Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G5928 Trifolium pratense HOM05D003468 ORTHO05D002806 1.1e-265 919.5 467 100.0
Psat5g003000 Pisum sativum HOM05D003468 ORTHO05D002806 5.6e-89 332.4 467 45.6
Medtr3g117790 Medicago truncatula HOM05D003468 ORTHO05D002806 4.7e-56 223.0 479 37.4
Medtr3g116690 Medicago truncatula HOM05D003468 ORTHO05D002806 1.1e-55 221.9 480 37.1
Phvul.009G025400 Phaseolus vulgaris HOM05D003468 ORTHO05D002806 2.8e-48 197.2 464 36.0
QL02p099821 Quercus lobata HOM05D003468 ORTHO05D002806 1.9e-41 174.5 485 34.2
CSS0029508 Camellia sinensis var. sinensis HOM05D003468 ORTHO05D002806 4.8e-40 169.9 486 30.2
QL01p024883 Quercus lobata HOM05D003468 ORTHO05D002806 5.3e-39 166.4 518 29.5
Dinv28729 Davidia involucrata HOM05D003468 ORTHO05D002806 9.9e-38 162.2 487 30.0
GSVIVG01024564001 Vitis vinifera HOM05D003468 ORTHO05D002806 1.3e-37 161.8 466 30.0
Glyma.06G216400 Glycine max HOM05D003468 ORTHO05D002806 1.7e-37 161.4 485 31.1
vmacro10619 Vaccinium macrocarpon HOM05D003468 ORTHO05D002806 8.4e-37 159.1 488 30.5
Glyma.04G148800 Glycine max HOM05D003468 ORTHO05D002806 1.1e-36 158.7 454 31.7
arahy.Tifrunner.gnm1.ann1.UJZR4Z Arachis hypogaea HOM05D003468 ORTHO05D002806 3.2e-36 157.1 526 29.5
VMungo0540G0681 Vigna mungo HOM05D003468 ORTHO05D002806 3.2e-36 157.1 505 29.3
Psat5g148920 Pisum sativum HOM05D003468 ORTHO05D002806 2.7e-35 154.1 531 29.6
Actinidia34492 Actinidia chinensis HOM05D003468 ORTHO05D002806 3.5e-35 153.7 489 27.6
Lj2A1101T50 Lonicera japonica HOM05D003468 ORTHO05D002806 6.7e-34 149.4 490 28.2
Rhsim01G0242800 Rhododendron simsii HOM05D003468 ORTHO05D002806 4.3e-33 146.7 481 28.9
Nn2g10321 Nelumbo nucifera HOM05D003468 ORTHO05D002806 7.4e-33 146.0 454 29.1
arahy.Tifrunner.gnm1.ann1.DRQC3V Arachis hypogaea HOM05D003468 ORTHO05D002806 2.1e-32 144.4 490 29.2
Nitab4.5_0000002g0180 Nicotiana tabacum HOM05D003468 ORTHO05D002806 2.8e-32 144.1 448 28.6
arahy.Tifrunner.gnm1.ann1.NCBN9K Arachis hypogaea HOM05D003468 ORTHO05D002806 3.7e-32 143.7 526 28.9
Phvul.006G078200 Phaseolus vulgaris HOM05D003468 ORTHO05D002806 1.4e-31 141.7 505 29.9
Ca_15053_v3 Cicer arietinum L. HOM05D003468 ORTHO05D002806 3.1e-31 140.6 516 28.1
Glyma.18G052700 Glycine max HOM05D003468 ORTHO05D002806 3.1e-31 140.6 506 29.2
Nitab4.5_0002620g0010 Nicotiana tabacum HOM05D003468 ORTHO05D002806 4.0e-31 140.2 449 26.9
CANSAT54G1733 Cannabis sativa HOM05D003468 ORTHO05D002806 1.5e-30 138.3 518 28.0
Manes.10G065600 Manihot esculenta HOM05D003468 ORTHO05D002806 1.5e-30 138.3 469 30.9
Sed0021873 Sechium edule HOM05D003468 ORTHO05D002806 2.0e-30 137.9 538 24.5
