1086 70.5
AUR62042248 Chenopodium quinoa HOM05D002380 ORTHO05D006960 0.0e+00 1545.4 1084 69.8
Oeu043598.1 Olea europaea HOM05D002380 ORTHO05D006960 0.0e+00 1545.4 1086 70.6
Lsat_1_v5_gn_9_125160 Lactuca sativa HOM05D002380 ORTHO05D006960 0.0e+00 1542.7 1104 68.8
SalBow4G1427 Salvia bowleyana HOM05D002380 ORTHO05D006960 0.0e+00 1541.9 1161 66.1
vmacro19822 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 0.0e+00 1539.6 1002 75.3
Lj9C258G8 Lonicera japonica HOM05D002380 ORTHO05D006960 0.0e+00 1536.2 1103 69.9
EL10Ac6g13966 Beta vulgaris HOM05D002380 ORTHO05D006960 0.0e+00 1535.4 1082 68.9
Migut.B00709 Erythranthe guttata HOM05D002380 ORTHO05D006960 0.0e+00 1529.6 1082 68.8
AUR62032480 Chenopodium quinoa HOM05D002380 ORTHO05D006960 0.0e+00 1516.5 1058 70.3
ATR1089G010 Amborella trichopoda HOM05D002380 ORTHO05D006960 0.0e+00 1483.8 1114 66.2
Sc03g0005740 Simmondsia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1465.3 980 72.7
Haze_09967 Corylus avellana HOM05D002380 ORTHO05D006960 0.0e+00 1452.2 1084 68.6
Os05g0105000 Oryza sativa ssp. japonica HOM05D002380 ORTHO05D006960 0.0e+00 1446.4 1085 65.8
Nitab4.5_0003247g0030 Nicotiana tabacum HOM05D002380 ORTHO05D006960 0.0e+00 1438.7 1083 66.5
Zm00001eb356170 Zea mays HOM05D002380 ORTHO05D006960 0.0e+00 1421.0 1107 63.6
Actinidia00145 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1357.0 1083 65.3
Gohir.A05G109500 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1286.6 790 80.4
Pp3c11_2824 Physcomitrium patens HOM05D002380 ORTHO05D006960 0.0e+00 1201.4 1100 55.1
AagrBONN_evm.TU.Sc2ySwM_117.3323 Anthoceros agrestis HOM05D002380 ORTHO05D006960 0.0e+00 1197.2 1098 54.9
Pp3c11_2820 Physcomitrium patens HOM05D002380 ORTHO05D006960 0.0e+00 1181.0 1142 53.1
Dinv29685 Davidia involucrata HOM05D002380 ORTHO05D006960 0.0e+00 1173.3 689 82.6
Actinidia11733 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1151.7 717 78.8
Actinidia25324 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1146.0 671 82.1
SMO301G0051 Selaginella moellendorffii HOM05D002380 ORTHO05D006960 0.0e+00 1137.1 1088 53.0
Mapoly0008s0067 Marchantia polymorpha HOM05D002380 ORTHO05D006960 0.0e+00 1125.2 1090 52.5
Lj5A286G23 Lonicera japonica HOM05D002380 ORTHO05D006960 0.0e+00 1075.8 757 71.1
SEGI_21259 Sequoiadendron giganteum HOM05D002380 ORTHO05D006960 5.7e-294 1014.6 845 59.8
CDE04G0097 Ceratophyllum demersum HOM05D002380 ORTHO05D006960 2.7e-280 969.1 817 60.7
COL.COLO4_31108 Corchorus olitorius HOM05D002380 ORTHO05D006960 5.3e-276 954.9 613 77.7
Pp3c2_34390 Physcomitrium patens HOM05D002380 ORTHO05D006960 4.1e-252 875.5 968 48.8
vmacro23188 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 5.0e-250 868.6 626 69.5
SGA_v2.0_scaffold8G04465 Striga asiatica HOM05D002380 ORTHO05D006960 2.3e-239 833.2 499 79.6
CDE07G1039 Ceratophyllum demersum HOM05D002380 ORTHO05D006960 1.4e-228 797.3 634 63.1
Rhsim11G0165900 Rhododendron simsii HOM05D002380 ORTHO05D006960 1.8e-215 753.8 979 45.8
SGA_v2.0_scaffold8G04464 Striga asiatica HOM05D002380 ORTHO05D006960 5.3e-175 619.4 616 53.6
HPP92_002029 Vanilla planifolia HOM05D002380 ORTHO05D006960 2.2e-165 587.4 429 69.5
Lj5A286G24 Lonicera japonica HOM05D002380 ORTHO05D006960 8.0e-155 552.4 303 85.5
HPP92_001968 Vanilla planifolia HOM05D002380 ORTHO05D006960 1.4e-130 471.9 310 73.2
Dinv29684 Davidia involucrata HOM05D002380 ORTHO05D006960 3.4e-129 467.2 388 63.4
Ciclev10003598m.g Citrus clementina HOM05D002380 ORTHO05D006960 1.4e-79 302.4 297 54.5
Gohir.A05G109600 Gossypium hirsutum HOM05D002380 ORTHO05D023317 5.1e-77 293.9 237 62.4
Glyma.12G000300 Glycine max HOM05D002380 ORTHO05D020389 1.7e-67 262.3 136 88.2
HPP92_002030 Vanilla planifolia HOM05D002380 ORTHO05D006960 5.5e-63 247.3 205 61.5
CDE07G1792 Ceratophyllum demersum HOM05D002380 ORTHO05D020389 9.7e-52 209.9 138 68.1
arahy.Tifrunner.gnm1.ann1.GM2IKF Arachis hypogaea HOM05D000651 ORTHO05D016628 1.7e-35 156.0 162 54.3
Hma1.2p1_0071F.1_g037870 Hydrangea macrophylla HOM05D002380 ORTHO05D023317 7.7e-33 147.1 141 58.2
Eucgr.G00059 Eucalyptus grandis HOM05D002380 ORTHO05D020389 3.6e-30 138.3 72 88.9
Ciclev10003848m.g Citrus clementina HOM05D002380 ORTHO05D020389 8.0e-30 137.1 156 46.8
COL.COLO4_31109 Corchorus olitorius HOM05D002380 ORTHO05D023317 4.0e-29 134.8 105 61.0
Psat7g071520 Pisum sativum HOM05D002380 ORTHO05D023317 2.6e-28 132.1 145 51.7
DCAR_016399 Daucus carota HOM05D002380 ORTHO05D175910 4.1e-26 124.8 97 63.9
Actinidia11734 Actinidia chinensis HOM05D002380 ORTHO05D023317 8.0e-22 110.5 88 63.6
TPR.G25657 Trifolium pratense HOM05D002380 ORTHO05D411535 1.0e-16 93.6 47 97.9
SEGI_06600 Sequoiadendron giganteum HOM05D002380 ORTHO05D020389 4.7e-14 84.7 49 73.5
HPP92_001966 Vanilla planifolia HOM05D002380 ORTHO05D020389 8.9e-13 80.5 73 45.2
arahy.Tifrunner.gnm1.ann1.Z2ISY4 Arachis hypogaea HOM05D000651 ORTHO05D016628 9.2e-10 70.5 114 41.2
GSVIVG01037094001 Vitis vinifera HOM05D002380 ORTHO05D020389 2.5e-07 62.4 39 71.8


User provided reference genes

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