Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G579 Trifolium pratense HOM05D000296 ORTHO05D412104 3.7e-44 181.4 110 100.0
Medtr1g097690 Medicago truncatula HOM05D000296 ORTHO05D000175 3.2e-35 151.8 111 85.6
TPR.G17010 Trifolium pratense HOM05D000296 ORTHO05D014139 2.7e-34 148.7 110 72.7
Psat6g190200 Pisum sativum HOM05D000296 ORTHO05D000175 5.6e-32 141.0 111 69.4
Ca_10657_v3 Cicer arietinum L. HOM05D000296 ORTHO05D000175 4.6e-26 121.3 105 72.4
Phvul.007G084100 Phaseolus vulgaris HOM05D000296 ORTHO05D000175 4.4e-21 104.8 105 55.2
VMungo0720G2204 Vigna mungo HOM05D000296 ORTHO05D000175 5.8e-21 104.4 105 61.0
Glyma.10G221000 Glycine max HOM05D000296 ORTHO05D000175 9.9e-21 103.6 105 61.9
Lj5g0009097 Lotus japonicus HOM05D000296 ORTHO05D000175 1.7e-20 102.8 105 59.0
VMungo0464G0638 Vigna mungo HOM05D000296 ORTHO05D000175 3.2e-19 98.6 108 59.3
Phvul.004G089300 Phaseolus vulgaris HOM05D000296 ORTHO05D000175 9.2e-19 97.1 108 58.3
Ca_04666_v3 Cicer arietinum L. HOM05D000296 ORTHO05D000175 1.2e-18 96.7 107 61.7
Glyma.02G078700 Glycine max HOM05D000296 ORTHO05D000175 2.7e-18 95.5 96 57.3
Medtr6g042240 Medicago truncatula HOM05D000296 ORTHO05D000175 3.5e-18 95.1 119 60.5
Lj2g0020311 Lotus japonicus HOM05D000296 ORTHO05D000175 8.7e-17 90.5 96 59.4
Glyma.20G170500 Glycine max HOM05D000296 ORTHO05D000175 1.5e-16 89.7 54 79.6
Lalb_Chr03g0035621 Lupinus albus HOM05D000296 ORTHO05D000175 3.3e-16 88.6 114 50.9
Lalb_Chr01g0009841 Lupinus albus HOM05D000296 ORTHO05D000175 7.3e-16 87.4 122 43.4
Glyma.16G161500 Glycine max HOM05D000296 ORTHO05D000175 1.6e-15 86.3 98 52.0
TPR.G19694 Trifolium pratense HOM05D000296 ORTHO05D000175 6.2e-15 84.3 98 64.3
GSVIVG01001428001 Vitis vinifera HOM05D000296 ORTHO05D000175 1.4e-14 83.2 96 44.8
Psat1g075200 Pisum sativum HOM05D000296 ORTHO05D000175 1.8e-14 82.8 101 51.5
Cc10_g15370 Coffea canephora HOM05D000296 ORTHO05D000175 2.4e-14 82.4 97 45.4
Glyma.17G178700 Glycine max HOM05D000296 ORTHO05D000175 2.4e-14 82.4 50 78.0
Lalb_Chr06g0161771 Lupinus albus HOM05D000296 ORTHO05D000175 3.1e-14 82.0 106 50.9
Hma1.2p1_0678F.1_g202070 Hydrangea macrophylla HOM05D000296 ORTHO05D000175 1.2e-13 80.1 103 38.8
vmacro01500 Vaccinium macrocarpon HOM05D000296 ORTHO05D000175 4.4e-13 78.2 97 44.3
Prupe.8G042000 Prunus persica HOM05D000296 ORTHO05D000175 7.6e-13 77.4 109 52.3
Nitab4.5_0000099g0280 Nicotiana tabacum HOM05D000296 ORTHO05D000175 9.9e-13 77.0 106 46.2
Nitab4.5_0003770g0010 Nicotiana tabacum HOM05D000296 ORTHO05D000175 9.9e-13 77.0 96 46.9
