Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G5779 Trifolium pratense HOM05D005476 ORTHO05D006886 8.6e-218 760.0 371 100.0
Ca_05598_v3 Cicer arietinum L. HOM05D005476 ORTHO05D006886 2.1e-179 632.5 369 82.9
Medtr5g070350 Medicago truncatula HOM05D005476 ORTHO05D006886 4.9e-173 611.3 371 81.4
Psat2g058600 Pisum sativum HOM05D005476 ORTHO05D006886 6.0e-171 604.4 355 82.5
Glyma.14G193500 Glycine max HOM05D005476 ORTHO05D006886 1.4e-148 530.0 374 69.8
LjContig00155g0002690 Lotus japonicus HOM05D005476 ORTHO05D006886 2.7e-147 525.8 369 70.2
Glyma.02G226600 Glycine max HOM05D005476 ORTHO05D006886 1.3e-146 523.5 373 69.2
Phvul.008G261400 Phaseolus vulgaris HOM05D005476 ORTHO05D006886 1.4e-143 513.5 372 67.5
Lalb_Chr17g0345081 Lupinus albus HOM05D005476 ORTHO05D006886 1.1e-135 487.3 381 64.8
arahy.Tifrunner.gnm1.ann1.Q06W8H Arachis hypogaea HOM05D005476 ORTHO05D006886 3.1e-127 459.1 377 62.1
VMungo0647G0678 Vigna mungo HOM05D005476 ORTHO05D006886 1.2e-123 447.2 285 74.7
Dinv14437 Davidia involucrata HOM05D005476 ORTHO05D006886 5.5e-116 421.8 377 58.1
CiPaw.13G077600 Carya illinoinensis HOM05D005476 ORTHO05D006886 2.4e-111 406.4 373 56.3
Thecc.09G301800 Theobroma cacao HOM05D005476 ORTHO05D006886 3.1e-111 406.0 367 58.6
CiPaw.14G059600 Carya illinoinensis HOM05D005476 ORTHO05D006886 5.4e-111 405.2 356 58.4
Dinv28640 Davidia involucrata HOM05D005476 ORTHO05D006886 1.2e-110 404.1 377 57.8
QL01p038276 Quercus lobata HOM05D005476 ORTHO05D006886 2.7e-110 402.9 358 58.4
COL.COLO4_19157 Corchorus olitorius HOM05D005476 ORTHO05D006886 4.5e-110 402.1 365 58.1
Cfa011695 Carpinus fangiana HOM05D005476 ORTHO05D006886 7.7e-110 401.4 373 56.3
Haze_24322 Corylus avellana HOM05D005476 ORTHO05D006886 1.0e-109 401.0 329 61.4
Gorai.006G106700 Gossypium raimondii HOM05D005476 ORTHO05D006886 6.5e-109 398.3 363 57.9
Atru.chr3.4220 Acer truncatum HOM05D005476 ORTHO05D006886 3.2e-108 396.0 343 58.9
Duzib168G1303 Durio zibethinus HOM05D005476 ORTHO05D006886 3.2e-108 396.0 342 59.4
TAR636G1181 Trochodendron aralioides HOM05D005476 ORTHO05D006886 7.2e-108 394.8 354 56.2
Ciclev10028681m.g Citrus clementina HOM05D005476 ORTHO05D006886 2.7e-107 392.9 371 55.0
TAR633G0563 Trochodendron aralioides HOM05D005476 ORTHO05D006886 2.7e-107 392.9 379 53.8
CSS0011477 Camellia sinensis var. sinensis HOM05D005476 ORTHO05D006886 6.1e-107 391.7 382 56.0
RcHm_v2.0_Chr5g0069451 Rosa chinensis HOM05D005476 ORTHO05D006886 5.2e-106 388.7 329 59.3
Solyc06g076950.3 Solanum lycopersicum HOM05D005476 ORTHO05D006886 5.2e-106 388.7 372 55.4
Sopen06g033350 Solanum pennellii HOM05D005476 ORTHO05D006886 1.2e-105 387.5 372 55.1
CANSAT25G3760 Cannabis sativa HOM05D005476 ORTHO05D006886 2.0e-105 386.7 375 56.0
CSS0028478 Camellia sinensis var. sinensis HOM05D005476 ORTHO05D006886 2.6e-105 386.3 381 55.4
Cpa.g.sc415.4 Carica papaya HOM05D005476 ORTHO05D006886 3.4e-105 386.0 374 54.8
Peaxi162Scf00540g00426 Petunia axillaris HOM05D005476 ORTHO05D006886 3.4e-105 386.0 377 54.9
