Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G5949 Trifolium pratense HOM05D006009 ORTHO05D007389 0.0e+00 1303.5 740 100.0
Ca_13530_v3 Cicer arietinum L. HOM05D006009 ORTHO05D007389 0.0e+00 1145.2 716 88.1
Psat4g001000 Pisum sativum HOM05D006009 ORTHO05D007389 0.0e+00 1096.3 719 86.5
Medtr4g134640 Medicago truncatula HOM05D006009 ORTHO05D007389 0.0e+00 1089.7 716 84.6
Lj4g0014586 Lotus japonicus HOM05D006009 ORTHO05D007389 2.3e-299 1031.9 722 79.4
arahy.Tifrunner.gnm1.ann1.AUD1A6 Arachis hypogaea HOM05D006009 ORTHO05D007389 5.7e-290 1000.7 721 77.3
Glyma.17G001700 Glycine max HOM05D006009 ORTHO05D007389 1.8e-288 995.7 716 78.4
arahy.Tifrunner.gnm1.ann1.WHZ4K1 Arachis hypogaea HOM05D006009 ORTHO05D007389 3.2e-288 995.0 721 77.1
Lalb_Chr12g0195841 Lupinus albus HOM05D006009 ORTHO05D007389 3.6e-284 981.5 718 75.8
Phvul.003G076200 Phaseolus vulgaris HOM05D006009 ORTHO05D007389 1.7e-278 962.6 688 77.6
Glyma.07G272700 Glycine max HOM05D006009 ORTHO05D007389 9.2e-272 940.3 687 77.4
QL02p103325 Quercus lobata HOM05D006009 ORTHO05D007389 3.0e-270 935.3 724 72.4
Cfa004445 Carpinus fangiana HOM05D006009 ORTHO05D007389 1.1e-267 926.8 721 71.8
Thecc.06G017900 Theobroma cacao HOM05D006009 ORTHO05D007389 2.9e-265 918.7 727 71.1
Duzib160G0440 Durio zibethinus HOM05D006009 ORTHO05D007389 1.2e-263 913.3 727 70.7
Atru.chr6.240 Acer truncatum HOM05D006009 ORTHO05D007389 2.7e-263 912.1 731 71.5
CiPaw.05G001600 Carya illinoinensis HOM05D006009 ORTHO05D007389 1.5e-261 906.4 722 70.5
Dinv29632 Davidia involucrata HOM05D006009 ORTHO05D007389 1.7e-257 892.9 720 70.7
Haze_09985 Corylus avellana HOM05D006009 ORTHO05D007389 2.9e-257 892.1 808 63.9
Manes.10G106700 Manihot esculenta HOM05D006009 ORTHO05D007389 1.1e-256 890.2 724 69.9
CSS0016468 Camellia sinensis var. sinensis HOM05D006009 ORTHO05D007389 2.1e-252 875.9 720 68.6
RcHm_v2.0_Chr7g0219751 Rosa chinensis HOM05D006009 ORTHO05D007389 4.8e-252 874.8 725 69.1
FvH4_5g27851 Fragaria vesca HOM05D006009 ORTHO05D007389 1.1e-251 873.6 724 68.2
Gohir.D06G150100 Gossypium hirsutum HOM05D006009 ORTHO05D007389 1.2e-250 870.2 728 70.1
Gorai.010G175200 Gossypium raimondii HOM05D006009 ORTHO05D007389 4.2e-248 861.7 729 69.8
Ciclev10000419m.g Citrus clementina HOM05D006009 ORTHO05D007389 3.5e-247 858.6 728 68.5
COL.COLO4_31132 Corchorus olitorius HOM05D006009 ORTHO05D007389 4.6e-247 858.2 697 70.0
CsaV3_5G037180 Cucumis sativus L. HOM05D006009 ORTHO05D007389 3.3e-245 852.0 730 66.6
MD08G1248100 Malus domestica HOM05D006009 ORTHO05D007389 3.3e-245 852.0 725 68.0
TWI59G1011 Tripterygium wilfordii HOM05D006009 ORTHO05D007389 7.4e-245 850.9 691 68.5
Actinidia00150 Actinidia chinensis HOM05D006009 ORTHO05D007389 2.2e-241 839.3 720 65.7
MELO3C022930.2 Cucumis melo HOM05D006009 ORTHO05D007389 3.8e-241 838.6 730 65.9