TAR633G1116 Trochodendron aralioides HOM05D003468 ORTHO05D002806 2.6e-30 137.5 494 27.7
Glyma.11G186600 Glycine max HOM05D003468 ORTHO05D002806 3.4e-30 137.1 489 29.0
CsaV3_6G013110 Cucumis sativus L. HOM05D003468 ORTHO05D002806 4.5e-30 136.7 540 27.2
Eucgr.B00490 Eucalyptus grandis HOM05D003468 ORTHO05D002806 4.5e-30 136.7 495 28.1
arahy.Tifrunner.gnm1.ann1.596HBI Arachis hypogaea HOM05D003468 ORTHO05D002806 7.6e-30 136.0 512 28.1
HanXRQChr16g0522621 Helianthus annuus HOM05D003468 ORTHO05D002806 1.0e-29 135.6 492 27.6
Ca_15309_v3 Cicer arietinum L. HOM05D003468 ORTHO05D002806 2.2e-29 134.4 465 27.5
Sed0014984 Sechium edule HOM05D003468 ORTHO05D002806 2.9e-29 134.0 549 27.7
TPR.G10431 Trifolium pratense HOM05D003468 ORTHO05D002806 3.8e-29 133.7 537 27.0
Haze_24464 Corylus avellana HOM05D003468 ORTHO05D002806 1.1e-28 132.1 587 25.7
Hma1.2p1_0170F.1_g075010 Hydrangea macrophylla HOM05D003468 ORTHO05D002806 2.5e-28 131.0 510 28.8
CAN.G874.78 Capsicum annuum HOM05D003468 ORTHO05D002806 1.2e-27 128.6 466 26.8
Sc09g0001380 Simmondsia chinensis HOM05D003468 ORTHO05D002806 1.6e-27 128.3 483 26.3
MELO3C026878.2 Cucumis melo HOM05D003468 ORTHO05D002806 2.1e-27 127.9 546 25.3
Eucgr.B00647 Eucalyptus grandis HOM05D003468 ORTHO05D002806 2.7e-27 127.5 511 27.4
Nn3g19626 Nelumbo nucifera HOM05D003468 ORTHO05D002806 2.7e-27 127.5 453 28.3
MSTRG.17916 Avicennia marina HOM05D003468 ORTHO05D002806 6.0e-27 126.3 470 28.1
CANSAT25G2600 Cannabis sativa HOM05D003468 ORTHO05D002806 6.0e-27 126.3 525 26.1
Cc01_g15290 Coffea canephora HOM05D003468 ORTHO05D002806 1.8e-26 124.8 482 24.9
Peaxi162Scf01078g00514 Petunia axillaris HOM05D003468 ORTHO05D002806 1.8e-26 124.8 507 25.2
VMungo1309G2250 Vigna mungo HOM05D003468 ORTHO05D002806 2.3e-26 124.4 453 28.9
Lsat_1_v5_gn_9_13861 Lactuca sativa HOM05D003468 ORTHO05D002806 3.9e-26 123.6 503 25.4
Hund21917 Selenicereus undatus HOM05D003468 ORTHO05D002806 3.9e-26 123.6 530 28.1
MSTRG.12708 Avicennia marina HOM05D003468 ORTHO05D002806 6.7e-26 122.9 476 28.2
TPR.G28801 Trifolium pratense HOM05D003468 ORTHO05D002806 8.7e-26 122.5 578 25.8
SGA_v2.0_scaffold120G32985 Striga asiatica HOM05D003468 ORTHO05D002806 3.3e-25 120.6 477 26.8
Peaxi162Scf00362g01055 Petunia axillaris HOM05D003468 ORTHO05D002806 1.6e-24 118.2 461 27.5
PGSC0003DMG400030385 Solanum tuberosum HOM05D003468 ORTHO05D002806 3.7e-24 117.1 477 24.7
Thecc.06G237700 Theobroma cacao HOM05D003468 ORTHO05D002806 3.7e-24 117.1 480 26.5
SGA_v2.0_scaffold77G25360 Striga asiatica HOM05D003468 ORTHO05D002806 8.2e-24 115.9 451 27.3
