Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G5874 Trifolium pratense HOM05D003718 ORTHO05D004402 0.0e+00 1252.3 652 100.0
Psat6g054080 Pisum sativum HOM05D003718 ORTHO05D004402 0.0e+00 1120.1 646 89.9
Medtr1g069780 Medicago truncatula HOM05D003718 ORTHO05D004402 0.0e+00 1109.0 646 89.0
Ca_09672_v3 Cicer arietinum L. HOM05D003718 ORTHO05D004402 0.0e+00 1095.5 648 88.1
Lj5g0026512 Lotus japonicus HOM05D003718 ORTHO05D004402 6.8e-303 1043.5 645 83.3
Glyma.10G038000 Glycine max HOM05D003718 ORTHO05D004402 1.1e-297 1026.2 646 82.0
Phvul.007G191800 Phaseolus vulgaris HOM05D003718 ORTHO05D004402 8.9e-295 1016.5 646 81.6
Glyma.03G164400 Glycine max HOM05D003718 ORTHO05D004402 4.1e-292 1007.7 645 80.8
Glyma.19G165800 Glycine max HOM05D003718 ORTHO05D004402 5.1e-290 1000.7 645 80.3
Lalb_Chr02g0152551 Lupinus albus HOM05D003718 ORTHO05D004402 1.2e-288 996.1 645 79.5
Phvul.001G162000 Phaseolus vulgaris HOM05D003718 ORTHO05D004402 1.2e-288 996.1 645 79.5
Lalb_Chr21g0313961 Lupinus albus HOM05D003718 ORTHO05D004402 4.9e-285 984.2 645 79.7
VMungo1383G2169 Vigna mungo HOM05D003718 ORTHO05D004402 1.1e-284 983.0 645 78.4
VMungo0720G0687 Vigna mungo HOM05D003718 ORTHO05D004402 1.4e-279 966.1 646 77.1
arahy.Tifrunner.gnm1.ann1.FU7SP6 Arachis hypogaea HOM05D003718 ORTHO05D004402 2.9e-277 958.4 659 75.7
arahy.Tifrunner.gnm1.ann1.QXN52H Arachis hypogaea HOM05D003718 ORTHO05D004402 3.2e-276 954.9 659 75.6
arahy.Tifrunner.gnm1.ann1.EWE7BX Arachis hypogaea HOM05D003718 ORTHO05D004402 9.0e-271 936.8 684 72.5
arahy.Tifrunner.gnm1.ann1.B1YDGW Arachis hypogaea HOM05D003718 ORTHO05D004402 3.2e-268 928.3 685 72.3
Cfa013046 Carpinus fangiana HOM05D003718 ORTHO05D004402 9.6e-265 916.8 646 73.2
Dinv34637 Davidia involucrata HOM05D003718 ORTHO05D004402 9.6e-265 916.8 646 72.4
QL09p039591 Quercus lobata HOM05D003718 ORTHO05D004402 8.1e-264 913.7 665 71.9
Prupe.8G221600 Prunus persica HOM05D003718 ORTHO05D004402 9.3e-260 900.2 646 71.8
CiPaw.04G187700 Carya illinoinensis HOM05D003718 ORTHO05D004402 1.2e-259 899.8 646 71.4
CiPaw.03G266000 Carya illinoinensis HOM05D003718 ORTHO05D004402 1.6e-259 899.4 646 71.2
GSVIVG01028357001 Vitis vinifera HOM05D003718 ORTHO05D004402 1.6e-256 889.4 646 71.5
MD10G1181500 Malus domestica HOM05D003718 ORTHO05D004402 2.1e-256 889.0 652 70.2
MD05G1194900 Malus domestica HOM05D003718 ORTHO05D004402 3.7e-256 888.3 651 70.5
CsaV3_1G015830 Cucumis sativus L. HOM05D003718 ORTHO05D004402 8.2e-256 887.1 645 69.6
Atru.chr5.1725 Acer truncatum HOM05D003718 ORTHO05D004402 1.1e-255 886.7 646 71.1
CANSAT01G0671 Cannabis sativa HOM05D003718 ORTHO05D004402 1.8e-255 885.9 646 70.6