Sabra03G0000300 Salix brachista HOM05D006009 ORTHO05D007389 4.9e-241 838.2 728 66.5
Hma1.2p1_0052F.1_g030000 Hydrangea macrophylla HOM05D006009 ORTHO05D007389 1.6e-239 833.2 703 68.7
MD15G1442900 Malus domestica HOM05D006009 ORTHO05D007389 1.6e-239 833.2 720 66.9
Solyc01g103040.4 Solanum lycopersicum HOM05D006009 ORTHO05D007389 2.7e-239 832.4 723 66.8
ClCG11G000290 Citrullus lanatus HOM05D006009 ORTHO05D007389 7.9e-239 830.9 731 65.7
Potri.003G000900 Populus trichocarpa HOM05D006009 ORTHO05D007389 7.9e-239 830.9 728 65.8
Nitab4.5_0002261g0040 Nicotiana tabacum HOM05D006009 ORTHO05D007389 2.3e-238 829.3 727 67.0
PGR142G3497 Punica granatum HOM05D006009 ORTHO05D007389 1.5e-237 826.6 726 65.3
Eucgr.I02796 Eucalyptus grandis HOM05D006009 ORTHO05D007389 1.9e-237 826.2 720 65.3
Prupe.1G585300 Prunus persica HOM05D006009 ORTHO05D007389 3.3e-237 825.5 672 69.8
Rhsim11G0117900 Rhododendron simsii HOM05D006009 ORTHO05D007389 5.6e-237 824.7 749 63.8
TAR628G0644 Trochodendron aralioides HOM05D006009 ORTHO05D007389 5.3e-235 818.1 722 66.3
Nitab4.5_0005110g0010 Nicotiana tabacum HOM05D006009 ORTHO05D007389 1.3e-233 813.5 745 64.6
Sp6g11340 Schrenkiella parvula HOM05D006009 ORTHO05D007389 4.9e-233 811.6 723 63.5
Sopen01g045450 Solanum pennellii HOM05D006009 ORTHO05D007389 4.9e-233 811.6 723 65.8
CARHR258850 Cardamine hirsuta HOM05D006009 ORTHO05D007389 4.2e-232 808.5 725 63.4
BcaB08g35360 Brassica carinata HOM05D006009 ORTHO05D007389 9.3e-232 807.4 722 63.7
AL8G23820 Arabidopsis lyrata HOM05D006009 ORTHO05D007389 2.1e-231 806.2 727 63.1
Thhalv10012797m.g Eutrema salsugineum HOM05D006009 ORTHO05D007389 3.5e-231 805.4 723 62.5
THA.LOC104806651 Tarenaya hassleriana HOM05D006009 ORTHO05D007389 1.0e-230 803.9 729 63.2
Lsat_1_v5_gn_5_104280 Lactuca sativa HOM05D006009 ORTHO05D007389 3.9e-230 802.0 720 63.6
AT5G49880 Arabidopsis thaliana HOM05D006009 ORTHO05D007389 1.3e-228 797.0 726 62.4
BraSC37t46134Z Brassica rapa HOM05D006009 ORTHO05D007389 5.3e-227 791.6 724 63.1
Cc02_g23590 Coffea canephora HOM05D006009 ORTHO05D007389 1.7e-225 786.6 729 61.6
Carub.0008s0974 Capsella rubella HOM05D006009 ORTHO05D007389 2.2e-225 786.2 728 62.0
HanXRQChr10g0301411 Helianthus annuus HOM05D006009 ORTHO05D007389 1.9e-224 783.1 720 61.8
A10p08680 Brassica napus HOM05D006009 ORTHO05D007389 4.6e-223 778.5 724 62.3
Sc03g0005770 Simmondsia chinensis HOM05D006009 ORTHO05D007389 6.1e-223 778.1 725 62.1
FAN08G0569 Fragaria x ananassa HOM05D006009 ORTHO05D007389 3.3e-221 772.3 795 59.7
Aqoxy6G00035 Aquilegia oxysepala HOM05D006009 ORTHO05D007389 9.7e-221 770.8 738 60.7
Peaxi162Scf00011g01924 Petunia axillaris HOM05D006009 ORTHO05D007389 9.7e-221 770.8 727 63.0
SGA_v2.0_scaffold131G34411 Striga asiatica HOM05D006009 ORTHO05D007389 1.7e-220 770.0 733 61.3
PSO017G1873 Papaver somniferum HOM05D006009 ORTHO05D007389 2.2e-220 769.6 726 62.0
