Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G5919 Trifolium pratense HOM05D006027 ORTHO05D007604 9.4e-104 380.2 190 100.0
Medtr1g069465 Medicago truncatula HOM05D006027 ORTHO05D007604 4.0e-94 348.2 183 94.0
Psat6g062520 Pisum sativum HOM05D006027 ORTHO05D007604 5.9e-90 334.3 184 92.4
Ca_09646_v3 Cicer arietinum L. HOM05D006027 ORTHO05D007604 1.1e-88 330.1 183 92.3
Glyma.13G127200 Glycine max HOM05D006027 ORTHO05D007604 1.1e-78 297.0 187 82.4
Phvul.007G153500 Phaseolus vulgaris HOM05D006027 ORTHO05D007604 8.9e-78 293.9 181 84.5
Glyma.10G040600 Glycine max HOM05D006027 ORTHO05D007604 3.4e-77 292.0 181 82.3
VMungo0720G1620 Vigna mungo HOM05D006027 ORTHO05D007604 7.1e-75 284.3 181 81.8
Lj5g0017558 Lotus japonicus HOM05D006027 ORTHO05D007604 9.2e-75 283.9 187 77.0
Lalb_Chr02g0152741 Lupinus albus HOM05D006027 ORTHO05D007604 2.8e-71 272.3 188 77.1
Lalb_Chr06g0170731 Lupinus albus HOM05D006027 ORTHO05D007604 7.6e-69 264.2 181 76.8
arahy.Tifrunner.gnm1.ann1.72UZ71 Arachis hypogaea HOM05D006027 ORTHO05D007604 4.9e-68 261.5 180 73.9
arahy.Tifrunner.gnm1.ann1.FRV526 Arachis hypogaea HOM05D006027 ORTHO05D007604 4.9e-68 261.5 180 73.9
Phvul.001G165200 Phaseolus vulgaris HOM05D006027 ORTHO05D007604 4.6e-66 255.0 179 72.6
QL09p041558 Quercus lobata HOM05D006027 ORTHO05D007604 1.3e-65 253.4 181 73.5
Atru.chr5.1865 Acer truncatum HOM05D006027 ORTHO05D007604 3.9e-65 251.9 182 72.0
Gohir.A07G152700 Gossypium hirsutum HOM05D006027 ORTHO05D007604 3.9e-65 251.9 183 73.8
Gohir.D07G158900 Gossypium hirsutum HOM05D006027 ORTHO05D007604 1.1e-64 250.4 183 73.8
VMungo1383G1953 Vigna mungo HOM05D006027 ORTHO05D007604 1.1e-64 250.4 179 70.4
Gorai.001G182100 Gossypium raimondii HOM05D006027 ORTHO05D007604 3.3e-64 248.8 183 73.2
CANSAT01G0515 Cannabis sativa HOM05D006027 ORTHO05D007604 2.1e-63 246.1 182 73.1
CAN.G536.12 Capsicum annuum HOM05D006027 ORTHO05D007604 2.8e-63 245.7 180 71.1
Haze_24710 Corylus avellana HOM05D006027 ORTHO05D007604 6.2e-63 244.6 185 71.9
Thecc.01G249800 Theobroma cacao HOM05D006027 ORTHO05D007604 6.2e-63 244.6 183 72.7
Sopen09g025650 Solanum pennellii HOM05D006027 ORTHO05D007604 8.1e-63 244.2 182 72.5
Manes.12G038000 Manihot esculenta HOM05D006027 ORTHO05D007604 1.1e-62 243.8 191 69.6
Prupe.8G215000 Prunus persica HOM05D006027 ORTHO05D007604 1.1e-62 243.8 182 71.4
Duzib138G0534 Durio zibethinus HOM05D006027 ORTHO05D007604 1.4e-62 243.4 183 72.7
Duzib211G0648 Durio zibethinus HOM05D006027 ORTHO05D007604 1.4e-62 243.4 183 71.6
CANSAT01G2333 Cannabis sativa HOM05D006027 ORTHO05D007604 1.8e-62 243.0 182 73.1
Solyc09g064500.3 Solanum lycopersicum HOM05D006027 ORTHO05D007604 2.4e-62 242.7 182 72.0
PGSC0003DMG400008585 Solanum tuberosum HOM05D006027 ORTHO05D007604 2.4e-62 242.7 182 72.0
