Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G5939 Trifolium pratense HOM05D004217 ORTHO05D005561 8.9e-154 547.0 290 100.0
TPR.G15791 Trifolium pratense HOM05D004217 ORTHO05D005561 2.5e-148 528.9 290 96.2
Ca_16232_v3 Cicer arietinum L. HOM05D004217 ORTHO05D005561 9.2e-143 510.4 290 92.8
Psat5g112680 Pisum sativum HOM05D004217 ORTHO05D005561 1.5e-137 493.0 290 89.3
Medtr3g079220 Medicago truncatula HOM05D004217 ORTHO05D005561 2.0e-137 492.7 290 89.7
Lj6g0025691 Lotus japonicus HOM05D004217 ORTHO05D005561 9.9e-137 490.3 291 88.7
VMungo0464G0563 Vigna mungo HOM05D004217 ORTHO05D005561 5.1e-133 478.0 279 89.6
arahy.Tifrunner.gnm1.ann1.GAG45E Arachis hypogaea HOM05D004217 ORTHO05D005561 5.6e-132 474.6 296 85.8
arahy.Tifrunner.gnm1.ann1.35MU93 Arachis hypogaea HOM05D004217 ORTHO05D005561 7.3e-132 474.2 296 85.8
Lalb_Chr04g0255801 Lupinus albus HOM05D004217 ORTHO05D005561 1.3e-131 473.4 295 85.8
Phvul.004G165200 Phaseolus vulgaris HOM05D004217 ORTHO05D005561 3.6e-131 471.9 279 89.2
Lalb_Chr17g0341031 Lupinus albus HOM05D004217 ORTHO05D005561 4.6e-126 454.9 284 84.5
Glyma.09G192100 Glycine max HOM05D004217 ORTHO05D005561 6.6e-125 451.1 278 86.0
Glyma.07G084800 Glycine max HOM05D004217 ORTHO05D005561 1.1e-124 450.3 278 86.0
Gohir.A11G057400 Gossypium hirsutum HOM05D004217 ORTHO05D005561 7.6e-121 437.6 288 79.2
Gohir.D11G061600 Gossypium hirsutum HOM05D004217 ORTHO05D005561 7.6e-121 437.6 288 79.2
Gorai.007G066400 Gossypium raimondii HOM05D004217 ORTHO05D005561 7.6e-121 437.6 288 79.2
Duzib264G1114 Durio zibethinus HOM05D004217 ORTHO05D005561 2.9e-120 435.6 288 79.2
TWI53G1501 Tripterygium wilfordii HOM05D004217 ORTHO05D005561 2.9e-120 435.6 279 81.7
TWI77G0241 Tripterygium wilfordii HOM05D004217 ORTHO05D005561 4.9e-120 434.9 279 81.7
CSS0007689 Camellia sinensis var. sinensis HOM05D004217 ORTHO05D005561 1.4e-119 433.3 284 78.5
Cfa016692 Carpinus fangiana HOM05D004217 ORTHO05D005561 1.9e-119 433.0 284 79.9
CiPaw.10G038800 Carya illinoinensis HOM05D004217 ORTHO05D005561 1.9e-119 433.0 284 80.3
Manes.09G007800 Manihot esculenta HOM05D004217 ORTHO05D005561 4.2e-119 431.8 284 78.5
Thecc.01G136700 Theobroma cacao HOM05D004217 ORTHO05D005561 4.2e-119 431.8 287 78.7
GSVIVG01027868001 Vitis vinifera HOM05D004217 ORTHO05D005561 9.3e-119 430.6 284 78.2
Lsat_1_v5_gn_8_82561 Lactuca sativa HOM05D004217 ORTHO05D005561 1.2e-118 430.3 281 79.0
vmacro07818 Vaccinium macrocarpon HOM05D004217 ORTHO05D005561 1.2e-118 430.3 278 80.2
Actinidia39171 Actinidia chinensis HOM05D004217 ORTHO05D005561 1.6e-118 429.9 284 78.2
CANSAT78G1576 Cannabis sativa HOM05D004217 ORTHO05D005561 1.6e-118 429.9 279 81.0
Lj2A395G21 Lonicera japonica HOM05D004217 ORTHO05D005561 2.7e-118 429.1 284 77.8
Dinv34387 Davidia involucrata HOM05D004217 ORTHO05D005561 3.5e-118 428.7 284 78.5
Ciclev10021431m.g Citrus clementina HOM05D004217 ORTHO05D005561 2.3e-117 426.0 288 78.1