ECA234G2369 Erigeron canadensis HOM05D006009 ORTHO05D007389 2.4e-219 766.1 713 60.7
MSTRG.16468 Avicennia marina HOM05D006009 ORTHO05D007389 7.7e-218 761.1 699 64.7
BcaC04g20834 Brassica carinata HOM05D006009 ORTHO05D007389 7.7e-218 761.1 722 60.9
vmacro01680 Vaccinium macrocarpon HOM05D006009 ORTHO05D007389 1.0e-217 760.8 818 56.6
Migut.B00722 Erythranthe guttata HOM05D006009 ORTHO05D007389 1.4e-216 756.9 734 63.2
C09p38660 Brassica napus HOM05D006009 ORTHO05D007389 9.4e-216 754.2 724 60.9
BolC9t56722H Brassica oleracea HOM05D006009 ORTHO05D007389 9.4e-216 754.2 724 60.9
MBI03_g05191_MAGBIO Magnolia biondii HOM05D006009 ORTHO05D007389 9.4e-216 754.2 725 61.1
Nn5g27199 Nelumbo nucifera HOM05D006009 ORTHO05D007389 1.3e-212 743.8 721 65.9
Gohir.A06G144400 Gossypium hirsutum HOM05D006009 ORTHO05D007389 8.2e-212 741.1 728 63.3
Potri.004G228900 Populus trichocarpa HOM05D006009 ORTHO05D007389 1.1e-211 740.7 726 61.3
Lj5C283T7 Lonicera japonica HOM05D006009 ORTHO05D007389 1.9e-208 729.9 718 61.7
FAN04G2183 Fragaria x ananassa HOM05D006009 ORTHO05D007389 2.2e-204 716.5 661 64.0
DCAR_001725 Daucus carota HOM05D006009 ORTHO05D007389 2.0e-202 709.9 693 60.6
Aa31sc62G20 Aethionema arabicum HOM05D006009 ORTHO05D007389 7.7e-202 708.0 722 57.6
PSO170G2218 Papaver somniferum HOM05D006009 ORTHO05D007389 1.7e-201 706.8 698 62.8
Ah.03g136790 Amaranthus hybridus HOM05D006009 ORTHO05D007389 3.0e-198 696.0 717 57.6
AUR62042641 Chenopodium quinoa HOM05D006009 ORTHO05D007389 1.6e-191 673.7 744 55.4
unitig_8.g4550 Utricularia gibba HOM05D006009 ORTHO05D007389 2.6e-189 666.4 668 57.2
EL10Ac6g13997 Beta vulgaris HOM05D006009 ORTHO05D007389 1.1e-184 651.0 776 52.7
AUR62032470 Chenopodium quinoa HOM05D006009 ORTHO05D007389 9.5e-184 647.9 724 57.2
ATR1089G153 Amborella trichopoda HOM05D006009 ORTHO05D007389 4.9e-180 635.6 728 52.6
Os01g0877300 Oryza sativa ssp. japonica HOM05D006009 ORTHO05D007389 8.3e-172 608.2 724 50.3
Oeu043610.2 Olea europaea HOM05D006009 ORTHO05D007389 1.9e-168 597.0 670 55.1
CANSAT01G0444 Cannabis sativa HOM05D006009 ORTHO05D007389 3.9e-161 572.8 595 58.7
HPP92_003614 Vanilla planifolia HOM05D006009 ORTHO05D007389 4.3e-160 569.3 722 50.0
CDE05G2940 Ceratophyllum demersum HOM05D006009 ORTHO05D007389 1.8e-150 537.3 577 55.6
Cpa.g.sc173.18 Carica papaya HOM05D006009 ORTHO05D007389 2.1e-138 497.3 359 77.2
FAN18G4220 Fragaria x ananassa HOM05D006009 ORTHO05D007389 1.0e-137 495.0 548 55.8
Manes.10G107000 Manihot esculenta HOM05D006009 ORTHO05D007389 2.1e-135 487.3 425 65.6
Sed0013076 Sechium edule HOM05D006009 ORTHO05D007389 4.6e-130 469.5 577 52.0
CAN.G855.52 Capsicum annuum HOM05D006009 ORTHO05D007389 5.3e-126 456.1 363 71.6
GSVIVG01023148001 Vitis vinifera HOM05D006009 ORTHO05D007389 8.7e-121 438.7 440 61.4
GSVIVG01023147001 Vitis vinifera HOM05D006009 ORTHO05D007389 5.8e-117 426.0 299 76.6
