Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G5912 Trifolium pratense HOM05D005910 ORTHO05D007088 7.5e-101 370.5 190 100.0
Medtr7g085050 Medicago truncatula HOM05D005910 ORTHO05D007088 2.8e-100 368.6 190 99.5
Ca_08246_v3 Cicer arietinum L. HOM05D005910 ORTHO05D007088 8.3e-100 367.1 190 98.9
Lj1g0011929 Lotus japonicus HOM05D005910 ORTHO05D007088 1.8e-99 365.9 190 98.9
VMungo1383G3424 Vigna mungo HOM05D005910 ORTHO05D007088 1.8e-99 365.9 190 98.4
Phvul.001G097100 Phaseolus vulgaris HOM05D005910 ORTHO05D007088 2.4e-99 365.5 190 97.9
Glyma.19G108300 Glycine max HOM05D005910 ORTHO05D007088 5.4e-99 364.4 190 97.9
Psat3g091080 Pisum sativum HOM05D005910 ORTHO05D007088 5.4e-99 364.4 190 97.9
Glyma.16G043900 Glycine max HOM05D005910 ORTHO05D007088 1.2e-98 363.2 192 97.9
Lalb_Chr22g0359441 Lupinus albus HOM05D005910 ORTHO05D007088 5.9e-98 360.9 190 96.8
Lalb_Chr14g0364291 Lupinus albus HOM05D005910 ORTHO05D007088 1.3e-97 359.8 190 96.8
ClCG10G017690 Citrullus lanatus HOM05D005910 ORTHO05D007088 2.0e-90 335.9 186 91.4
MELO3C009607.2 Cucumis melo HOM05D005910 ORTHO05D007088 5.9e-90 334.3 186 90.3
CANSAT64G0849 Cannabis sativa HOM05D005910 ORTHO05D007088 8.6e-89 330.5 193 90.2
FAN02G0902 Fragaria x ananassa HOM05D005910 ORTHO05D007088 2.8e-87 325.5 193 88.6
Prupe.7G082200 Prunus persica HOM05D005910 ORTHO05D007088 3.1e-86 322.0 185 90.8
FAN05G0623 Fragaria x ananassa HOM05D005910 ORTHO05D007088 6.8e-86 320.9 193 87.6
FAN14G5103 Fragaria x ananassa HOM05D005910 ORTHO05D007088 6.8e-86 320.9 193 87.6
RcHm_v2.0_Chr3g0479191 Rosa chinensis HOM05D005910 ORTHO05D007088 6.8e-86 320.9 192 87.5
Manes.09G037701 Manihot esculenta HOM05D005910 ORTHO05D007088 1.2e-85 320.1 193 86.5
FvH4_6g21840 Fragaria vesca HOM05D005910 ORTHO05D007088 1.5e-85 319.7 193 87.0
MD12G1054500 Malus domestica HOM05D005910 ORTHO05D007088 7.5e-85 317.4 187 88.8
CiPaw.09G028200 Carya illinoinensis HOM05D005910 ORTHO05D007088 1.3e-84 316.6 192 85.9
Sed0016712 Sechium edule HOM05D005910 ORTHO05D007088 1.3e-84 316.6 189 87.3
PGR142G2565 Punica granatum HOM05D005910 ORTHO05D007088 2.2e-84 315.8 185 88.6
QL07p024560 Quercus lobata HOM05D005910 ORTHO05D007088 2.2e-84 315.8 197 83.8
CiPaw.10G025100 Carya illinoinensis HOM05D005910 ORTHO05D007088 1.1e-83 313.5 192 85.4
TWI77G0716 Tripterygium wilfordii HOM05D005910 ORTHO05D007088 1.4e-83 313.2 193 85.0
Thecc.05G175100 Theobroma cacao HOM05D005910 ORTHO05D007088 3.2e-83 312.0 195 85.1
Hma1.2p1_0124F.1_g058350 Hydrangea macrophylla HOM05D005910 ORTHO05D007088 4.1e-83 311.6 194 87.1
CsaV3_3G038630 Cucumis sativus L. HOM05D005910 ORTHO05D007088 9.2e-83 310.5 174 90.2
Duzib106G1486 Durio zibethinus HOM05D005910 ORTHO05D007088 1.2e-82 310.1 195 85.6
Gohir.D09G124900 Gossypium hirsutum HOM05D005910 ORTHO05D007088 1.2e-82 310.1 195 84.6
Gorai.006G143800 Gossypium raimondii HOM05D005910 ORTHO05D007088 1.2e-82 310.1 195 84.6