SGA_v2.0_scaffold273G46404 Striga asiatica HOM05D004217 ORTHO05D005561 2.3e-117 426.0 290 76.6
Cpa.g.sc5.203 Carica papaya HOM05D004217 ORTHO05D005561 5.1e-117 424.9 284 77.1
HanXRQChr06g0176941 Helianthus annuus HOM05D004217 ORTHO05D005561 8.7e-117 424.1 281 77.6
HanXRQChr10g0316411 Helianthus annuus HOM05D004217 ORTHO05D005561 8.7e-117 424.1 281 77.6
Sed0000264 Sechium edule HOM05D004217 ORTHO05D005561 9.6e-116 420.6 278 79.5
Potri.006G046200 Populus trichocarpa HOM05D004217 ORTHO05D005561 1.3e-115 420.2 278 77.7
RhsimUnG0216700 Rhododendron simsii HOM05D000657 ORTHO05D002092 1.3e-115 420.2 283 78.4
RhsimUnG0219800 Rhododendron simsii HOM05D004217 ORTHO05D005561 1.3e-115 420.2 283 78.4
DCAR_020547 Daucus carota HOM05D004217 ORTHO05D005561 1.6e-115 419.9 287 77.0
Gohir.D03G072900 Gossypium hirsutum HOM05D004217 ORTHO05D005561 1.6e-115 419.9 267 80.9
MELO3C019047.2 Cucumis melo HOM05D004217 ORTHO05D005561 2.1e-115 419.5 287 76.7
CsaV3_4G027820 Cucumis sativus L. HOM05D004217 ORTHO05D005561 2.1e-115 419.5 287 77.0
CsaV3_3G041090 Cucumis sativus L. HOM05D004217 ORTHO05D005561 2.8e-115 419.1 287 76.7
Eucgr.A00412 Eucalyptus grandis HOM05D004217 ORTHO05D005561 4.8e-115 418.3 279 78.5
Migut.K00125 Erythranthe guttata HOM05D004217 ORTHO05D005561 1.1e-114 417.2 278 77.3
Gohir.A03G048200 Gossypium hirsutum HOM05D004217 ORTHO05D005561 1.4e-114 416.8 263 81.7
Gohir.D11G169000 Gossypium hirsutum HOM05D004217 ORTHO05D005561 1.8e-114 416.4 263 82.1
THA.LOC104803276 Tarenaya hassleriana HOM05D004217 ORTHO05D005561 3.1e-114 415.6 287 75.6
THA.LOC104824417 Tarenaya hassleriana HOM05D004217 ORTHO05D005561 4.0e-114 415.2 285 75.1
Gohir.A03G146300 Gossypium hirsutum HOM05D004217 ORTHO05D005561 5.3e-114 414.8 263 81.4
RcHm_v2.0_Chr2g0125061 Rosa chinensis HOM05D004217 ORTHO05D005561 6.9e-114 414.5 288 75.3
Sc13g0001310 Simmondsia chinensis HOM05D004217 ORTHO05D005561 6.9e-114 414.5 284 75.4
QL07p008431 Quercus lobata HOM05D004217 ORTHO05D005561 5.8e-113 411.4 313 71.6
Haze_19719 Corylus avellana HOM05D004217 ORTHO05D005561 7.6e-113 411.0 320 71.2
Oeu029495.1 Olea europaea HOM05D004217 ORTHO05D005561 7.6e-113 411.0 280 76.8
AUR62031989 Chenopodium quinoa HOM05D004217 ORTHO05D005561 1.3e-112 410.2 278 74.8
C03p27740 Brassica napus HOM05D004217 ORTHO05D005561 1.7e-112 409.8 284 73.9
GSVIVG01034596001 Vitis vinifera HOM05D004217 ORTHO05D005561 2.2e-112 409.5 278 75.9
EL10Ac3g07207 Beta vulgaris HOM05D004217 ORTHO05D005561 3.8e-112 408.7 278 75.2
Hund24631 Selenicereus undatus HOM05D004217 ORTHO05D005561 4.9e-112 408.3 289 74.7
AUR62030333 Chenopodium quinoa HOM05D004217 ORTHO05D005561 6.5e-112 407.9 278 74.8
ClCG04G004230 Citrullus lanatus HOM05D004217 ORTHO05D005561 6.5e-112 407.9 316 70.3
TAR623G0725 Trochodendron aralioides HOM05D004217 ORTHO05D005561 6.5e-112 407.9 287 74.2
FvH4_6g25170 Fragaria vesca HOM05D004217 ORTHO05D005561 8.4e-112 407.5 283 74.9
FAN14G1007 Fragaria x ananassa HOM05D004217 ORTHO05D005561 8.4e-112 407.5 283 74.9