Nitab4.5_0002435g0010 Nicotiana tabacum HOM05D006027 ORTHO05D007604 6.8e-62 241.1 182 70.9
Eucgr.K01424 Eucalyptus grandis HOM05D006027 ORTHO05D007604 8.9e-62 240.7 183 69.4
Nitab4.5_0000845g0140 Nicotiana tabacum HOM05D006027 ORTHO05D007604 8.9e-62 240.7 182 70.9
DCAR_000568 Daucus carota HOM05D006027 ORTHO05D007604 1.2e-61 240.4 184 67.9
SGA_v2.0_scaffold1G00660 Striga asiatica HOM05D006027 ORTHO05D007604 2.6e-61 239.2 185 67.0
MD05G1188500 Malus domestica HOM05D006027 ORTHO05D007604 5.8e-61 238.0 180 70.0
Migut.D00479 Erythranthe guttata HOM05D006027 ORTHO05D007604 9.9e-61 237.3 181 68.0
Potri.002G256400 Populus trichocarpa HOM05D006027 ORTHO05D007604 1.7e-60 236.5 181 68.5
Dinv43066 Davidia involucrata HOM05D006027 ORTHO05D007604 2.2e-60 236.1 183 67.2
Sabra02G0194900 Salix brachista HOM05D006027 ORTHO05D007604 2.9e-60 235.7 181 68.0
Cc01_g17770 Coffea canephora HOM05D006027 ORTHO05D007604 4.9e-60 235.0 181 68.5
MD10G1176000 Malus domestica HOM05D006027 ORTHO05D007604 8.4e-60 234.2 180 68.9
Manes.13G039500 Manihot esculenta HOM05D006027 ORTHO05D007604 1.4e-59 233.4 183 68.3
PGR044G2038 Punica granatum HOM05D006027 ORTHO05D007604 1.4e-59 233.4 185 68.6
TAR633G0397 Trochodendron aralioides HOM05D006027 ORTHO05D007604 2.4e-59 232.6 182 68.7
GSVIVG01028434001 Vitis vinifera HOM05D006027 ORTHO05D007604 2.4e-59 232.6 181 67.4
Cfa002488 Carpinus fangiana HOM05D006027 ORTHO05D007604 9.3e-59 230.7 167 74.3
FAN15G2830 Fragaria x ananassa HOM05D006027 ORTHO05D007604 9.3e-59 230.7 183 69.9
Oeu052083.1 Olea europaea HOM05D006027 ORTHO05D007604 1.2e-58 230.3 146 78.8
Aqoxy5G00130 Aquilegia oxysepala HOM05D006027 ORTHO05D007604 2.7e-58 229.2 187 66.8
HanXRQChr01g0014971 Helianthus annuus HOM05D006027 ORTHO05D007604 3.5e-58 228.8 183 66.7
FAN27G2528 Fragaria x ananassa HOM05D006027 ORTHO05D007604 4.6e-58 228.4 183 68.9
Lsat_1_v5_gn_5_181161 Lactuca sativa HOM05D006027 ORTHO05D007604 1.0e-57 227.3 182 63.7
FvH4_2g20470 Fragaria vesca HOM05D006027 ORTHO05D007604 1.3e-57 226.9 183 68.3
FAN24G3422 Fragaria x ananassa HOM05D006027 ORTHO05D007604 1.3e-57 226.9 183 68.3
vmacro14793 Vaccinium macrocarpon HOM05D006027 ORTHO05D007604 1.7e-57 226.5 184 68.5
TWI18G0031 Tripterygium wilfordii HOM05D006027 ORTHO05D007604 2.3e-57 226.1 180 63.3
Lj1C74G4 Lonicera japonica HOM05D006027 ORTHO05D007604 3.0e-57 225.7 145 79.3
MELO3C022393.2 Cucumis melo HOM05D006027 ORTHO05D007604 3.9e-57 225.3 189 66.7
Oeu015437.1 Olea europaea HOM05D006027 ORTHO05D007604 3.9e-57 225.3 147 76.9
AUR62025437 Chenopodium quinoa HOM05D006027 ORTHO05D007604 5.1e-57 224.9 190 65.8
Actinidia23700 Actinidia chinensis HOM05D006027 ORTHO05D007604 8.7e-57 224.2 182 67.0
EL10Ac7g17691 Beta vulgaris HOM05D006027 ORTHO05D007604 1.5e-56 223.4 148 74.3