Rhsim11G0088300 Rhododendron simsii HOM05D000296 ORTHO05D000175 9.9e-13 77.0 105 41.0
Sed0021754 Sechium edule HOM05D000296 ORTHO05D000175 1.7e-12 76.3 98 43.9
Lj4A704G65 Lonicera japonica HOM05D000296 ORTHO05D000175 2.2e-12 75.9 106 37.7
Nn5g28845 Nelumbo nucifera HOM05D000296 ORTHO05D000175 2.2e-12 75.9 107 40.2
RcHm_v2.0_Chr6g0274091 Rosa chinensis HOM05D000296 ORTHO05D000175 2.2e-12 75.9 109 44.0
CSS0041200 Camellia sinensis var. sinensis HOM05D000296 ORTHO05D000175 3.8e-12 75.1 112 45.5
Dinv41027 Davidia involucrata HOM05D000296 ORTHO05D000175 3.8e-12 75.1 100 42.0
FAN15G0313 Fragaria x ananassa HOM05D000296 ORTHO05D000175 4.9e-12 74.7 113 43.4
FAN27G1350 Fragaria x ananassa HOM05D000296 ORTHO05D000175 6.4e-12 74.3 114 42.1
Solyc04g072035.1 Solanum lycopersicum HOM05D000296 ORTHO05D000175 6.4e-12 74.3 97 51.5
CsaV3_6G004970 Cucumis sativus L. HOM05D000296 ORTHO05D000175 8.4e-12 73.9 104 40.4
PGSC0003DMG401025057 Solanum tuberosum HOM05D000296 ORTHO05D000175 1.4e-11 73.2 97 54.6
FvH4_2g12960 Fragaria vesca HOM05D000296 ORTHO05D000175 1.9e-11 72.8 106 43.4
FAN24G0269 Fragaria x ananassa HOM05D000296 ORTHO05D000175 1.9e-11 72.8 106 43.4
Sopen04g028070 Solanum pennellii HOM05D000296 ORTHO05D000175 1.9e-11 72.8 97 50.5
Cpa.g.sc26.105 Carica papaya HOM05D000296 ORTHO05D000175 2.4e-11 72.4 96 40.6
Ciclev10003927m.g Citrus clementina HOM05D000296 ORTHO05D000175 3.2e-11 72.0 102 41.2
MELO3C019974.2 Cucumis melo HOM05D000296 ORTHO05D000175 3.2e-11 72.0 122 38.5
Duzib116G0627 Durio zibethinus HOM05D000296 ORTHO05D000175 3.2e-11 72.0 107 41.1
Actinidia29556 Actinidia chinensis HOM05D000296 ORTHO05D000175 4.2e-11 71.6 97 43.3
DCAR_014321 Daucus carota HOM05D000296 ORTHO05D000175 4.2e-11 71.6 102 45.1
Duzib093G1361 Durio zibethinus HOM05D000296 ORTHO05D000175 4.2e-11 71.6 99 42.4
Manes.18G095500 Manihot esculenta HOM05D000296 ORTHO05D000175 4.2e-11 71.6 111 39.6
Lj7A385T62 Lonicera japonica HOM05D000296 ORTHO05D000175 5.4e-11 71.2 109 45.9
Sed0026590 Sechium edule HOM05D000296 ORTHO05D000175 7.1e-11 70.9 96 40.6
Manes.02G183900 Manihot esculenta HOM05D000296 ORTHO05D000175 1.2e-10 70.1 115 53.0
Peaxi162Scf00360g00076 Petunia axillaris HOM05D000296 ORTHO05D000175 1.2e-10 70.1 110 40.9
Thecc.08G161500 Theobroma cacao HOM05D000296 ORTHO05D000175 1.2e-10 70.1 106 40.6
PGR042G2467 Punica granatum HOM05D000296 ORTHO05D000175 2.7e-10 68.9 99 42.4
MSTRG.22110 Avicennia marina HOM05D000296 ORTHO05D000175 4.6e-10 68.2 88 38.6