Nn7g37855 Nelumbo nucifera HOM05D004217 ORTHO05D005561 8.4e-112 407.5 284 74.6
PGR142G4280 Punica granatum HOM05D004217 ORTHO05D005561 8.4e-112 407.5 284 75.7
Solyc10g079740.2 Solanum lycopersicum HOM05D004217 ORTHO05D005561 8.4e-112 407.5 278 74.8
Sopen10g030370 Solanum pennellii HOM05D004217 ORTHO05D005561 8.4e-112 407.5 278 74.8
Ah.04g151110 Amaranthus hybridus HOM05D004217 ORTHO05D005561 1.1e-111 407.1 276 75.4
Carub.0004s2365 Capsella rubella HOM05D004217 ORTHO05D005561 1.4e-111 406.8 284 73.6
Nn7g36831 Nelumbo nucifera HOM05D004217 ORTHO05D005561 1.4e-111 406.8 284 74.6
PGSC0003DMG400029850 Solanum tuberosum HOM05D004217 ORTHO05D005561 3.2e-111 405.6 278 74.5
A03p23240 Brassica napus HOM05D004217 ORTHO05D005561 4.2e-111 405.2 284 73.6
CARHR136470 Cardamine hirsuta HOM05D004217 ORTHO05D005561 7.1e-111 404.4 287 73.2
MD14G1084500 Malus domestica HOM05D004217 ORTHO05D005561 7.1e-111 404.4 279 74.6
Peaxi162Scf01378g00115 Petunia axillaris HOM05D004217 ORTHO05D005561 9.3e-111 404.1 277 74.4
FAN09G3751 Fragaria x ananassa HOM05D004217 ORTHO05D005561 1.2e-110 403.7 283 74.2
Cc06_g18810 Coffea canephora HOM05D004217 ORTHO05D005561 1.6e-110 403.3 280 74.6
Atru.chr1.1483 Acer truncatum HOM05D004217 ORTHO05D005561 2.1e-110 402.9 288 73.6
BcaB01g03471 Brassica carinata HOM05D004217 ORTHO05D005561 2.1e-110 402.9 279 74.6
BcaC01g05340 Brassica carinata HOM05D004217 ORTHO05D005561 2.1e-110 402.9 284 73.2
CAN.G322.6 Capsicum annuum HOM05D004217 ORTHO05D005561 2.7e-110 402.5 278 74.5
Aa31LG5G11710 Aethionema arabicum HOM05D004217 ORTHO05D005561 4.6e-110 401.7 281 74.0
Thhalv10017004m.g Eutrema salsugineum HOM05D004217 ORTHO05D005561 4.6e-110 401.7 284 73.2
AT2G41350 Arabidopsis thaliana HOM05D004217 ORTHO05D005561 6.0e-110 401.4 284 72.5
Peaxi162Scf00620g00012 Petunia axillaris HOM05D004217 ORTHO05D005561 6.0e-110 401.4 277 74.4
Sp4g23650 Schrenkiella parvula HOM05D004217 ORTHO05D005561 7.9e-110 401.0 284 73.2
BraA03t11543Z Brassica rapa HOM05D004217 ORTHO05D005561 1.0e-109 400.6 285 73.3
unitig_748.g7226 Utricularia gibba HOM05D004217 ORTHO05D005561 2.3e-109 399.4 283 71.4
AL4G39350 Arabidopsis lyrata HOM05D004217 ORTHO05D005561 3.9e-109 398.7 285 72.6
BolC3t15143H Brassica oleracea HOM05D004217 ORTHO05D005561 5.1e-109 398.3 285 73.0
SalBow1G4717 Salvia bowleyana HOM05D004217 ORTHO05D005561 5.1e-109 398.3 290 73.4
MD12G1092800 Malus domestica HOM05D004217 ORTHO05D005561 6.7e-109 397.9 279 73.5
Prupe.7G043700 Prunus persica HOM05D004217 ORTHO05D005561 1.9e-108 396.4 279 73.8
Gohir.A12G042000 Gossypium hirsutum HOM05D004217 ORTHO05D005561 2.5e-108 396.0 263 79.8
Sc25g0005400 Simmondsia chinensis HOM05D004217 ORTHO05D005561 2.5e-108 396.0 282 72.3
MSTRG.15652 Avicennia marina HOM05D004217 ORTHO05D005561 3.3e-108 395.6 318 66.7
MBI15_g40529_MAGBIO Magnolia biondii HOM05D004217 ORTHO05D005561 4.3e-108 395.2 284 71.8
