Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G5833 Trifolium pratense HOM05D000028 ORTHO05D006165 1.0e-48 196.4 100 100.0
TPR.G5815 Trifolium pratense HOM05D000028 ORTHO05D006165 1.7e-32 142.5 91 78.0
Medtr5g069040 Medicago truncatula HOM05D000028 ORTHO05D006165 1.9e-31 139.0 93 75.3
Medtr5g068790 Medicago truncatula HOM05D000028 ORTHO05D006165 3.3e-31 138.3 93 75.3
TPR.G5790 Trifolium pratense HOM05D000028 ORTHO05D006165 2.0e-28 129.0 100 68.0
Lalb_Chr17g0344771 Lupinus albus HOM05D000028 ORTHO05D006165 1.9e-26 122.5 92 66.3
Medtr3g019050 Medicago truncatula HOM05D000028 ORTHO05D006165 1.2e-25 119.8 100 66.0
LjContig00155g0002347 Lotus japonicus HOM05D000028 ORTHO05D006165 1.6e-25 119.4 92 67.4
Psat2g061960 Pisum sativum HOM05D000028 ORTHO05D006165 1.6e-25 119.4 91 65.9
Lalb_Chr10g0103061 Lupinus albus HOM05D000028 ORTHO05D006165 2.7e-25 118.6 91 67.0
Phvul.009G039200 Phaseolus vulgaris HOM05D000028 ORTHO05D006165 3.5e-25 118.2 93 62.4
Glyma.02G222100 Glycine max HOM05D000028 ORTHO05D006165 7.8e-25 117.1 92 63.0
Glyma.06G138300 Glycine max HOM05D000028 ORTHO05D006165 1.7e-24 115.9 93 62.4
Glyma.14G189200 Glycine max HOM05D000028 ORTHO05D006165 3.9e-24 114.8 93 62.4
Glyma.02G222000 Glycine max HOM05D000028 ORTHO05D006165 1.1e-23 113.2 93 60.2
arahy.Tifrunner.gnm1.ann1.6MS9TD Arachis hypogaea HOM05D000028 ORTHO05D006165 1.5e-23 112.8 93 64.5
Psat2g061920 Pisum sativum HOM05D000028 ORTHO05D006165 1.9e-23 112.5 93 61.3
arahy.Tifrunner.gnm1.ann1.BCU2N4 Arachis hypogaea HOM05D000028 ORTHO05D006165 7.3e-23 110.5 93 63.4
VMungo0647G2198 Vigna mungo HOM05D000028 ORTHO05D006165 2.8e-22 108.6 93 60.2
LjContig00155g0011791 Lotus japonicus HOM05D000028 ORTHO05D006165 1.8e-21 105.9 86 61.6
Psat7g236960 Pisum sativum HOM05D000028 ORTHO05D006165 2.4e-21 105.5 93 55.9
Prupe.2G320900 Prunus persica HOM05D000028 ORTHO05D006165 6.9e-21 104.0 91 54.9
CiPaw.05G207400 Carya illinoinensis HOM05D000028 ORTHO05D006165 1.5e-20 102.8 91 57.1
Atru.chr12.2465 Acer truncatum HOM05D000028 ORTHO05D006165 3.4e-20 101.7 91 54.9
Atru.chr12.2469 Acer truncatum HOM05D000028 ORTHO05D006165 3.4e-20 101.7 91 54.9
Atru.chr12.2536 Acer truncatum HOM05D000028 ORTHO05D006165 3.4e-20 101.7 91 54.9
Cfa016142 Carpinus fangiana HOM05D002523 ORTHO05D002951 5.8e-20 100.9 90 56.7
MD01G1230200 Malus domestica HOM05D000028 ORTHO05D006165 5.8e-20 100.9 91 53.8
QL09p006522 Quercus lobata HOM05D000028 ORTHO05D006165 1.3e-19 99.8 91 56.0
Sabra12G0036300 Salix brachista HOM05D000028 ORTHO05D006165 1.3e-19 99.8 91 57.1
PGR042G1905 Punica granatum HOM05D000028 ORTHO05D006165 2.2e-19 99.0 92 54.3
Duzib068G0829 Durio zibethinus HOM05D000028 ORTHO05D006165 2.9e-19 98.6 92 54.3
CSS0030757 Camellia sinensis var. sinensis HOM05D000028 ORTHO05D006165 3.8e-19 98.2 92 52.2
Thecc.03G211000 Theobroma cacao HOM05D000028 ORTHO05D006165 3.8e-19 98.2 92 52.2
CiPaw.06G039100 Carya illinoinensis HOM05D000028 ORTHO05D006165 8.4e-19 97.1 91 54.9