Atru.chr8.1156 Acer truncatum HOM05D005910 ORTHO05D007088 1.6e-82 309.7 188 86.7
Cpa.g.sc85.46 Carica papaya HOM05D005910 ORTHO05D007088 1.6e-82 309.7 189 85.7
Dinv16345 Davidia involucrata HOM05D005910 ORTHO05D007088 1.6e-82 309.7 189 86.8
Gohir.A09G128900 Gossypium hirsutum HOM05D005910 ORTHO05D007088 4.6e-82 308.1 195 84.1
BcaC09g48209 Brassica carinata HOM05D005910 ORTHO05D007088 6.0e-82 307.8 189 84.7
CSS0007798 Camellia sinensis var. sinensis HOM05D005910 ORTHO05D007088 7.8e-82 307.4 188 86.2
COL.COLO4_29362 Corchorus olitorius HOM05D005910 ORTHO05D007088 7.8e-82 307.4 195 83.6
Thhalv10022159m.g Eutrema salsugineum HOM05D005910 ORTHO05D007088 1.0e-81 307.0 189 84.7
Actinidia17287 Actinidia chinensis HOM05D005910 ORTHO05D007088 1.3e-81 306.6 187 86.1
BcaB04g21099 Brassica carinata HOM05D005910 ORTHO05D007088 2.3e-81 305.8 191 83.2
BolC1t05270H Brassica oleracea HOM05D005910 ORTHO05D007088 2.3e-81 305.8 189 83.6
Thhalv10016091m.g Eutrema salsugineum HOM05D005910 ORTHO05D007088 3.0e-81 305.4 190 84.2
CARHR206550 Cardamine hirsuta HOM05D005910 ORTHO05D007088 3.9e-81 305.1 190 84.2
CARHR086590 Cardamine hirsuta HOM05D005910 ORTHO05D007088 8.6e-81 303.9 190 83.7
Sp3g10260 Schrenkiella parvula HOM05D005910 ORTHO05D007088 8.6e-81 303.9 189 84.1
AT3G12030 Arabidopsis thaliana HOM05D005910 ORTHO05D007088 1.5e-80 303.1 190 83.2
BraA01t04144Z Brassica rapa HOM05D005910 ORTHO05D007088 1.9e-80 302.8 189 83.1
DCAR_019862 Daucus carota HOM05D005910 ORTHO05D007088 1.9e-80 302.8 189 85.2
Lsat_1_v5_gn_2_56160 Lactuca sativa HOM05D005910 ORTHO05D007088 1.9e-80 302.8 188 85.6
AL6G16750 Arabidopsis lyrata HOM05D005910 ORTHO05D007088 2.5e-80 302.4 190 83.7
Carub.0003s1137 Capsella rubella HOM05D005910 ORTHO05D007088 3.3e-80 302.0 190 83.2
Actinidia38597 Actinidia chinensis HOM05D005910 ORTHO05D007088 5.6e-80 301.2 187 85.0
THA.LOC104799285 Tarenaya hassleriana HOM05D005910 ORTHO05D007088 5.6e-80 301.2 190 83.2
AL3G23640 Arabidopsis lyrata HOM05D005910 ORTHO05D007088 7.3e-80 300.8 190 82.6
Carub.0006s0554 Capsella rubella HOM05D005910 ORTHO05D007088 7.3e-80 300.8 190 82.1
AT5G06660 Arabidopsis thaliana HOM05D005910 ORTHO05D007088 9.5e-80 300.4 190 83.2
Aa31LG3G5420 Aethionema arabicum HOM05D005910 ORTHO05D007088 1.2e-79 300.1 190 82.6
Haze_20022 Corylus avellana HOM05D005910 ORTHO05D007088 1.2e-79 300.1 193 82.9
Haze_20025 Corylus avellana HOM05D005910 ORTHO05D007088 1.2e-79 300.1 193 82.9
Sp6g36210 Schrenkiella parvula HOM05D005910 ORTHO05D007088 1.2e-79 300.1 190 82.6
Manes.08G042400 Manihot esculenta HOM05D005910 ORTHO05D007088 2.8e-79 298.9 193 82.4
Sed0026900 Sechium edule HOM05D005910 ORTHO05D007088 6.8e-78 294.3 186 80.6
GSVIVG01033465001 Vitis vinifera HOM05D005910 ORTHO05D007088 6.8e-78 294.3 187 83.4
Oeu057587.1 Olea europaea HOM05D005910 ORTHO05D007088 1.2e-77 293.5 189 83.1