PGSC0003DMG400030356 Solanum tuberosum HOM05D005476 ORTHO05D006886 5.7e-105 385.2 380 54.5
Sabra09G0033300 Salix brachista HOM05D005476 ORTHO05D006886 4.9e-104 382.1 372 54.8
Potri.009G046200 Populus trichocarpa HOM05D005476 ORTHO05D006886 8.3e-104 381.3 372 54.8
Prupe.6G057500 Prunus persica HOM05D005476 ORTHO05D006886 8.3e-104 381.3 371 53.6
TWI31G0160 Tripterygium wilfordii HOM05D005476 ORTHO05D006886 8.3e-104 381.3 357 56.0
Duzib170G1024 Durio zibethinus HOM05D005476 ORTHO05D006886 2.4e-103 379.8 366 56.0
Nitab4.5_0000010g0290 Nicotiana tabacum HOM05D005476 ORTHO05D006886 2.4e-103 379.8 373 54.4
Eucgr.B02253 Eucalyptus grandis HOM05D005476 ORTHO05D006886 5.4e-103 378.6 333 56.5
Nn2g13708 Nelumbo nucifera HOM05D005476 ORTHO05D006886 1.2e-102 377.5 343 55.7
Nitab4.5_0001806g0030 Nicotiana tabacum HOM05D005476 ORTHO05D006886 1.2e-102 377.5 367 54.0
CAN.G394.127 Capsicum annuum HOM05D005476 ORTHO05D006886 3.5e-102 375.9 368 54.1
DCAR_007375 Daucus carota HOM05D005476 ORTHO05D006886 4.5e-102 375.6 364 55.5
FvH4_3g38550 Fragaria vesca HOM05D005476 ORTHO05D006886 7.7e-102 374.8 323 58.5
FAN16G3667 Fragaria x ananassa HOM05D005476 ORTHO05D006886 1.0e-101 374.4 323 58.5
Potri.001G251500 Populus trichocarpa HOM05D005476 ORTHO05D006886 1.0e-101 374.4 385 52.2
TWI79G0899 Tripterygium wilfordii HOM05D005476 ORTHO05D006886 2.3e-101 373.2 357 54.9
FAN11G1091 Fragaria x ananassa HOM05D005476 ORTHO05D006886 3.8e-101 372.5 323 58.2
Aqoxy2G00901 Aquilegia oxysepala HOM05D005476 ORTHO05D006886 8.6e-101 371.3 375 54.1
FAN21G0574 Fragaria x ananassa HOM05D005476 ORTHO05D006886 1.1e-100 370.9 323 58.2
MD11G1074700 Malus domestica HOM05D005476 ORTHO05D006886 2.5e-100 369.8 372 53.8
SGA_v2.0_scaffold146G36140 Striga asiatica HOM05D005476 ORTHO05D006886 2.5e-100 369.8 320 56.6
SGA_v2.0_scaffold120G32912 Striga asiatica HOM05D005476 ORTHO05D006886 3.3e-100 369.4 326 54.9
EL10Ac7g16167 Beta vulgaris HOM05D005476 ORTHO05D006886 1.2e-99 367.5 344 54.9
Lsat_1_v5_gn_9_20101 Lactuca sativa HOM05D005476 ORTHO05D006886 3.6e-99 365.9 321 57.9
Gohir.A09G090300 Gossypium hirsutum HOM05D005476 ORTHO05D006886 6.1e-99 365.2 276 64.9
Gohir.D09G090400 Gossypium hirsutum HOM05D005476 ORTHO05D006886 1.4e-98 364.0 276 65.2
MD03G1070700 Malus domestica HOM05D005476 ORTHO05D006886 1.8e-98 363.6 370 53.2
FAN25G3001 Fragaria x ananassa HOM05D005476 ORTHO05D006886 3.0e-98 362.8 349 54.2
vmacro02961 Vaccinium macrocarpon HOM05D005476 ORTHO05D006886 3.0e-98 362.8 430 47.7
THA.LOC104810712 Tarenaya hassleriana HOM05D005476 ORTHO05D006886 5.2e-98 362.1 295 60.0
Sed0016907 Sechium edule HOM05D005476 ORTHO05D006886 1.2e-97 360.9 362 51.1
ClCG03G000760 Citrullus lanatus HOM05D005476 ORTHO05D006886 1.5e-97 360.5 362 51.9
Cc01_g14180 Coffea canephora HOM05D005476 ORTHO05D006886 1.5e-97 360.5 328 54.9
Manes.02G119400 Manihot esculenta HOM05D005476 ORTHO05D006886 1.5e-97 360.5 331 54.4
Ah.08g221180 Amaranthus hybridus HOM05D005476 ORTHO05D006886 2.0e-97 360.1 334 54.5
ECA247G2000 Erigeron canadensis HOM05D005476 ORTHO05D006886 2.0e-97 360.1 373 51.7