TAR381G1472 Trochodendron aralioides HOM05D000296 ORTHO05D000175 4.6e-10 68.2 113 40.7
Potri.005G197800 Populus trichocarpa HOM05D000296 ORTHO05D000175 7.8e-10 67.4 105 39.0
arahy.Tifrunner.gnm1.ann1.58FISB Arachis hypogaea HOM05D000296 ORTHO05D000175 1.0e-09 67.0 116 49.1
arahy.Tifrunner.gnm1.ann1.R228Z3 Arachis hypogaea HOM05D000296 ORTHO05D000175 1.0e-09 67.0 116 49.1
SGA_v2.0_scaffold54G19683 Striga asiatica HOM05D000296 ORTHO05D000175 1.0e-09 67.0 108 36.1
CiPaw.16G008100 Carya illinoinensis HOM05D000296 ORTHO05D000175 1.3e-09 66.6 106 37.7
FAN20G0906 Fragaria x ananassa HOM05D000296 ORTHO05D000175 1.3e-09 66.6 113 41.6
Oeu061445.1 Olea europaea HOM05D000296 ORTHO05D000175 1.3e-09 66.6 108 38.9
THA.LOC104809750 Tarenaya hassleriana HOM05D000296 ORTHO05D000175 1.3e-09 66.6 106 50.0
MSTRG.24935 Avicennia marina HOM05D000296 ORTHO05D000175 1.7e-09 66.2 108 35.2
EL10Ac1g01611 Beta vulgaris HOM05D000296 ORTHO05D000175 1.7e-09 66.2 99 55.6
Gohir.A06G111700 Gossypium hirsutum HOM05D000296 ORTHO05D000175 2.3e-09 65.9 98 39.8
MD10G1036300 Malus domestica HOM05D000296 ORTHO05D000175 3.0e-09 65.5 108 38.9
PSO210G0632 Papaver somniferum HOM05D000296 ORTHO05D000175 3.0e-09 65.5 100 38.0
PSO170G6618 Papaver somniferum HOM05D000296 ORTHO05D000175 3.9e-09 65.1 108 35.2
Hund26677 Selenicereus undatus HOM05D000296 ORTHO05D000175 3.9e-09 65.1 111 36.9
Aqoxy6G00432 Aquilegia oxysepala HOM05D000296 ORTHO05D000175 8.7e-09 63.9 113 38.9
arahy.Tifrunner.gnm1.ann1.1QF40H Arachis hypogaea HOM05D000296 ORTHO05D000175 1.1e-08 63.5 106 38.7
arahy.Tifrunner.gnm1.ann1.C1S7XW Arachis hypogaea HOM05D000296 ORTHO05D000175 1.1e-08 63.5 106 38.7
HanXRQChr11g0320181 Helianthus annuus HOM05D000296 ORTHO05D000175 1.1e-08 63.5 103 34.0
ECA232G0559 Erigeron canadensis HOM05D000296 ORTHO05D000787 1.5e-08 63.2 113 35.4
TWI60G0117 Tripterygium wilfordii HOM05D000296 ORTHO05D000175 1.5e-08 63.2 93 41.9
Atru.chr13.1996 Acer truncatum HOM05D000296 ORTHO05D000175 1.9e-08 62.8 109 45.0
MD05G1034300 Malus domestica HOM05D000296 ORTHO05D000175 1.9e-08 62.8 97 47.4
Aqoxy5G02019 Aquilegia oxysepala HOM05D000296 ORTHO05D000175 2.5e-08 62.4 104 37.5
TWI34G0501 Tripterygium wilfordii HOM05D000296 ORTHO05D000175 2.5e-08 62.4 96 41.7
Actinidia04742 Actinidia chinensis HOM05D000296 ORTHO05D000175 3.3e-08 62.0 108 42.6
CiPaw.15G012000 Carya illinoinensis HOM05D000296 ORTHO05D000175 4.3e-08 61.6 111 48.6
Sc02g0003790 Simmondsia chinensis HOM05D000296 ORTHO05D000175 5.6e-08 61.2 96 45.8
Dinv02464 Davidia involucrata HOM05D000296 ORTHO05D000175 7.3e-08 60.8 52 55.8