TWI12G1081 Tripterygium wilfordii HOM05D003718 ORTHO05D004402 7.6e-254 880.6 646 71.1
TWI75G1389 Tripterygium wilfordii HOM05D003718 ORTHO05D004402 1.3e-253 879.8 646 70.6
Actinidia07305 Actinidia chinensis HOM05D003718 ORTHO05D004402 1.7e-253 879.4 646 70.1
MELO3C025537.2 Cucumis melo HOM05D003718 ORTHO05D004402 1.7e-253 879.4 645 68.7
Psat3g056400 Pisum sativum HOM05D003718 ORTHO05D004402 8.4e-253 877.1 645 71.8
Thecc.01G255900 Theobroma cacao HOM05D003718 ORTHO05D004402 8.4e-253 877.1 647 68.6
Hma1.2p1_0273F.1_g109540 Hydrangea macrophylla HOM05D003718 ORTHO05D004402 1.1e-252 876.7 647 69.9
RcHm_v2.0_Chr6g0287811 Rosa chinensis HOM05D003718 ORTHO05D004402 1.4e-252 876.3 646 70.6
Sed0001928 Sechium edule HOM05D003718 ORTHO05D004402 1.6e-251 872.8 645 68.1
Gorai.001G179000 Gossypium raimondii HOM05D003718 ORTHO05D004402 2.1e-251 872.5 646 68.7
FvH4_2g21250 Fragaria vesca HOM05D003718 ORTHO05D004402 7.9e-251 870.5 646 70.1
vmacro14814 Vaccinium macrocarpon HOM05D003718 ORTHO05D004402 1.3e-250 869.8 645 69.1
Gohir.D07G156100 Gossypium hirsutum HOM05D003718 ORTHO05D004402 1.8e-250 869.4 646 68.6
CSS0049010 Camellia sinensis var. sinensis HOM05D003718 ORTHO05D004402 6.7e-250 867.5 646 69.8
FAN15G3248 Fragaria x ananassa HOM05D003718 ORTHO05D004402 1.1e-249 866.7 651 69.1
FAN24G2691 Fragaria x ananassa HOM05D003718 ORTHO05D004402 7.4e-249 864.0 651 69.6
Potri.005G226100 Populus trichocarpa HOM05D003718 ORTHO05D004402 9.7e-249 863.6 646 68.6
TPR.G9204 Trifolium pratense HOM05D003718 ORTHO05D004402 1.3e-248 863.2 664 69.9
CSS0040480 Camellia sinensis var. sinensis HOM05D003718 ORTHO05D004402 1.6e-248 862.8 646 68.9
Duzib211G0290 Durio zibethinus HOM05D003718 ORTHO05D004402 3.7e-248 861.7 646 67.5
Gohir.A07G149800 Gossypium hirsutum HOM05D003718 ORTHO05D004402 1.4e-247 859.8 646 68.0
TAR633G0796 Trochodendron aralioides HOM05D003718 ORTHO05D004402 1.2e-246 856.7 647 68.3
Manes.12G033700 Manihot esculenta HOM05D003718 ORTHO05D004402 2.0e-246 855.9 646 68.9
Duzib133G1085 Durio zibethinus HOM05D003718 ORTHO05D004402 7.7e-246 854.0 646 67.6
Eucgr.K03255 Eucalyptus grandis HOM05D003718 ORTHO05D004402 1.7e-245 852.8 645 69.0
TAR362G0778 Trochodendron aralioides HOM05D003718 ORTHO05D004402 1.9e-244 849.4 649 68.6
Duzib138G1036 Durio zibethinus HOM05D003718 ORTHO05D004402 2.5e-244 849.0 646 67.3
Potri.002G036600 Populus trichocarpa HOM05D003718 ORTHO05D004402 3.2e-244 848.6 647 68.5
FAN27G0576 Fragaria x ananassa HOM05D003718 ORTHO05D004402 4.2e-244 848.2 684 66.1
Sabra05G0174600 Salix brachista HOM05D003718 ORTHO05D004402 5.5e-244 847.8 669 66.2