FvH4_3g40451 Fragaria vesca HOM05D003468 ORTHO05D002806 2.4e-23 114.4 597 25.1
Dinv12277 Davidia involucrata HOM05D003468 ORTHO05D002806 3.1e-23 114.0 369 29.0
Lalb_Chr18g0054251 Lupinus albus HOM05D003468 ORTHO05D002806 4.1e-23 113.6 633 24.3
DCAR_017858 Daucus carota HOM05D003468 ORTHO05D002806 9.0e-23 112.5 452 27.9
Lj6g0018146 Lotus japonicus HOM05D003468 ORTHO05D002806 4.5e-22 110.2 686 22.7
Ca_15313_v3 Cicer arietinum L. HOM05D003468 ORTHO05D002806 7.6e-22 109.4 187 35.8
FAN21G2193 Fragaria x ananassa HOM05D003468 ORTHO05D002806 1.3e-21 108.6 598 23.9
DCAR_026483 Daucus carota HOM05D003468 ORTHO05D002806 2.2e-21 107.8 451 25.1
Lj1g0000690 Lotus japonicus HOM05D003468 ORTHO05D002806 2.2e-21 107.8 465 24.7
ClCG02G019040 Citrullus lanatus HOM05D003468 ORTHO05D002806 8.4e-21 105.9 565 23.5
FAN11G0916 Fragaria x ananassa HOM05D003468 ORTHO05D002806 8.4e-21 105.9 606 24.8
Solyc06g082510.3 Solanum lycopersicum HOM05D003468 ORTHO05D002806 8.4e-21 105.9 469 25.6
Sopen06g033890 Solanum pennellii HOM05D003468 ORTHO05D002806 8.4e-21 105.9 469 24.7
Nitab4.5_0002759g0060 Nicotiana tabacum HOM05D003468 ORTHO05D002806 1.1e-20 105.5 448 25.7
Prupe.6G041700 Prunus persica HOM05D003468 ORTHO05D002806 4.2e-20 103.6 153 41.2
arahy.Tifrunner.gnm1.ann1.HB1RT4 Arachis hypogaea HOM05D003468 ORTHO05D002806 7.2e-20 102.8 234 34.2
Cfa021527 Carpinus fangiana HOM05D003468 ORTHO05D002806 7.2e-20 102.8 568 24.8
Oeu058241.1 Olea europaea HOM05D003468 ORTHO05D002806 7.2e-20 102.8 467 26.1
EL10Ac4g10009 Beta vulgaris HOM05D003468 ORTHO05D002806 2.1e-19 101.3 616 23.7
CDE07G0878 Ceratophyllum demersum HOM05D003468 ORTHO05D002806 2.1e-19 101.3 519 26.0
SalBow2G1693 Salvia bowleyana HOM05D003468 ORTHO05D002806 2.1e-19 101.3 481 27.7
arahy.Tifrunner.gnm1.ann1.R24AWJ Arachis hypogaea HOM05D003468 ORTHO05D002806 2.7e-19 100.9 244 32.0
BcaB08g36171 Brassica carinata HOM05D009360 ORTHO05D002806 2.7e-19 100.9 453 24.3
AUR62000285 Chenopodium quinoa HOM05D003468 ORTHO05D002806 3.5e-19 100.5 624 23.6
Medtr3g467090 Medicago truncatula HOM05D003468 ORTHO05D002806 3.5e-19 100.5 644 23.4
Peaxi162Scf00390g00336 Petunia axillaris HOM05D003468 ORTHO05D002806 4.6e-19 100.1 445 27.0
RcHm_v2.0_Chr5g0073101 Rosa chinensis HOM05D003468 ORTHO05D002806 1.0e-18 99.0 630 22.7
Potri.013G154500 Populus trichocarpa HOM05D003468 ORTHO05D002806 2.3e-18 97.8 132 45.5
Lj6g0007992 Lotus japonicus HOM05D003468 ORTHO05D002806 3.0e-18 97.4 413 24.9
QL02p029550 Quercus lobata HOM05D003468 ORTHO05D002806 3.9e-18 97.1 184 35.9
QL06p000163 Quercus lobata HOM05D003468 ORTHO05D002806 3.9e-18 97.1 184 35.9