Gohir.A02G062400 Gossypium hirsutum HOM05D000296 ORTHO05D000175 7.3e-08 60.8 115 36.5
Gohir.D02G068100 Gossypium hirsutum HOM05D000296 ORTHO05D000175 7.3e-08 60.8 115 36.5
Gorai.005G076900 Gossypium raimondii HOM05D000296 ORTHO05D000175 7.3e-08 60.8 115 36.5
Os01g0716800 Oryza sativa ssp. japonica HOM05D000296 ORTHO05D000175 7.3e-08 60.8 114 38.6
ATR0049G057 Amborella trichopoda HOM05D000296 ORTHO05D000175 9.6e-08 60.5 103 33.0
Migut.N02949 Erythranthe guttata HOM05D000296 ORTHO05D000175 9.6e-08 60.5 111 36.9
BcaB03g15615 Brassica carinata HOM05D000296 ORTHO05D000175 1.3e-07 60.1 121 34.7
C02p28890 Brassica napus HOM05D000296 ORTHO05D000175 1.3e-07 60.1 115 38.3
BolC2t08935H Brassica oleracea HOM05D000296 ORTHO05D000175 1.3e-07 60.1 115 38.3
CiPaw.16G008000 Carya illinoinensis HOM05D000296 ORTHO05D000175 1.3e-07 60.1 106 36.8
AT1G71710 Arabidopsis thaliana HOM05D000296 ORTHO05D000175 1.6e-07 59.7 125 40.0
BcaC03g15283 Brassica carinata HOM05D000296 ORTHO05D000175 1.6e-07 59.7 115 37.4
Potri.002G063500 Populus trichocarpa HOM05D000296 ORTHO05D000175 1.6e-07 59.7 105 38.1
BolC6t38662H Brassica oleracea HOM05D000296 ORTHO05D014139 2.1e-07 59.3 119 37.8
BolC6t38665H Brassica oleracea HOM05D000296 ORTHO05D000175 2.1e-07 59.3 119 37.8
Eucgr.F02685 Eucalyptus grandis HOM05D000296 ORTHO05D000175 2.1e-07 59.3 110 36.4
Gorai.009G286500 Gossypium raimondii HOM05D000296 ORTHO05D000175 2.1e-07 59.3 46 60.9
AUR62034886 Chenopodium quinoa HOM05D000296 ORTHO05D000175 2.8e-07 58.9 109 44.0
ClCG08G007300 Citrullus lanatus HOM05D000296 ORTHO05D000175 2.8e-07 58.9 49 57.1
AUR62026629 Chenopodium quinoa HOM05D000296 ORTHO05D000175 3.6e-07 58.5 106 34.9
Nn1g05991 Nelumbo nucifera HOM05D000296 ORTHO05D000175 3.6e-07 58.5 104 35.6
Lsat_1_v5_gn_6_101360 Lactuca sativa HOM05D000296 ORTHO05D000175 4.8e-07 58.2 96 38.5
SalBow6G1779 Salvia bowleyana HOM05D000296 ORTHO05D000175 6.2e-07 57.8 133 32.3
Thhalv10018239m.g Eutrema salsugineum HOM05D000296 ORTHO05D000175 8.1e-07 57.4 126 42.1
Gohir.A05G270998 Gossypium hirsutum HOM05D000296 ORTHO05D000175 8.1e-07 57.4 106 39.6
CARHR291080 Cardamine hirsuta HOM05D000296 ORTHO05D000175 1.1e-06 57.0 125 40.8
Sabra02G0051000 Salix brachista HOM05D000296 ORTHO05D000175 1.1e-06 57.0 93 35.5
Aa31LG4G8930 Aethionema arabicum HOM05D000296 ORTHO05D000175 1.4e-06 56.6 127 33.1
A02p17250 Brassica napus HOM05D000296 ORTHO05D000175 1.4e-06 56.6 115 35.7
BraA02t06772Z Brassica rapa HOM05D000296 ORTHO05D000175 1.4e-06 56.6 115 35.7