Os01g0938100 Oryza sativa ssp. japonica HOM05D006027 ORTHO05D007604 1.9e-56 223.0 179 64.8
Nn3g19801 Nelumbo nucifera HOM05D006027 ORTHO05D007604 2.5e-56 222.6 181 65.7
PSO764G0320 Papaver somniferum HOM05D006027 ORTHO05D007604 9.6e-56 220.7 186 65.1
TAR362G0914 Trochodendron aralioides HOM05D006027 ORTHO05D007604 9.6e-56 220.7 184 65.2
CSS0012566 Camellia sinensis var. sinensis HOM05D006027 ORTHO05D007604 2.1e-55 219.5 181 64.6
COL.COLO4_10205 Corchorus olitorius HOM05D006027 ORTHO05D007604 2.1e-55 219.5 114 91.2
PSO832G0858 Papaver somniferum HOM05D006027 ORTHO05D007604 2.8e-55 219.2 185 64.9
Actinidia09513 Actinidia chinensis HOM05D006027 ORTHO05D007604 3.6e-55 218.8 182 66.5
CSS0010160 Camellia sinensis var. sinensis HOM05D006027 ORTHO05D007604 6.2e-55 218.0 181 64.1
ClCG06G001400 Citrullus lanatus HOM05D006027 ORTHO05D007604 6.2e-55 218.0 189 61.9
Peaxi162Scf00043g00255 Petunia axillaris HOM05D006027 ORTHO05D007604 6.2e-55 218.0 114 90.4
Rhsim01G0260300 Rhododendron simsii HOM05D006027 ORTHO05D007604 8.1e-55 217.6 144 75.0
C01p10860 Brassica napus HOM05D006027 ORTHO05D007604 1.4e-54 216.9 144 69.4
Sp7g26630 Schrenkiella parvula HOM05D006027 ORTHO05D007604 3.1e-54 215.7 165 64.2
Sed0007731 Sechium edule HOM05D006027 ORTHO05D007604 3.1e-54 215.7 159 67.3
AUR62008802 Chenopodium quinoa HOM05D006027 ORTHO05D007604 4.0e-54 215.3 116 87.9
A03p58340 Brassica napus HOM05D006027 ORTHO05D007604 5.3e-54 214.9 185 61.1
Ciclev10022322m.g Citrus clementina HOM05D006027 ORTHO05D007604 5.3e-54 214.9 174 66.7
BcaC06g32609 Brassica carinata HOM05D006027 ORTHO05D007604 6.9e-54 214.5 144 70.8
BraA01t00872Z Brassica rapa HOM05D006027 ORTHO05D007604 1.2e-53 213.8 144 68.8
Zm00001eb141870 Zea mays HOM05D006027 ORTHO05D007604 2.0e-53 213.0 182 62.6
MBI07_g08912_MAGBIO Magnolia biondii HOM05D006027 ORTHO05D007604 2.6e-53 212.6 181 60.2
BcaNung04696 Brassica carinata HOM05D006027 ORTHO05D007604 3.4e-53 212.2 144 68.1
CARHR236440 Cardamine hirsuta HOM05D006027 ORTHO05D007604 4.4e-53 211.8 144 68.8
BolC7t46115H Brassica oleracea HOM05D006027 ORTHO05D007604 7.6e-53 211.1 169 64.5
Hund18287 Selenicereus undatus HOM05D006027 ORTHO05D007604 7.6e-53 211.1 185 61.1
CDE02G4364 Ceratophyllum demersum HOM05D006027 ORTHO05D007604 9.9e-53 210.7 146 73.3
ECA248G3782 Erigeron canadensis HOM05D006027 ORTHO05D007604 1.3e-52 210.3 145 71.0
C07p56360 Brassica napus HOM05D006027 ORTHO05D007604 1.7e-52 209.9 169 63.9
Aa31LG2G21720 Aethionema arabicum HOM05D006027 ORTHO05D007604 3.8e-52 208.8 166 63.3
A01p09280 Brassica napus HOM05D006027 ORTHO05D007604 4.9e-52 208.4 144 66.7
Carub.0007s1200 Capsella rubella HOM05D006027 ORTHO05D007604 8.4e-52 207.6 184 57.6
AT4G28660 Arabidopsis thaliana HOM05D006027 ORTHO05D007604 1.1e-51 207.2 145 67.6