Ciclev10019124m.g Citrus clementina HOM05D003718 ORTHO05D004402 6.1e-243 844.3 646 68.0
Manes.13G035300 Manihot esculenta HOM05D003718 ORTHO05D004402 3.0e-242 842.0 646 68.4
Ca_08683_v3 Cicer arietinum L. HOM05D003718 ORTHO05D004402 5.1e-242 841.3 648 70.4
Gorai.007G147600 Gossypium raimondii HOM05D003718 ORTHO05D004402 3.4e-238 828.6 646 65.2
PGR031G0689 Punica granatum HOM05D003718 ORTHO05D004402 1.3e-237 826.6 646 66.4
THA.LOC104806254 Tarenaya hassleriana HOM05D003718 ORTHO05D004402 5.0e-237 824.7 646 66.3
THA.LOC104812416 Tarenaya hassleriana HOM05D003718 ORTHO05D004402 5.0e-237 824.7 647 67.1
Gohir.D11G137575 Gossypium hirsutum HOM05D003718 ORTHO05D004402 1.4e-236 823.2 646 64.9
Gohir.A11G131600 Gossypium hirsutum HOM05D003718 ORTHO05D004402 2.5e-236 822.4 646 65.5
Sopen05g027610 Solanum pennellii HOM05D003718 ORTHO05D004402 3.2e-236 822.0 646 66.1
Nn1g02814 Nelumbo nucifera HOM05D003718 ORTHO05D004402 9.4e-236 820.5 648 64.5
Sopen07g005600 Solanum pennellii HOM05D003718 ORTHO05D004402 3.6e-235 818.5 646 65.6
Solyc05g046330.4 Solanum lycopersicum HOM05D003718 ORTHO05D004402 7.9e-235 817.4 646 65.8
Sabra02G0029600 Salix brachista HOM05D003718 ORTHO05D004402 3.0e-234 815.5 679 64.4
Rhsim01G0262400 Rhododendron simsii HOM05D003718 ORTHO05D004402 3.9e-234 815.1 608 69.1
Solyc07g014700.4 Solanum lycopersicum HOM05D003718 ORTHO05D004402 1.1e-233 813.5 645 65.6
CARHR227730 Cardamine hirsuta HOM05D003718 ORTHO05D004402 2.0e-233 812.8 646 65.3
Aqoxy1G01842 Aquilegia oxysepala HOM05D003718 ORTHO05D004402 3.3e-233 812.0 646 63.6
CAN.G106.18 Capsicum annuum HOM05D003718 ORTHO05D004402 4.4e-233 811.6 646 65.6
MSTRG.21485 Avicennia marina HOM05D003718 ORTHO05D004402 1.3e-232 810.1 645 64.7
Migut.D00439 Erythranthe guttata HOM05D003718 ORTHO05D004402 2.8e-232 808.9 646 64.6
ClCG03G002590 Citrullus lanatus HOM05D003718 ORTHO05D004402 1.1e-231 807.0 645 64.8
Peaxi162Scf00320g00717 Petunia axillaris HOM05D003718 ORTHO05D004402 3.1e-231 805.4 646 65.0
AUR62013766 Chenopodium quinoa HOM05D003718 ORTHO05D004402 6.5e-229 797.7 636 64.5
CAN.G54.7 Capsicum annuum HOM05D003718 ORTHO05D004402 1.9e-228 796.2 646 63.8
Thhalv10024580m.g Eutrema salsugineum HOM05D003718 ORTHO05D004402 5.5e-228 794.7 646 65.3
Nn3g19693 Nelumbo nucifera HOM05D003718 ORTHO05D004402 7.2e-228 794.3 648 64.2
AL7G32970 Arabidopsis lyrata HOM05D003718 ORTHO05D004402 2.7e-227 792.3 646 65.2
Sp7g19230 Schrenkiella parvula HOM05D003718 ORTHO05D004402 8.0e-227 790.8 646 64.7
Carub.0007s2028 Capsella rubella HOM05D003718 ORTHO05D004402 3.0e-226 788.9 646 64.4
Cc01_g18200 Coffea canephora HOM05D003718 ORTHO05D004402 3.0e-226 788.9 648 62.5