FAN04G1909 Fragaria x ananassa HOM05D003468 ORTHO05D002806 5.1e-18 96.7 563 25.0
AUR62006633 Chenopodium quinoa HOM05D003468 ORTHO05D002806 1.1e-17 95.5 630 23.8
Ciclev10028601m.g Citrus clementina HOM05D003468 ORTHO05D002806 1.1e-17 95.5 228 34.2
FAN16G1667 Fragaria x ananassa HOM05D003468 ORTHO05D002806 1.1e-17 95.5 602 23.1
Ah.04g159140 Amaranthus hybridus HOM05D003468 ORTHO05D002806 1.9e-17 94.7 655 22.6
RcHm_v2.0_Chr5g0000441 Rosa chinensis HOM05D003468 ORTHO05D002806 2.5e-17 94.4 648 22.1
BraA10t43633Z Brassica rapa HOM05D009360 ORTHO05D002806 3.3e-17 94.0 447 26.0
ECA247G2629 Erigeron canadensis HOM05D003468 ORTHO05D002806 4.3e-17 93.6 498 25.1
BcaC04g19876 Brassica carinata HOM05D009360 ORTHO05D002806 5.7e-17 93.2 450 24.4
PGR129G0007 Punica granatum HOM05D003468 ORTHO05D002806 5.7e-17 93.2 560 26.4
Lalb_Chr15g0085871 Lupinus albus HOM05D003468 ORTHO05D002806 7.4e-17 92.8 176 31.2
Sp6g20000 Schrenkiella parvula HOM05D009360 ORTHO05D002806 9.7e-17 92.4 450 23.8
MD03G1052200 Malus domestica HOM05D003468 ORTHO05D002806 1.6e-16 91.7 259 32.8
CiPaw.14G050900 Carya illinoinensis HOM05D003468 ORTHO05D002806 2.2e-16 91.3 684 22.5
Lj1A121T44 Lonicera japonica HOM05D003468 ORTHO05D002806 2.8e-16 90.9 420 25.5
Oeu064681.2 Olea europaea HOM05D003468 ORTHO05D002806 2.8e-16 90.9 477 25.8
BolC9t57878H Brassica oleracea HOM05D009360 ORTHO05D002806 3.7e-16 90.5 450 24.0
Glyma.08G047600 Glycine max HOM05D003468 ORTHO05D002806 3.7e-16 90.5 126 44.4
Sc16g0010510 Simmondsia chinensis HOM05D003468 ORTHO05D002806 6.3e-16 89.7 174 31.6
MD11G1054300 Malus domestica HOM05D003468 ORTHO05D002806 8.2e-16 89.4 261 32.6
Thhalv10013531m.g Eutrema salsugineum HOM05D009360 ORTHO05D002806 1.8e-15 88.2 463 23.5
Gohir.D10G008000 Gossypium hirsutum HOM05D003468 ORTHO05D002806 1.8e-15 88.2 146 39.0
Nitab4.5_0002091g0050 Nicotiana tabacum HOM05D003468 ORTHO05D002806 1.8e-15 88.2 450 24.9
Gorai.011G008700 Gossypium raimondii HOM05D003468 ORTHO05D002806 4.1e-15 87.0 146 38.4
CiPaw.13G064100 Carya illinoinensis HOM05D003468 ORTHO05D002806 6.9e-15 86.3 108 45.4
MBI16_g27567_MAGBIO Magnolia biondii HOM05D003468 ORTHO05D002806 9.0e-15 85.9 501 26.9
FAN08G2580 Fragaria x ananassa HOM05D003468 ORTHO05D002806 1.2e-14 85.5 581 23.9
Gohir.A10G008200 Gossypium hirsutum HOM05D003468 ORTHO05D002806 1.2e-14 85.5 146 40.4
CARHR016220 Cardamine hirsuta HOM05D009360 ORTHO05D002806 1.5e-14 85.1 434 24.2
FAN18G3325 Fragaria x ananassa HOM05D003468 ORTHO05D002806 4.5e-14 83.6 584 23.8
Carub.0008s1888 Capsella rubella HOM05D009360 ORTHO05D002806 5.9e-14 83.2 448 26.6
AT5G58340 Arabidopsis thaliana HOM05D009360 ORTHO05D002806 1.3e-13 82.0 451 24.8