MBI14_g19459_MAGBIO Magnolia biondii HOM05D004217 ORTHO05D005561 5.7e-108 394.8 287 71.4
Aqoxy2G04056 Aquilegia oxysepala HOM05D004217 ORTHO05D005561 7.4e-108 394.4 280 73.9
Gohir.D11G296900 Gossypium hirsutum HOM05D004217 ORTHO05D005561 4.1e-106 388.7 282 73.8
PSO339G2795 Papaver somniferum HOM05D004217 ORTHO05D005561 5.9e-105 384.8 278 71.6
ATR0580G123 Amborella trichopoda HOM05D004217 ORTHO05D005561 3.8e-104 382.1 275 73.8
TAR369G0413 Trochodendron aralioides HOM05D004217 ORTHO05D005561 3.8e-104 382.1 288 70.5
PSO384G3185 Papaver somniferum HOM05D004217 ORTHO05D005561 5.5e-103 378.3 289 69.2
QL07p008692 Quercus lobata HOM05D004217 ORTHO05D005561 7.2e-103 377.9 341 63.6
Sabra06G0031800 Salix brachista HOM05D004217 ORTHO05D005561 9.3e-103 377.5 278 72.3
Gohir.A07G124200 Gossypium hirsutum HOM05D004217 ORTHO05D005561 1.2e-102 377.1 263 77.2
CSS0039334 Camellia sinensis var. sinensis HOM05D004217 ORTHO05D005561 3.9e-101 372.1 284 70.1
Actinidia20826 Actinidia chinensis HOM05D004217 ORTHO05D005561 1.5e-100 370.2 276 69.2
CDE04G1366 Ceratophyllum demersum HOM05D004217 ORTHO05D005561 2.8e-99 365.9 277 68.6
Gohir.A02G062500 Gossypium hirsutum HOM05D004217 ORTHO05D005561 6.3e-99 364.8 229 81.2
vmacro08529 Vaccinium macrocarpon HOM05D004217 ORTHO05D005561 8.5e-96 354.4 287 64.8
HPP92_018983 Vanilla planifolia HOM05D004217 ORTHO05D005561 9.4e-95 350.9 284 64.4
Nitab4.5_0000636g0010 Nicotiana tabacum HOM05D004217 ORTHO05D005561 4.6e-94 348.6 287 64.8
Nitab4.5_0000571g0060 Nicotiana tabacum HOM05D004217 ORTHO05D005561 1.0e-93 347.4 287 64.8
Sc13g0001330 Simmondsia chinensis HOM05D004217 ORTHO05D005561 1.4e-93 347.1 245 72.7
COL.COLO4_35807 Corchorus olitorius HOM05D004217 ORTHO05D005561 2.3e-93 346.3 288 64.9
SMO118G0157 Selaginella moellendorffii HOM05D004217 ORTHO05D005561 3.0e-93 345.9 278 62.9
Rhsim04G0175000 Rhododendron simsii HOM05D004217 ORTHO05D005561 1.1e-92 344.0 274 65.3
CAN.G541.30 Capsicum annuum HOM05D004217 ORTHO05D005561 1.5e-92 343.6 278 65.5
Hma1.2p1_0521F.1_g171490 Hydrangea macrophylla HOM05D004217 ORTHO05D005561 1.5e-92 343.6 211 84.8
Nitab4.5_0001874g0050 Nicotiana tabacum HOM05D004217 ORTHO05D005561 1.5e-92 343.6 287 64.5
SalBow6G4102 Salvia bowleyana HOM05D004217 ORTHO05D005561 2.0e-89 333.2 289 60.6
Pp3c1_31980 Physcomitrium patens HOM05D004217 ORTHO05D005561 5.9e-89 331.6 275 62.9
DCAR_027531 Daucus carota HOM05D004217 ORTHO05D005561 1.6e-86 323.6 287 64.1
AagrBONN_evm.TU.Sc2ySwM_362.1682 Anthoceros agrestis HOM05D004217 ORTHO05D005561 2.2e-80 303.1 281 53.7
EL10Ac6g14020 Beta vulgaris HOM05D004217 ORTHO05D005561 2.7e-78 296.2 265 62.6
Zm00001eb178240 Zea mays HOM05D004217 ORTHO05D005561 6.7e-77 291.6 301 54.8
Eucgr.A00321 Eucalyptus grandis HOM05D004217 ORTHO05D005561 1.3e-75 287.3 200 75.5
SEGI_06876 Sequoiadendron giganteum HOM05D004217 ORTHO05D005561 7.7e-73 278.1 275 52.7
SHI05064 Sapria himalayana HOM05D004217 ORTHO05D005561 5.7e-68 261.9 199 66.8