Migut.N00789 Erythranthe guttata HOM05D005476 ORTHO05D006886 3.4e-97 359.4 356 53.7
Sed0014418 Sechium edule HOM05D005476 ORTHO05D006886 5.7e-97 358.6 362 52.5
SalBow2G2575 Salvia bowleyana HOM05D005476 ORTHO05D006886 1.7e-96 357.1 367 51.0
MELO3C020550.2 Cucumis melo HOM05D005476 ORTHO05D006886 6.4e-96 355.1 358 52.5
Thhalv10014005m.g Eutrema salsugineum HOM05D005476 ORTHO05D006886 6.4e-96 355.1 324 56.5
BraA10t43679Z Brassica rapa HOM05D005476 ORTHO05D006886 8.3e-96 354.8 321 57.9
Rhsim13G0069500 Rhododendron simsii HOM05D005476 ORTHO05D006886 1.8e-95 353.6 349 53.3
A10p15540 Brassica napus HOM05D005476 ORTHO05D006886 2.4e-95 353.2 322 57.1
AUR62020130 Chenopodium quinoa HOM05D005476 ORTHO05D006886 5.4e-95 352.1 371 51.5
Carub.0008s1935 Capsella rubella HOM05D005476 ORTHO05D006886 1.6e-94 350.5 324 55.2
Nn2g11493 Nelumbo nucifera HOM05D005476 ORTHO05D006886 1.6e-94 350.5 298 58.4
unitig_8.g3687 Utricularia gibba HOM05D005476 ORTHO05D006886 2.0e-94 350.1 330 53.6
Manes.01G161600 Manihot esculenta HOM05D005476 ORTHO05D006886 3.5e-94 349.4 341 53.4
Hund18848 Selenicereus undatus HOM05D005476 ORTHO05D006886 3.5e-94 349.4 326 54.3
AL8G35010 Arabidopsis lyrata HOM05D005476 ORTHO05D006886 4.6e-94 349.0 294 59.9
HanXRQChr04g0109161 Helianthus annuus HOM05D005476 ORTHO05D006886 4.6e-94 349.0 324 55.2
AUR62001646 Chenopodium quinoa HOM05D005476 ORTHO05D006886 1.0e-93 347.8 344 53.5
GSVIVG01024740001 Vitis vinifera HOM05D005476 ORTHO05D006886 1.0e-93 347.8 369 50.4
PSO801G0319 Papaver somniferum HOM05D005476 ORTHO05D006886 2.3e-93 346.7 297 57.2
Sp6g20420 Schrenkiella parvula HOM05D005476 ORTHO05D006886 3.0e-93 346.3 321 55.1
AT5G58730 Arabidopsis thaliana HOM05D005476 ORTHO05D006886 3.9e-93 345.9 294 59.2
C09p50810 Brassica napus HOM05D005476 ORTHO05D006886 3.9e-93 345.9 318 56.9
PSO339G1712 Papaver somniferum HOM05D005476 ORTHO05D006886 3.9e-93 345.9 297 56.9
BolC9t57941H Brassica oleracea HOM05D005476 ORTHO05D006886 5.0e-93 345.5 320 56.9
unitig_22.g5210 Utricularia gibba HOM05D005476 ORTHO05D006886 5.0e-93 345.5 356 50.8
MBI14_g42907_MAGBIO Magnolia biondii HOM05D005476 ORTHO05D006886 6.6e-93 345.1 324 54.0
Sc06g0008450 Simmondsia chinensis HOM05D005476 ORTHO05D006886 8.6e-93 344.7 334 53.9
Aa31LG11G490 Aethionema arabicum HOM05D005476 ORTHO05D006886 4.3e-92 342.4 321 56.1
CARHR272640 Cardamine hirsuta HOM05D005476 ORTHO05D006886 1.2e-91 340.9 322 55.0
PGR102G2402 Punica granatum HOM05D005476 ORTHO05D006886 2.8e-91 339.7 293 59.0
SalBow5G1841 Salvia bowleyana HOM05D005476 ORTHO05D006886 1.4e-90 337.4 320 53.4
BcaC04g19834 Brassica carinata HOM05D005476 ORTHO05D006886 1.3e-88 330.9 318 55.3
CsaV3_1G036180 Cucumis sativus L. HOM05D005476 ORTHO05D006886 2.9e-88 329.7 299 56.9
CDE04G1962 Ceratophyllum demersum HOM05D005476 ORTHO05D006886 2.4e-87 326.6 300 54.0
HPP92_002247 Vanilla planifolia HOM05D005476 ORTHO05D006886 2.5e-84 316.6 297 53.5
ATR0618G050 Amborella trichopoda HOM05D005476 ORTHO05D006886 9.5e-84 314.7 314 49.0