Eucgr.A00970 Eucalyptus grandis HOM05D000028 ORTHO05D006165 1.1e-18 96.7 94 55.3
CANSAT21G0777 Cannabis sativa HOM05D000028 ORTHO05D006165 1.4e-18 96.3 90 55.6
CANSAT21G1010 Cannabis sativa HOM05D000028 ORTHO05D006165 1.4e-18 96.3 90 55.6
Hma1.2p1_0415F.1_g148310 Hydrangea macrophylla HOM05D000028 ORTHO05D006165 1.4e-18 96.3 90 53.3
Phvul.008G188800 Phaseolus vulgaris HOM05D000028 ORTHO05D006165 1.4e-18 96.3 70 68.6
FvH4_7g33100 Fragaria vesca HOM05D000028 ORTHO05D006165 1.9e-18 95.9 91 50.5
FAN03G0459 Fragaria x ananassa HOM05D000028 ORTHO05D006165 2.4e-18 95.5 90 51.1
RcHm_v2.0_Chr1g0383151 Rosa chinensis HOM05D000028 ORTHO05D006165 2.4e-18 95.5 91 50.5
Gohir.A12G245400 Gossypium hirsutum HOM05D000028 ORTHO05D006165 5.4e-18 94.4 92 53.3
Potri.012G007700 Populus trichocarpa HOM05D000028 ORTHO05D006165 5.4e-18 94.4 91 53.8
Dinv29200 Davidia involucrata HOM05D000028 ORTHO05D006165 7.1e-18 94.0 91 51.6
FAN10G1022 Fragaria x ananassa HOM05D000028 ORTHO05D006165 7.1e-18 94.0 91 49.5
FAN10G2170 Fragaria x ananassa HOM05D000028 ORTHO05D006165 7.1e-18 94.0 91 49.5
Gohir.D12G246100 Gossypium hirsutum HOM05D000028 ORTHO05D006165 7.1e-18 94.0 92 53.3
Gorai.008G263800 Gossypium raimondii HOM05D000028 ORTHO05D006165 7.1e-18 94.0 92 53.3
CSS0021266 Camellia sinensis var. sinensis HOM05D000028 ORTHO05D006165 1.2e-17 93.2 92 50.0
COL.COLO4_14388 Corchorus olitorius HOM05D000028 ORTHO05D006165 1.6e-17 92.8 91 51.6
FAN01G0940 Fragaria x ananassa HOM05D000028 ORTHO05D006165 1.6e-17 92.8 91 48.4
vmacro06464 Vaccinium macrocarpon HOM05D000028 ORTHO05D006165 1.6e-17 92.8 91 49.5
Dinv17287 Davidia involucrata HOM05D000028 ORTHO05D006165 4.6e-17 91.3 91 50.5
PGR083G1462 Punica granatum HOM05D000028 ORTHO05D006165 6.0e-17 90.9 86 53.5
Lj1A1030G34 Lonicera japonica HOM05D000028 ORTHO05D006165 1.0e-16 90.1 78 61.5
Medtr5g089390 Medicago truncatula HOM05D000028 ORTHO05D006165 2.3e-16 89.0 91 52.7
CANSAT21G0119 Cannabis sativa HOM05D000028 ORTHO05D006165 3.9e-16 88.2 76 59.2
Gohir.D04G000005 Gossypium hirsutum HOM05D000028 ORTHO05D006165 5.1e-16 87.8 96 47.9
Gohir.D04G000700 Gossypium hirsutum HOM05D000028 ORTHO05D006165 5.1e-16 87.8 96 47.9
Sc07g0009810 Simmondsia chinensis HOM05D000028 ORTHO05D006165 5.1e-16 87.8 90 50.0
CSS0029142 Camellia sinensis var. sinensis HOM05D000028 ORTHO05D006165 6.7e-16 87.4 95 47.4
Haze_00318 Corylus avellana HOM05D000028 ORTHO05D006165 1.5e-15 86.3 67 62.7
Gorai.012G001700 Gossypium raimondii HOM05D000028 ORTHO05D006165 1.5e-15 86.3 96 46.9
TAR375G0937 Trochodendron aralioides HOM05D000028 ORTHO05D006165 1.5e-15 86.3 91 50.5
Sed0025832 Sechium edule HOM05D000028 ORTHO05D006165 1.9e-15 85.9 87 51.7
Actinidia34281 Actinidia chinensis HOM05D000028 ORTHO05D006165 7.4e-15 84.0 84 50.0
CANSAT21G1254 Cannabis sativa HOM05D000028 ORTHO05D006165 7.4e-15 84.0 91 53.8
Cc01_g04610 Coffea canephora HOM05D000028 ORTHO05D006165 9.6e-15 83.6 90 46.7