PSO210G5136 Papaver somniferum HOM05D003718 ORTHO05D004402 2.6e-225 785.8 646 63.2
AT4G21150 Arabidopsis thaliana HOM05D003718 ORTHO05D004402 2.2e-224 782.7 646 64.4
ECA236G3831 Erigeron canadensis HOM05D003718 ORTHO05D004402 6.3e-224 781.2 646 63.0
PSO832G2930 Papaver somniferum HOM05D003718 ORTHO05D004402 6.3e-224 781.2 646 63.0
BcaC09g51252 Brassica carinata HOM05D003718 ORTHO05D004402 1.8e-223 779.6 646 63.9
BolC1t01458H Brassica oleracea HOM05D003718 ORTHO05D004402 4.1e-223 778.5 646 63.8
HanXRQChr04g0110491 Helianthus annuus HOM05D003718 ORTHO05D004402 2.6e-222 775.8 651 61.6
Oeu052043.2 Olea europaea HOM05D003718 ORTHO05D004402 3.5e-222 775.4 758 55.8
ATR0736G006 Amborella trichopoda HOM05D003718 ORTHO05D004402 4.5e-222 775.0 645 62.3
BcaNung03839 Brassica carinata HOM05D003718 ORTHO05D004402 2.9e-221 772.3 619 65.3
DCAR_000921 Daucus carota HOM05D003718 ORTHO05D004402 8.5e-221 770.8 646 61.6
SalBow4G0483 Salvia bowleyana HOM05D003718 ORTHO05D004402 1.0e-218 763.8 665 60.2
Os01g0911200 Oryza sativa ssp. japonica HOM05D003718 ORTHO05D004402 1.8e-218 763.1 649 59.9
CDE07G1087 Ceratophyllum demersum HOM05D003718 ORTHO05D004402 1.2e-217 760.4 646 61.0
BraA03t14340Z Brassica rapa HOM05D003718 ORTHO05D004402 2.0e-217 759.6 663 62.9
Lj1C68G8 Lonicera japonica HOM05D003718 ORTHO05D004402 9.8e-217 757.3 645 63.1
Lsat_1_v5_gn_8_92540 Lactuca sativa HOM05D003718 ORTHO05D004402 3.7e-216 755.4 643 61.1
CDE04G2599 Ceratophyllum demersum HOM05D003718 ORTHO05D004402 1.1e-215 753.8 646 60.8
Nitab4.5_0001572g0020 Nicotiana tabacum HOM05D003718 ORTHO05D004402 1.4e-215 753.4 646 61.8
EL10Ac1g00739 Beta vulgaris HOM05D003718 ORTHO05D004402 1.3e-213 746.9 654 59.9
Hund17111 Selenicereus undatus HOM05D003718 ORTHO05D004402 1.3e-213 746.9 599 63.4
Nitab4.5_0000413g0180 Nicotiana tabacum HOM05D003718 ORTHO05D004402 3.8e-213 745.3 646 61.9
A01p12510 Brassica napus HOM05D003718 ORTHO05D004402 6.5e-213 744.6 608 63.8
Zm00001eb143710 Zea mays HOM05D003718 ORTHO05D004402 1.5e-212 743.4 647 59.0
BraA01t01195Z Brassica rapa HOM05D003718 ORTHO05D004402 4.2e-212 741.9 608 63.7
C01p15100 Brassica napus HOM05D003718 ORTHO05D004402 8.0e-211 737.6 607 63.1
SGA_v2.0_scaffold1G00624 Striga asiatica HOM05D003718 ORTHO05D004402 4.4e-209 731.9 646 61.0
SGA_v2.0_scaffold138G35211 Striga asiatica HOM05D003718 ORTHO05D004402 5.7e-209 731.5 741 54.9
Zm00001eb365020 Zea mays HOM05D003718 ORTHO05D004402 2.8e-208 729.2 647 58.7
Peaxi162Scf00906g00225 Petunia axillaris HOM05D003718 ORTHO05D004402 1.4e-207 726.9 676 58.4
Aa31LG6G3160 Aethionema arabicum HOM05D003718 ORTHO05D004402 1.8e-207 726.5 614 63.0