SalBow8G4850 Salvia bowleyana HOM05D005476 ORTHO05D006886 2.2e-80 303.5 320 49.7
SHI19142 Sapria himalayana HOM05D005476 ORTHO05D006886 2.2e-80 303.5 329 49.8
Lj1A137G45 Lonicera japonica HOM05D005476 ORTHO05D006886 2.1e-78 297.0 316 51.9
Os03g0737701 Oryza sativa ssp. japonica HOM05D005476 ORTHO05D006886 6.6e-77 292.0 338 46.7
Oeu013433.3 Olea europaea HOM05D005476 ORTHO05D006886 1.1e-76 291.2 282 53.9
arahy.Tifrunner.gnm1.ann1.70CJD0 Arachis hypogaea HOM05D005476 ORTHO05D006886 7.3e-76 288.5 233 63.1
Zm00001eb056490 Zea mays HOM05D005476 ORTHO05D006886 1.8e-74 283.9 292 49.7
CDE02G0680 Ceratophyllum demersum HOM05D005476 ORTHO05D006886 4.0e-74 282.7 287 49.8
Mapoly0060s0007 Marchantia polymorpha HOM05D005476 ORTHO05D006886 4.4e-65 252.7 287 44.6
SEGI_26423 Sequoiadendron giganteum HOM05D005476 ORTHO05D006886 9.9e-65 251.5 284 45.1
Pp3c1_3930 Physcomitrium patens HOM05D005476 ORTHO05D006886 4.2e-63 246.1 294 43.2
AagrBONN_evm.TU.Sc2ySwM_362.363 Anthoceros agrestis HOM05D005476 ORTHO05D006886 3.5e-62 243.0 274 46.4
AL1010U10010 Arabidopsis lyrata HOM05D005476 ORTHO05D006886 2.3e-61 240.4 198 62.6
Oeu000377.2 Olea europaea HOM05D005476 ORTHO05D006886 5.1e-61 239.2 264 49.6
SMO329G0019 Selaginella moellendorffii HOM05D005476 ORTHO05D006886 1.6e-59 234.2 266 45.1
Pp3c7_18020 Physcomitrium patens HOM05D005476 ORTHO05D006886 3.1e-58 229.9 286 42.3
CBR_g23861 Chara braunii HOM05D005476 ORTHO05D006886 2.6e-57 226.9 304 42.1
Gohir.D05G089750 Gossypium hirsutum HOM05D005476 ORTHO05D006886 5.6e-52 209.1 163 62.0
A03p12050 Brassica napus HOM05D005476 ORTHO05D006886 3.1e-34 150.2 173 46.2
RcHm_v2.0_Chr6g0276161 Rosa chinensis HOM05D005476 ORTHO05D006886 1.3e-29 134.8 132 52.3
RcHm_v2.0_Chr7g0201761 Rosa chinensis HOM05D005476 ORTHO05D006886 2.4e-26 124.0 132 50.8
HanXRQChr16g0507541 Helianthus annuus HOM05D005476 ORTHO05D006886 7.2e-23 112.5 113 50.4
arahy.Tifrunner.gnm1.ann1.Y3WSKM Arachis hypogaea HOM05D005476 ORTHO05D006886 6.1e-22 109.4 102 54.9
SalBow8G2493 Salvia bowleyana HOM05D005476 ORTHO05D006886 1.5e-20 104.8 169 40.2
RcHm_v2.0_Chr7g0242751 Rosa chinensis HOM05D005476 ORTHO05D006886 3.4e-17 93.6 87 56.3
BraA03t10517Z Brassica rapa HOM05D005476 ORTHO05D006886 8.5e-16 89.0 104 44.2
C03p15890 Brassica napus HOM05D000062 ORTHO05D021669 1.1e-12 78.6 120 40.0
BolC3t14020H Brassica oleracea HOM05D000062 ORTHO05D006886 1.1e-12 78.6 120 40.0
Actinidia23243 Actinidia chinensis HOM05D005476 ORTHO05D006886 1.7e-11 74.7 62 61.3
Pp3c11_9540 Physcomitrium patens HOM05D005476 ORTHO05D006886 5.3e-10 69.7 120 35.8
SalBow5G5594 Salvia bowleyana HOM05D005476 ORTHO05D006886 1.7e-08 64.7 71 45.1
RcHm_v2.0_Chr6g0303391 Rosa chinensis HOM05D005476 ORTHO05D006886 3.8e-08 63.5 47 59.6
ATR0691G298 Amborella trichopoda HOM05D000559 ORTHO05D000596 1.6e-06 58.2 122 35.2
MBI03_g28849_MAGBIO Magnolia biondii HOM05D000559 ORTHO05D000596 4.7e-06 56.6 139 32.4


User provided reference genes

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