Nn6g33769 Nelumbo nucifera HOM05D000028 ORTHO05D006165 3.7e-14 81.6 92 45.7
Sabra12G0009200 Salix brachista HOM05D000028 ORTHO05D006165 3.7e-14 81.6 91 49.5
Solyc03g080070.4 Solanum lycopersicum HOM05D000028 ORTHO05D006165 3.7e-14 81.6 91 49.5
vmacro06462 Vaccinium macrocarpon HOM05D000028 ORTHO05D006165 3.7e-14 81.6 89 46.1
Sopen03g021800 Solanum pennellii HOM05D000028 ORTHO05D006165 6.2e-14 80.9 91 49.5
Ah.07g204340 Amaranthus hybridus HOM05D000028 ORTHO05D006165 8.1e-14 80.5 60 60.0
CAN.G303.44 Capsicum annuum HOM05D000028 ORTHO05D006165 1.4e-13 79.7 93 47.3
Oeu017363.1 Olea europaea HOM05D000028 ORTHO05D006165 1.4e-13 79.7 85 51.8
Peaxi162Scf01026g00264 Petunia axillaris HOM05D000028 ORTHO05D006165 1.8e-13 79.3 91 47.3
SalBow4G1903 Salvia bowleyana HOM05D000028 ORTHO05D006165 3.1e-13 78.6 91 46.2
SalBow4G2108 Salvia bowleyana HOM05D000028 ORTHO05D006165 3.1e-13 78.6 91 46.2
Hund09730 Selenicereus undatus HOM05D000028 ORTHO05D006165 3.1e-13 78.6 91 46.2
SGA_v2.0_scaffold18G08484 Striga asiatica HOM05D000028 ORTHO05D006165 5.3e-13 77.8 91 42.9
Peaxi162Scf00542g00017 Petunia axillaris HOM05D000028 ORTHO05D006165 6.9e-13 77.4 87 48.3
Cpa.g.sc3.172 Carica papaya HOM05D000028 ORTHO05D006165 1.2e-12 76.6 84 46.4
MBI04_g33446_MAGBIO Magnolia biondii HOM05D000028 ORTHO05D006165 1.2e-12 76.6 100 45.0
Migut.F00134 Erythranthe guttata HOM05D000028 ORTHO05D006165 1.5e-12 76.3 91 45.1
Lalb_Chr17g0344801 Lupinus albus HOM05D000028 ORTHO05D006165 1.5e-12 76.3 48 83.3
Hund21075 Selenicereus undatus HOM05D000028 ORTHO05D006165 1.0e-11 73.6 80 46.2
HPP92_008984 Vanilla planifolia HOM05D000028 ORTHO05D006165 1.3e-11 73.2 88 47.7
DCAR_014596 Daucus carota HOM05D000028 ORTHO05D006165 1.7e-11 72.8 90 45.6
Rhsim03G0217300 Rhododendron simsii HOM05D000028 ORTHO05D006165 1.7e-11 72.8 78 47.4
SGA_v2.0_scaffold5G02751 Striga asiatica HOM05D000028 ORTHO05D006165 1.7e-11 72.8 91 40.7
Cc03_g14930 Coffea canephora HOM05D000028 ORTHO05D006165 4.9e-11 71.2 92 39.1
Cpa.g.sc3.173 Carica papaya HOM05D000028 ORTHO05D006165 6.5e-11 70.9 78 47.4
ClCG07G009680 Citrullus lanatus HOM05D000028 ORTHO05D006165 1.9e-10 69.3 74 48.6
Nitab4.5_0000021g0050 Nicotiana tabacum HOM05D000028 ORTHO05D006165 1.9e-10 69.3 64 54.7
Peaxi162Scf01026g00265 Petunia axillaris HOM05D000028 ORTHO05D006165 2.5e-10 68.9 107 37.4
MBI04_g33445_MAGBIO Magnolia biondii HOM05D000028 ORTHO05D006165 2.1e-09 65.9 91 45.1
Sc13g0010620 Simmondsia chinensis HOM05D000028 ORTHO05D006165 7.9e-09 63.9 95 36.8
Lj6C588G11 Lonicera japonica HOM05D000028 ORTHO05D006165 2.5e-07 58.9 84 39.3
Os10g0199500 Oryza sativa ssp. japonica HOM05D000028 ORTHO05D006165 2.5e-07 58.9 83 39.8
HPP92_022289 Vanilla planifolia HOM05D000028 ORTHO05D006165 4.3e-07 58.2 80 42.5
Os10g0198900 Oryza sativa ssp. japonica HOM05D000028 ORTHO05D006165 1.6e-06 56.2 83 41.0


User provided reference genes

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