ECA236G0163 Erigeron canadensis HOM05D004217 ORTHO05D005561 1.4e-66 257.3 162 79.0
CDE07G0389 Ceratophyllum demersum HOM05D004217 ORTHO05D005561 2.4e-66 256.5 210 64.8
Os08g0240600 Oryza sativa ssp. japonica HOM05D004217 ORTHO05D005561 1.6e-65 253.8 254 55.9
Mapoly0239s0006 Marchantia polymorpha HOM05D004217 ORTHO05D005561 1.2e-62 244.2 276 50.7
Dinv08497 Davidia involucrata HOM05D004217 ORTHO05D005561 5.2e-61 238.8 185 71.4
CBR_g38257 Chara braunii HOM05D004217 ORTHO05D005561 1.2e-54 217.6 252 44.0
Actinidia32317 Actinidia chinensis HOM05D004217 ORTHO05D005561 6.1e-54 215.3 162 69.1
Carub.0004s0112 Capsella rubella HOM05D004217 ORTHO05D005561 1.9e-42 177.2 169 61.5
A04p31520 Brassica napus HOM05D004217 ORTHO05D005561 2.0e-41 173.7 177 56.5
BraA04t18609Z Brassica rapa HOM05D004217 ORTHO05D005561 2.0e-41 173.7 177 56.5
C04p68950 Brassica napus HOM05D004217 ORTHO05D005561 2.0e-36 157.1 106 72.6
BolC4t28396H Brassica oleracea HOM05D004217 ORTHO05D005561 2.0e-36 157.1 106 72.6
BcaC02g12897 Brassica carinata HOM05D004217 ORTHO05D005561 1.1e-31 141.4 97 71.1
SHI39628 Sapria himalayana HOM05D004217 ORTHO05D005561 1.8e-29 134.0 79 82.3
Peaxi162Scf01233g00007 Petunia axillaris HOM05D004217 ORTHO05D005561 4.4e-28 129.4 94 70.2
Sabra16G0048200 Salix brachista HOM05D000002 ORTHO05D000047 5.4e-26 122.5 136 52.2
MD12G1067200 Malus domestica HOM05D004217 ORTHO05D005561 2.8e-22 110.2 83 65.1
arahy.Tifrunner.gnm1.ann1.XNH8SK Arachis hypogaea HOM05D004217 ORTHO05D016559 3.4e-20 103.2 69 75.4
arahy.Tifrunner.gnm1.ann1.505PCM Arachis hypogaea HOM05D003289 ORTHO05D016559 1.7e-19 100.9 83 66.3
arahy.Tifrunner.gnm1.ann1.CY1WZS Arachis hypogaea HOM05D004217 ORTHO05D016559 5.4e-18 95.9 74 66.2
arahy.Tifrunner.gnm1.ann1.5F2ED3 Arachis hypogaea HOM05D004217 ORTHO05D016559 1.2e-17 94.7 69 72.5
MBI15_g39623_MAGBIO Magnolia biondii HOM05D004217 ORTHO05D016559 1.2e-17 94.7 84 59.5
arahy.Tifrunner.gnm1.ann1.2C13MW Arachis hypogaea HOM05D004217 ORTHO05D016559 3.5e-17 93.2 77 63.6
AT2G21980 Arabidopsis thaliana HOM05D004217 ORTHO05D005561 1.3e-16 91.3 58 79.3
FAN17G2754 Fragaria x ananassa HOM05D004217 ORTHO05D005561 2.8e-14 83.6 52 84.6
AL7G43680 Arabidopsis lyrata HOM05D004217 ORTHO05D026831 1.2e-12 78.2 69 58.0
AL7G51080 Arabidopsis lyrata HOM05D004217 ORTHO05D080694 1.2e-12 78.2 69 59.4
Aqoxy5G00134 Aquilegia oxysepala HOM05D004217 ORTHO05D016559 1.3e-11 74.7 83 49.4
AL4G11300 Arabidopsis lyrata HOM05D004217 ORTHO05D005561 8.4e-11 72.0 58 60.3
FAN22G2236 Fragaria x ananassa HOM05D004217 ORTHO05D005561 1.1e-10 71.6 68 64.7
BcaB04g18853 Brassica carinata HOM05D004217 ORTHO05D094331 1.8e-08 64.3 44 68.2
BcaB06g29630 Brassica carinata HOM05D004217 ORTHO05D095231 1.1e-07 61.6 43 67.4
BcaB06g29631 Brassica carinata HOM05D002050 ORTHO05D001949 1.1e-07 61.6 43 67.4
ATR0564G208 Amborella trichopoda HOM05D004217 ORTHO05D064567 6.2e-06 55.8 100 37.0


User provided reference genes

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