Thhalv10026347m.g Eutrema salsugineum HOM05D006027 ORTHO05D007604 3.2e-51 205.7 172 59.9
unitig_8.g3074 Utricularia gibba HOM05D006027 ORTHO05D007604 3.2e-51 205.7 192 58.9
Zm00001eb141830 Zea mays HOM05D006027 ORTHO05D007604 3.2e-51 205.7 170 61.8
Cpa.g.sc87.33 Carica papaya HOM05D006027 ORTHO05D007604 5.4e-51 204.9 111 84.7
HPP92_027289 Vanilla planifolia HOM05D006027 ORTHO05D007604 9.3e-51 204.1 144 69.4
SalBow4G0311 Salvia bowleyana HOM05D006027 ORTHO05D007604 1.6e-50 203.4 114 84.2
Sc05g0002880 Simmondsia chinensis HOM05D006027 ORTHO05D007604 2.7e-50 202.6 181 62.4
THA.LOC104820068 Tarenaya hassleriana HOM05D006027 ORTHO05D007604 3.5e-50 202.2 182 59.9
HPP92_008468 Vanilla planifolia HOM05D006027 ORTHO05D007604 4.6e-50 201.8 183 62.3
BolC1t01050H Brassica oleracea HOM05D000022 ORTHO05D000744 6.0e-50 201.4 138 68.1
AL7G23880 Arabidopsis lyrata HOM05D006027 ORTHO05D007604 1.0e-49 200.7 165 61.2
THA.LOC104814531 Tarenaya hassleriana HOM05D006027 ORTHO05D007604 3.9e-49 198.7 181 58.0
ATR0787G157 Amborella trichopoda HOM05D006027 ORTHO05D007604 6.2e-47 191.4 111 80.2
Mapoly0042s0085 Marchantia polymorpha HOM05D006027 ORTHO05D007604 1.9e-43 179.9 118 69.5
CiPaw.03G271300 Carya illinoinensis HOM05D006027 ORTHO05D007604 5.5e-43 178.3 182 58.8
Pp3c7_5450 Physcomitrium patens HOM05D006027 ORTHO05D007604 1.1e-40 170.6 117 66.7
SMO347G0509 Selaginella moellendorffii HOM05D006027 ORTHO05D007604 4.3e-40 168.7 111 70.3
AagrBONN_evm.TU.Sc2ySwM_340.224 Anthoceros agrestis HOM05D006027 ORTHO05D007604 1.6e-39 166.8 108 69.4
Pp3c11_18280 Physcomitrium patens HOM05D006027 ORTHO05D007604 5.3e-38 161.8 117 62.4
Ah.15g092630 Amaranthus hybridus HOM05D006027 ORTHO05D007604 6.5e-36 154.8 111 69.4
CBR_g12742 Chara braunii HOM05D006027 ORTHO05D007604 1.2e-34 150.6 108 60.2
MCO16G336 Micromonas commoda HOM05D006027 ORTHO05D007604 1.2e-34 150.6 112 58.9
PRCOL_00005949 Prasinoderma coloniale HOM05D006027 ORTHO05D007604 3.9e-33 145.6 106 59.4
Cre10.g440450 Chlamydomonas reinhardtii HOM05D006027 ORTHO05D007604 1.5e-32 143.7 108 58.3
Zm00001eb141750 Zea mays HOM05D006027 ORTHO05D007604 6.3e-23 111.7 57 87.7
Zm00001eb141790 Zea mays HOM05D006027 ORTHO05D007604 6.3e-23 111.7 57 87.7
CSS0017427 Camellia sinensis var. sinensis HOM05D006027 ORTHO05D007604 1.4e-19 100.5 173 40.5
TAR362G0025 Trochodendron aralioides HOM05D006027 ORTHO05D007604 9.7e-16 87.8 58 74.1
RcHm_v2.0_Chr6g0286561 Rosa chinensis HOM05D006027 ORTHO05D007604 1.7e-15 87.0 106 54.7
Zm00001eb141760 Zea mays HOM05D006027 ORTHO05D007604 9.1e-14 81.3 50 76.0
CDE09G0356 Ceratophyllum demersum HOM05D006027 ORTHO05D007604 2.7e-10 69.7 114 43.9


User provided reference genes

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