A03p52670 Brassica napus HOM05D003718 ORTHO05D004402 2.3e-205 719.5 616 63.0
C07p51100 Brassica napus HOM05D003718 ORTHO05D004402 1.9e-204 716.5 616 62.5
BolC7t45610H Brassica oleracea HOM05D003718 ORTHO05D004402 1.9e-204 716.5 616 62.5
Rhsim13G0036100 Rhododendron simsii HOM05D003718 ORTHO05D004402 3.6e-203 712.2 567 65.8
HPP92_000351 Vanilla planifolia HOM05D003718 ORTHO05D004402 2.3e-202 709.5 614 60.3
COL.COLO4_04023 Corchorus olitorius HOM05D003718 ORTHO05D004402 3.4e-201 705.7 579 63.6
Sc02g0003190 Simmondsia chinensis HOM05D003718 ORTHO05D004402 2.7e-198 696.0 575 63.5
Lsat_1_v5_gn_5_182920 Lactuca sativa HOM05D003718 ORTHO05D004402 3.9e-197 692.2 648 57.9
AUR62023389 Chenopodium quinoa HOM05D003718 ORTHO05D004402 4.3e-196 688.7 636 58.6
BolC3t20629H Brassica oleracea HOM05D003718 ORTHO05D004402 1.7e-189 666.8 689 55.3
unitig_22.g5287 Utricularia gibba HOM05D003718 ORTHO05D004402 2.6e-185 652.9 662 53.8
C03p83480 Brassica napus HOM05D003718 ORTHO05D004402 1.2e-182 644.0 698 53.7
unitig_8.g3735 Utricularia gibba HOM05D003718 ORTHO05D004402 2.0e-177 626.7 654 52.1
Nitab4.5_0005411g0050 Nicotiana tabacum HOM05D003718 ORTHO05D004402 1.9e-172 610.1 621 54.3
BcaC01g00710 Brassica carinata HOM05D003718 ORTHO05D004402 8.9e-170 601.3 550 60.9
Cpa.g.sc20.44 Carica papaya HOM05D003718 ORTHO05D004402 1.1e-162 577.8 646 52.0
Ah.05g177770 Amaranthus hybridus HOM05D003718 ORTHO05D004402 6.4e-160 568.5 491 59.3
Psat0ss9065g0080 Pisum sativum HOM05D003718 ORTHO05D004402 4.2e-151 539.3 386 76.4
Nitab4.5_0005095g0020 Nicotiana tabacum HOM05D003718 ORTHO05D004402 1.9e-148 530.4 503 56.1
CsaV3_UNG055470 Cucumis sativus L. HOM05D003718 ORTHO05D004402 2.3e-141 506.9 438 62.1
Mapoly0028s0115 Marchantia polymorpha HOM05D003718 ORTHO05D004402 2.4e-130 470.3 650 42.3
Actinidia37517 Actinidia chinensis HOM05D003718 ORTHO05D004402 3.1e-130 469.9 537 51.6
AUR62043414 Chenopodium quinoa HOM05D003718 ORTHO05D004402 3.0e-125 453.4 352 65.3
SEGI_27157 Sequoiadendron giganteum HOM05D003718 ORTHO05D004402 4.2e-103 379.8 361 54.0
vmacro02673 Vaccinium macrocarpon HOM05D003718 ORTHO05D004402 4.2e-103 379.8 321 63.9
A08p15230 Brassica napus HOM05D003718 ORTHO05D001664 4.4e-100 369.8 522 44.4
EL10Ac1g02094 Beta vulgaris HOM05D003718 ORTHO05D004402 4.2e-95 353.2 309 59.2
HanXRQChr11g0336771 Helianthus annuus HOM05D003718 ORTHO05D004402 2.8e-91 340.5 379 51.7
FAN20G1425 Fragaria x ananassa HOM05D003718 ORTHO05D004402 6.3e-91 339.3 266 68.0
Psat7g093680 Pisum sativum HOM05D003718 ORTHO05D004402 9.5e-87 325.5 299 63.5