PSO478G2464 Papaver somniferum HOM05D005910 ORTHO05D007088 1.2e-77 293.5 192 79.7
Rhsim04G0093900 Rhododendron simsii HOM05D005910 ORTHO05D007088 2.9e-76 288.9 192 81.8
Rhsim04G0095300 Rhododendron simsii HOM05D005910 ORTHO05D007088 2.9e-76 288.9 192 81.8
MSTRG.19925 Avicennia marina HOM05D005910 ORTHO05D007088 3.7e-76 288.5 189 82.0
Solyc10g079000.1 Solanum lycopersicum HOM05D005910 ORTHO05D007088 4.9e-76 288.1 189 82.0
Sopen10g029620 Solanum pennellii HOM05D005910 ORTHO05D007088 4.9e-76 288.1 189 82.0
PGSC0003DMG400011451 Solanum tuberosum HOM05D005910 ORTHO05D007088 4.9e-76 288.1 189 82.0
Cfa020141 Carpinus fangiana HOM05D005910 ORTHO05D007088 6.4e-76 287.7 193 79.8
Cc06_g15530 Coffea canephora HOM05D005910 ORTHO05D007088 1.4e-75 286.6 188 81.4
Peaxi162Scf00463g00044 Petunia axillaris HOM05D005910 ORTHO05D007088 2.4e-75 285.8 186 80.6
CAN.G960.19 Capsicum annuum HOM05D005910 ORTHO05D007088 5.4e-75 284.6 190 80.5
Migut.J01866 Erythranthe guttata HOM05D005910 ORTHO05D007088 5.4e-75 284.6 191 79.6
TAR369G0766 Trochodendron aralioides HOM05D005910 ORTHO05D007088 5.4e-75 284.6 191 81.2
TAR623G1561 Trochodendron aralioides HOM05D005910 ORTHO05D007088 7.1e-75 284.3 191 81.2
SGA_v2.0_scaffold69G23042 Striga asiatica HOM05D005910 ORTHO05D007088 9.2e-75 283.9 191 79.6
Nitab4.5_0009361g0020 Nicotiana tabacum HOM05D005910 ORTHO05D007088 3.5e-74 282.0 187 78.1
Nitab4.5_0000009g0230 Nicotiana tabacum HOM05D005910 ORTHO05D007088 1.3e-73 280.0 187 78.1
Potri.016G060300 Populus trichocarpa HOM05D005910 ORTHO05D007088 3.9e-73 278.5 187 78.6
unitig_26.g10040 Utricularia gibba HOM05D005910 ORTHO05D007088 1.9e-72 276.2 189 78.3
Aqoxy7G00427 Aquilegia oxysepala HOM05D005910 ORTHO05D007088 3.3e-72 275.4 186 79.0
AUR62012008 Chenopodium quinoa HOM05D005910 ORTHO05D007088 5.6e-72 274.6 186 78.0
SHI31753 Sapria himalayana HOM05D005910 ORTHO05D007088 5.6e-72 274.6 179 77.7
ECA238G3575 Erigeron canadensis HOM05D005910 ORTHO05D007088 2.1e-71 272.7 195 77.9
AUR62015329 Chenopodium quinoa HOM05D005910 ORTHO05D007088 4.7e-71 271.6 186 76.3
Sc13g0002410 Simmondsia chinensis HOM05D005910 ORTHO05D007088 4.0e-70 268.5 192 75.0
HPP92_021275 Vanilla planifolia HOM05D005910 ORTHO05D007088 8.9e-70 267.3 202 69.8
HanXRQChr14g0438251 Helianthus annuus HOM05D005910 ORTHO05D007088 1.2e-69 266.9 189 76.2
ATR0598G129 Amborella trichopoda HOM05D005910 ORTHO05D007088 1.7e-68 263.1 183 76.0
EL10Ac3g06882 Beta vulgaris HOM05D005910 ORTHO05D007088 8.4e-68 260.8 183 74.3
Lsat_1_v5_gn_6_36581 Lactuca sativa HOM05D005910 ORTHO05D007088 3.5e-66 255.4 179 75.4
vmacro22120 Vaccinium macrocarpon HOM05D005910 ORTHO05D007088 2.3e-65 252.7 174 78.7
HanXRQChr03g0075461 Helianthus annuus HOM05D005910 ORTHO05D007088 7.3e-64 247.7 187 71.7
AagrBONN_evm.TU.Sc2ySwM_117.1513 Anthoceros agrestis HOM05D005910 ORTHO05D007088 2.8e-63 245.7 190 68.9