Oeu028479.1 Olea europaea HOM05D006009 ORTHO05D007389 1.8e-105 387.9 264 77.7
CAN.G855.51 Capsicum annuum HOM05D006009 ORTHO05D007389 1.1e-99 368.6 372 56.7
Pp3c17_20400 Physcomitrium patens HOM05D006009 ORTHO05D007389 1.9e-91 341.3 774 34.4
ECA234G2367 Erigeron canadensis HOM05D000005 ORTHO05D000012 2.1e-82 311.2 343 57.1
Mapoly0034s0031 Marchantia polymorpha HOM05D006009 ORTHO05D007389 2.7e-77 294.3 668 31.6
Zm00001eb145920 Zea mays HOM05D006009 ORTHO05D007389 4.5e-77 293.5 452 43.8
Sabra01G0173900 Salix brachista HOM05D006009 ORTHO05D007389 2.5e-75 287.7 503 43.7
AagrBONN_evm.TU.Sc2ySwM_228.1218 Anthoceros agrestis HOM05D006009 ORTHO05D007389 1.4e-73 282.0 727 30.8
Cpa.g.sc173.20 Carica papaya HOM05D006009 ORTHO05D007389 4.1e-70 270.4 373 48.5
SMO343G0014 Selaginella moellendorffii HOM05D006009 ORTHO05D007389 5.5e-67 260.0 699 32.0
CBR_g38734 Chara braunii HOM05D006009 ORTHO05D007389 1.0e-65 255.8 713 29.5
Oeu028480.1 Olea europaea HOM05D006009 ORTHO05D007389 1.4e-65 255.4 271 55.0
SHI05061 Sapria himalayana HOM05D000030 ORTHO05D000009 3.0e-65 254.2 667 34.6
Psat6g226760 Pisum sativum HOM05D003335 ORTHO05D003853 3.1e-41 174.5 107 89.7
Eucgr.D02407 Eucalyptus grandis HOM05D006009 ORTHO05D007389 2.4e-33 148.3 131 63.4
SEGI_34522 Sequoiadendron giganteum HOM05D006009 ORTHO05D007389 4.3e-27 127.5 84 71.4
SEGI_19376 Sequoiadendron giganteum HOM05D006009 ORTHO05D007389 9.9e-24 116.3 110 57.3
Glyma.14G105500 Glycine max HOM05D006009 ORTHO05D007389 3.0e-20 104.8 70 78.6
SEGI_26370 Sequoiadendron giganteum HOM05D006009 ORTHO05D007389 3.0e-20 104.8 124 50.0
PRCOL_00003389 Prasinoderma coloniale HOM05D006009 ORTHO05D007389 2.1e-18 98.6 502 22.1
Hund15371 Selenicereus undatus HOM05D006009 ORTHO05D007389 2.8e-18 98.2 163 42.9
SEGI_01187 Sequoiadendron giganteum HOM05D006009 ORTHO05D007389 6.9e-17 93.6 172 36.6
MBI18_g16980_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 2.9e-15 88.2 55 85.5
QL08p014094 Quercus lobata HOM05D006009 ORTHO05D007389 4.9e-15 87.4 105 50.5
Oeu028483.1 Olea europaea HOM05D006009 ORTHO05D007389 8.4e-15 86.7 99 54.5
MCO13G251 Micromonas commoda HOM05D006009 ORTHO05D007389 1.6e-13 82.4 118 39.8
SMO343G0089 Selaginella moellendorffii HOM05D006009 ORTHO05D007389 2.7e-13 81.6 170 33.5
MBI18_g20174_MAGBIO Magnolia biondii HOM05D006009 ORTHO05D007389 3.9e-12 77.8 59 67.8
GSVIVG01023072001 Vitis vinifera HOM05D001300 ORTHO05D014438 6.7e-12 77.0 86 53.5
MBI06_g11892_MAGBIO Magnolia biondii HOM05D006009 ORTHO05D004199 7.4e-11 73.6 100 48.0
Zm00001eb351220 Zea mays HOM05D006009 ORTHO05D007389 1.6e-10 72.4 55 69.1
RhsimUnG0219700 Rhododendron simsii HOM05D006009 ORTHO05D007389 4.9e-07 60.8 41 75.6
MD15G1442500 Malus domestica HOM05D006009 ORTHO05D007389 8.4e-07 60.1 43 62.8


User provided reference genes

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