Haze_21407 Corylus avellana HOM05D003718 ORTHO05D004402 3.0e-80 303.9 261 63.6
AagrBONN_evm.TU.Sc2ySwM_340.234 Anthoceros agrestis HOM05D003718 ORTHO05D004402 1.9e-79 301.2 419 44.6
CBR_g32152 Chara braunii HOM05D003718 ORTHO05D004402 1.1e-66 258.8 655 31.8
Pp3c7_6480 Physcomitrium patens HOM05D003718 ORTHO05D004402 1.5e-63 248.4 380 42.1
Hma1.2p1_0576F.1_g181950 Hydrangea macrophylla HOM05D003718 ORTHO05D004402 7.3e-63 246.1 294 51.0
Actinidia09538 Actinidia chinensis HOM05D003718 ORTHO05D004402 1.1e-55 222.2 156 74.4
Actinidia09536 Actinidia chinensis HOM05D003718 ORTHO05D004402 4.2e-50 203.8 266 47.4
FAN27G1677 Fragaria x ananassa HOM05D003718 ORTHO05D004402 4.3e-47 193.7 187 54.5
HPP92_000418 Vanilla planifolia HOM05D003718 ORTHO05D004402 1.7e-43 181.8 609 27.6
arahy.Tifrunner.gnm1.ann1.S1G2KX Arachis hypogaea HOM05D003718 ORTHO05D004402 1.9e-42 178.3 117 74.4
SEGI_31370 Sequoiadendron giganteum HOM05D003718 ORTHO05D004402 2.1e-41 174.9 205 48.8
Psat6g086960 Pisum sativum HOM05D003718 ORTHO05D004402 2.0e-36 158.3 96 82.3
Actinidia09537 Actinidia chinensis HOM05D003718 ORTHO05D004402 2.1e-30 138.3 163 46.6
SMO367G0218 Selaginella moellendorffii HOM05D003718 ORTHO05D004402 2.8e-30 137.9 138 54.3
SHI09762 Sapria himalayana HOM05D003718 ORTHO05D004402 2.0e-28 131.7 147 51.0
CsaV3_UNG055460 Cucumis sativus L. HOM05D003718 ORTHO05D004402 7.6e-28 129.8 149 47.7
Actinidia30158 Actinidia chinensis HOM05D003718 ORTHO05D004402 1.2e-25 122.5 88 65.9
arahy.Tifrunner.gnm1.ann1.6B4W14 Arachis hypogaea HOM05D003718 ORTHO05D004402 1.2e-25 122.5 79 77.2
arahy.Tifrunner.gnm1.ann1.EX0EXI Arachis hypogaea HOM05D004703 ORTHO05D005801 3.5e-25 120.9 80 75.0
arahy.Tifrunner.gnm1.ann1.N0B60F Arachis hypogaea HOM05D003718 ORTHO05D004402 3.5e-25 120.9 80 75.0
Actinidia25800 Actinidia chinensis HOM05D003718 ORTHO05D004402 6.0e-25 120.2 196 41.3
Psat6g087000 Pisum sativum HOM05D003718 ORTHO05D004402 4.3e-23 114.0 68 83.8
Cre08.g368450 Chlamydomonas reinhardtii HOM05D003718 ORTHO05D004402 2.6e-20 104.8 220 39.5
arahy.Tifrunner.gnm1.ann1.LM6F6Z Arachis hypogaea HOM05D003718 ORTHO05D004402 4.2e-18 97.4 123 47.2
Actinidia30157 Actinidia chinensis HOM05D003718 ORTHO05D057597 8.7e-16 89.7 86 55.8
Lsat_1_v5_gn_3_107020 Lactuca sativa HOM05D003718 ORTHO05D004402 6.9e-13 80.1 107 43.0
Actinidia25801 Actinidia chinensis HOM05D003718 ORTHO05D004402 4.5e-12 77.4 105 43.8
Lsat_1_v5_gn_4_881 Lactuca sativa HOM05D003718 ORTHO05D004402 2.2e-11 75.1 128 35.9
Gohir.A01G185580 Gossypium hirsutum HOM05D003718 ORTHO05D000087 4.6e-09 67.4 68 54.4


User provided reference genes

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