HPP92_019205 Vanilla planifolia HOM05D003468 ORTHO05D002806 1.3e-13 82.0 462 25.3
Ah.06g195340 Amaranthus hybridus HOM05D003468 ORTHO05D002806 1.7e-13 81.6 651 21.0
Carub.0001s1549 Capsella rubella HOM05D009360 ORTHO05D002806 1.7e-13 81.6 438 24.9
Aqoxy6G01245 Aquilegia oxysepala HOM05D003468 ORTHO05D002806 2.9e-13 80.9 206 35.9
arahy.Tifrunner.gnm1.ann1.C9TTE9 Arachis hypogaea HOM05D003468 ORTHO05D002806 2.9e-13 80.9 362 26.8
arahy.Tifrunner.gnm1.ann1.ZR769L Arachis hypogaea HOM05D003468 ORTHO05D002806 2.9e-13 80.9 362 26.8
DCAR_024874 Daucus carota HOM05D003468 ORTHO05D002806 6.5e-13 79.7 198 33.3
SHI19247 Sapria himalayana HOM05D003468 ORTHO05D002806 1.4e-12 78.6 419 25.5
Zm00001eb271970 Zea mays HOM05D024462 ORTHO05D002806 1.4e-12 78.6 108 43.5
EL10Ac1g01349 Beta vulgaris HOM05D003468 ORTHO05D002806 2.5e-12 77.8 173 30.1
AL8G34440 Arabidopsis lyrata HOM05D009360 ORTHO05D002806 3.2e-12 77.4 449 25.2
Sc16g0010520 Simmondsia chinensis HOM05D003468 ORTHO05D002806 3.2e-12 77.4 108 47.2
VMungo1309G0821 Vigna mungo HOM05D003468 ORTHO05D002806 3.2e-12 77.4 195 31.8
Migut.M01993 Erythranthe guttata HOM05D003468 ORTHO05D002806 5.5e-12 76.6 507 23.7
FvH4_5g27240 Fragaria vesca HOM05D003468 ORTHO05D002806 7.2e-12 76.3 150 34.0
DCAR_005491 Daucus carota HOM05D003468 ORTHO05D002806 9.4e-12 75.9 102 46.1
FvH4_5g00450 Fragaria vesca HOM05D003468 ORTHO05D002806 9.4e-12 75.9 203 32.5
THA.LOC104810722 Tarenaya hassleriana HOM05D009360 ORTHO05D002806 9.4e-12 75.9 456 22.8
PSO675G8835 Papaver somniferum HOM05D003468 ORTHO05D002806 1.6e-11 75.1 484 23.8
C09p50220 Brassica napus HOM05D000295 ORTHO05D000188 2.1e-11 74.7 420 24.5
BolC5t34879H Brassica oleracea HOM05D009360 ORTHO05D002806 2.7e-11 74.3 444 23.6
PSO541G3532 Papaver somniferum HOM05D003468 ORTHO05D002806 2.7e-11 74.3 484 23.8
A10p15910 Brassica napus HOM05D000295 ORTHO05D000188 3.6e-11 73.9 422 24.6
C05p62230 Brassica napus HOM05D009360 ORTHO05D002806 3.6e-11 73.9 444 23.6
BraA05t22997Z Brassica rapa HOM05D009360 ORTHO05D002806 3.6e-11 73.9 443 24.2
HPP92_009505 Vanilla planifolia HOM05D003468 ORTHO05D002806 1.0e-10 72.4 490 26.5
Zm00001eb374860 Zea mays HOM05D024462 ORTHO05D002806 1.4e-10 72.0 111 44.1
Aqoxy4G02393 Aquilegia oxysepala HOM05D003468 ORTHO05D002806 1.8e-10 71.6 220 29.1
RcHm_v2.0_Chr7g0218431 Rosa chinensis HOM05D003468 ORTHO05D002806 2.3e-10 71.2 168 33.3
A05p42550 Brassica napus HOM05D009360 ORTHO05D002806 3.9e-10 70.5 443 23.7
FAN18G2440 Fragaria x ananassa HOM05D003468 ORTHO05D002806 3.9e-10 70.5 177 31.6
AT1G15720 Arabidopsis thaliana HOM05D009360 ORTHO05D002806 6.7e-10 69.7 440 20.7