BolC6t38656H Brassica oleracea HOM05D000296 ORTHO05D000175 1.8e-06 56.2 119 48.7
SEGI_21938 Sequoiadendron giganteum HOM05D000296 ORTHO05D000175 1.8e-06 56.2 107 37.4
TWI34G0570 Tripterygium wilfordii HOM05D000296 ORTHO05D000175 1.8e-06 56.2 118 35.6
Zm00001eb154830 Zea mays HOM05D000296 ORTHO05D000175 1.8e-06 56.2 107 36.4
Ah.05g168220 Amaranthus hybridus HOM05D000296 ORTHO05D000175 2.4e-06 55.8 47 53.2
BcaC08g45760 Brassica carinata HOM05D000296 ORTHO05D000175 2.4e-06 55.8 119 48.7
BcaC08g45762 Brassica carinata HOM05D000296 ORTHO05D000175 2.4e-06 55.8 119 38.7
C06p35420 Brassica napus HOM05D000296 ORTHO05D000175 2.4e-06 55.8 119 48.7
BolC6t38658H Brassica oleracea HOM05D000296 ORTHO05D000175 2.4e-06 55.8 119 38.7
A07p30620 Brassica napus HOM05D000296 ORTHO05D000175 3.1e-06 55.5 119 48.7
ECA246G4754 Erigeron canadensis HOM05D000296 ORTHO05D000175 3.1e-06 55.5 96 36.5
QL02p037203 Quercus lobata HOM05D000296 ORTHO05D000175 3.1e-06 55.5 136 45.6
TAR628G0791 Trochodendron aralioides HOM05D000296 ORTHO05D000175 3.1e-06 55.5 100 39.0
Gohir.D08G179600 Gossypium hirsutum HOM05D000296 ORTHO05D000175 4.0e-06 55.1 103 32.0
Gorai.004G188100 Gossypium raimondii HOM05D000296 ORTHO05D000175 4.0e-06 55.1 103 32.0
C06p35440 Brassica napus HOM05D000296 ORTHO05D000175 5.3e-06 54.7 119 37.8
BolC5t32509H Brassica oleracea HOM05D000296 ORTHO05D000175 5.3e-06 54.7 96 35.4
BraA07t30697Z Brassica rapa HOM05D000296 ORTHO05D000175 5.3e-06 54.7 119 45.4
Thhalv10007233m.g Eutrema salsugineum HOM05D000296 ORTHO05D000175 5.3e-06 54.7 93 35.5
Sp5g26740 Schrenkiella parvula HOM05D000296 ORTHO05D000175 5.3e-06 54.7 126 42.9
BcaB05g24657 Brassica carinata HOM05D000296 ORTHO05D000175 6.9e-06 54.3 115 35.7
BcaC05g27766 Brassica carinata HOM05D000296 ORTHO05D000175 6.9e-06 54.3 96 35.4
C05p37670 Brassica napus HOM05D000296 ORTHO05D000175 6.9e-06 54.3 96 35.4
Carub.0006s2821 Capsella rubella HOM05D000296 ORTHO05D000175 6.9e-06 54.3 96 39.6
Medtr4g098850 Medicago truncatula HOM05D000296 ORTHO05D000175 6.9e-06 54.3 99 33.3
AT1G34120 Arabidopsis thaliana HOM05D000296 ORTHO05D000175 9.0e-06 53.9 98 34.7
arahy.Tifrunner.gnm1.ann1.LGR8BT Arachis hypogaea HOM05D000296 ORTHO05D000175 9.0e-06 53.9 109 42.2
arahy.Tifrunner.gnm1.ann1.P6RGT7 Arachis hypogaea HOM05D000296 ORTHO05D000175 9.0e-06 53.9 109 42.2
Migut.C00149 Erythranthe guttata HOM05D000296 ORTHO05D000175 9.0e-06 53.9 97 34.0


User provided reference genes

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