Mapoly0107s0023 Marchantia polymorpha HOM05D005910 ORTHO05D007088 3.6e-63 245.4 184 70.1
Pp3c21_11350 Physcomitrium patens HOM05D005910 ORTHO05D007088 8.1e-63 244.2 183 70.5
Zm00001eb055560 Zea mays HOM05D005910 ORTHO05D007088 8.1e-63 244.2 200 65.0
Zm00001eb215980 Zea mays HOM05D005910 ORTHO05D007088 8.9e-62 240.7 202 62.9
Os03g0721400 Oryza sativa ssp. japonica HOM05D005910 ORTHO05D007088 1.1e-59 233.8 210 60.0
SMO367G0437 Selaginella moellendorffii HOM05D005910 ORTHO05D007088 4.2e-59 231.9 181 66.9
CBR_g49549 Chara braunii HOM05D005910 ORTHO05D007088 7.8e-58 227.6 183 61.2
Ciclev10013918m.g Citrus clementina HOM05D005910 ORTHO05D007088 7.8e-58 227.6 129 91.5
Dinv24042 Davidia involucrata HOM05D005910 ORTHO05D007088 2.8e-55 219.2 189 67.7
Sabra16G0063200 Salix brachista HOM05D005910 ORTHO05D007088 6.2e-55 218.0 135 84.4
Lj1P1133T16 Lonicera japonica HOM05D005910 ORTHO05D007088 1.8e-54 216.5 136 86.0
CSS0031188 Camellia sinensis var. sinensis HOM05D005910 ORTHO05D007088 5.3e-54 214.9 188 64.9
SEGI_08450 Sequoiadendron giganteum HOM05D005910 ORTHO05D007088 9.6e-48 194.1 167 65.9
CSS0042896 Camellia sinensis var. sinensis HOM05D005910 ORTHO05D007088 4.8e-47 191.8 189 61.4
Actinidia38594 Actinidia chinensis HOM05D005910 ORTHO05D007088 8.4e-44 181.0 120 83.3
MD14G1053500 Malus domestica HOM05D005910 ORTHO05D007088 3.0e-41 172.6 116 81.0
MD11G1118600 Malus domestica HOM05D005910 ORTHO05D007088 1.5e-40 170.2 132 72.0
CSS0024230 Camellia sinensis var. sinensis HOM05D005910 ORTHO05D007088 4.3e-40 168.7 191 55.0
DCAR_009688 Daucus carota HOM05D005910 ORTHO05D007088 3.8e-36 155.6 101 77.2
Haze_26182 Corylus avellana HOM05D005910 ORTHO05D007088 4.6e-34 148.7 164 43.9
MD03G1239200 Malus domestica HOM05D005910 ORTHO05D007088 5.1e-33 145.2 136 65.4
MD00G1019800 Malus domestica HOM05D005910 ORTHO05D007088 9.6e-32 141.0 97 76.3
QL03p020127 Quercus lobata HOM05D005910 ORTHO05D007088 2.4e-30 136.3 90 78.9
QL07p006238 Quercus lobata HOM05D005910 ORTHO05D007088 1.3e-28 130.6 106 67.9
Glyma.07G000600 Glycine max HOM05D005910 ORTHO05D007088 1.2e-26 124.0 71 94.4
CDE06G1328 Ceratophyllum demersum HOM05D005910 ORTHO05D007088 1.1e-22 110.9 82 74.4
PRCOL_00005630 Prasinoderma coloniale HOM05D005910 ORTHO05D007088 8.8e-17 91.3 170 31.2
Sabra08G0162900 Salix brachista HOM05D003359 ORTHO05D007088 2.0e-16 90.1 45 88.9
AUR62043130 Chenopodium quinoa HOM05D005910 ORTHO05D007088 1.7e-15 87.0 77 67.5
Cre03.g182900 Chlamydomonas reinhardtii HOM05D005910 ORTHO05D007088 3.4e-13 79.3 160 31.9
HanXRQChr13g0398341 Helianthus annuus HOM05D005910 ORTHO05D007088 7.9e-10 68.2 101 44.6
SGA_v2.0_scaffold105G30513 Striga asiatica HOM05D000825 ORTHO05D002486 1.8e-06 57.0 78 57.7
SGA_v2.0_scaffold131G34402 Striga asiatica HOM05D005910 ORTHO05D007088 4.1e-06 55.8 52 69.2


User provided reference genes

Program Settings