Sabra13G0124400 Salix brachista HOM05D003468 ORTHO05D002806 6.7e-10 69.7 599 22.9
COL.COLO4_13781 Corchorus olitorius HOM05D003468 ORTHO05D002806 1.5e-09 68.6 222 29.7
SMO367G1195 Selaginella moellendorffii HOM05D003468 ORTHO05D002806 1.5e-09 68.6 112 40.2
AL1G27830 Arabidopsis lyrata HOM05D009360 ORTHO05D002806 2.0e-09 68.2 152 28.9
Gohir.A09G085500 Gossypium hirsutum HOM05D003468 ORTHO05D002806 2.0e-09 68.2 148 31.8
TWI79G0734 Tripterygium wilfordii HOM05D003468 ORTHO05D002806 2.0e-09 68.2 226 30.5
FAN13G0004 Fragaria x ananassa HOM05D003468 ORTHO05D002806 3.3e-09 67.4 215 28.8
unitig_0.g430 Utricularia gibba HOM05D003468 ORTHO05D002806 7.4e-09 66.2 503 23.7
FAN08G2609 Fragaria x ananassa HOM05D003468 ORTHO05D002806 2.8e-08 64.3 97 44.3
Gohir.D09G085500 Gossypium hirsutum HOM05D003468 ORTHO05D002806 2.8e-08 64.3 148 30.4
Cpa.g.sc85.113 Carica papaya HOM05D003468 ORTHO05D002806 4.8e-08 63.5 180 27.8
AL1G16930 Arabidopsis lyrata HOM05D011930 ORTHO05D002806 6.3e-08 63.2 421 24.0
Gorai.006G101500 Gossypium raimondii HOM05D003468 ORTHO05D002806 6.3e-08 63.2 106 34.0
Aa31LG1G7980 Aethionema arabicum HOM05D011930 ORTHO05D002806 8.2e-08 62.8 138 32.6
AT1G06910 Arabidopsis thaliana HOM05D011930 ORTHO05D002806 2.4e-07 61.2 421 23.5
HPP92_005948 Vanilla planifolia HOM05D003468 ORTHO05D002806 3.1e-07 60.8 127 35.4
BraA09t42009Z Brassica rapa HOM05D011930 ORTHO05D002806 5.3e-07 60.1 421 24.5
A09p66700 Brassica napus HOM05D011930 ORTHO05D002806 6.9e-07 59.7 421 24.5
FAN13G3328 Fragaria x ananassa HOM05D003468 ORTHO05D002806 6.9e-07 59.7 262 28.6
Thecc.01G157300 Theobroma cacao HOM05D003468 ORTHO05D002806 6.9e-07 59.7 180 26.1
CARHR006580 Cardamine hirsuta HOM05D011930 ORTHO05D002806 1.2e-06 58.9 421 23.5
Thhalv10022421m.g Eutrema salsugineum HOM05D009360 ORTHO05D002806 1.5e-06 58.5 442 22.2
Thecc.01G027400 Theobroma cacao HOM05D003468 ORTHO05D002806 1.5e-06 58.5 180 25.6
RcHm_v2.0_Chr7g0221541 Rosa chinensis HOM05D003468 ORTHO05D002806 2.6e-06 57.8 180 31.1
Glyma.04G004700 Glycine max HOM05D002477 ORTHO05D001927 3.4e-06 57.4 74 43.2
BcaC05g29987 Brassica carinata HOM05D009360 ORTHO05D002806 4.5e-06 57.0 122 33.6
BcaC07g42039 Brassica carinata HOM05D011930 ORTHO05D002806 4.5e-06 57.0 421 23.3
C08p50930 Brassica napus HOM05D011930 ORTHO05D002806 4.5e-06 57.0 421 23.3
BolC8t52621H Brassica oleracea HOM05D011930 ORTHO05D002806 4.5e-06 57.0 421 23.3
BcaC07g42548 Brassica carinata HOM05D011930 ORTHO05D002806 5.9e-06 56.6 417 23.7


User provided reference genes

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