Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G5778 Trifolium pratense HOM05D005555 ORTHO05D006923 1.5e-192 676.0 345 100.0
TPR.G33802 Trifolium pratense HOM05D005555 ORTHO05D006923 2.1e-165 585.9 349 87.7
Medtr3g052180 Medicago truncatula HOM05D005555 ORTHO05D006923 8.4e-159 563.9 340 85.0
Psat5g178680 Pisum sativum HOM05D005555 ORTHO05D006923 4.2e-158 561.6 340 85.6
Lj6g0008930 Lotus japonicus HOM05D005555 ORTHO05D006923 5.4e-158 561.2 340 85.6
Medtr5g049170 Medicago truncatula HOM05D005555 ORTHO05D006923 3.6e-154 548.5 340 82.9
VMungo0540G1244 Vigna mungo HOM05D005555 ORTHO05D006923 2.2e-151 539.3 340 82.4
arahy.Tifrunner.gnm1.ann1.UR7PB1 Arachis hypogaea HOM05D005555 ORTHO05D006923 1.4e-150 536.6 340 81.2
Lalb_Chr20g0113831 Lupinus albus HOM05D005555 ORTHO05D006923 3.2e-150 535.4 340 81.2
arahy.Tifrunner.gnm1.ann1.P3VUIG Arachis hypogaea HOM05D005555 ORTHO05D006923 5.4e-150 534.6 340 81.5
Glyma.08G316800 Glycine max HOM05D005555 ORTHO05D006923 9.3e-150 533.9 339 81.7
Glyma.18G096300 Glycine max HOM05D005555 ORTHO05D006923 9.3e-150 533.9 339 81.7
arahy.Tifrunner.gnm1.ann1.QY89IE Arachis hypogaea HOM05D005555 ORTHO05D006923 1.6e-149 533.1 340 81.2
Ca_14731_v3 Cicer arietinum L. HOM05D005555 ORTHO05D006923 7.9e-149 530.8 339 82.0
Phvul.006G044000 Phaseolus vulgaris HOM05D005555 ORTHO05D006923 3.9e-148 528.5 340 80.9
QL08p010014 Quercus lobata HOM05D005555 ORTHO05D006923 6.0e-133 478.0 333 73.3
arahy.Tifrunner.gnm1.ann1.GVQ212 Arachis hypogaea HOM05D005555 ORTHO05D006923 5.7e-131 471.5 375 68.5
GSVIVG01037655001 Vitis vinifera HOM05D005555 ORTHO05D006923 2.4e-129 466.1 336 71.7
CSS0046165 Camellia sinensis var. sinensis HOM05D005555 ORTHO05D006923 1.5e-128 463.4 345 70.4
CiPaw.12G130100 Carya illinoinensis HOM05D005555 ORTHO05D006923 6.5e-127 458.0 344 69.8
Gorai.009G438400 Gossypium raimondii HOM05D005555 ORTHO05D006923 6.5e-127 458.0 340 72.1
Eucgr.F03470 Eucalyptus grandis HOM05D005555 ORTHO05D006923 1.4e-126 456.8 337 72.1
Sed0005603 Sechium edule HOM05D005555 ORTHO05D006923 1.9e-126 456.4 343 70.3
Duzib268G1179 Durio zibethinus HOM05D005555 ORTHO05D006923 4.2e-126 455.3 340 72.4
CsaV3_7G021840 Cucumis sativus L. HOM05D005555 ORTHO05D006923 1.6e-125 453.4 343 70.8
Nn1g07133 Nelumbo nucifera HOM05D005555 ORTHO05D006923 1.6e-125 453.4 344 68.6
Dinv22259 Davidia involucrata HOM05D005555 ORTHO05D006923 2.1e-125 453.0 344 68.6
Hund15555 Selenicereus undatus HOM05D005555 ORTHO05D006923 4.6e-125 451.8 339 67.0
MELO3C013162.2 Cucumis melo HOM05D005555 ORTHO05D006923 6.1e-125 451.4 357 68.9
TWI39G0347 Tripterygium wilfordii HOM05D005555 ORTHO05D006923 1.3e-124 450.3 346 69.7
TAR627G0887 Trochodendron aralioides HOM05D005555 ORTHO05D006923 5.7e-123 444.9 337 69.4
CANSAT11G1088 Cannabis sativa HOM05D005555 ORTHO05D006923 9.7e-123 444.1 341 68.6
Gohir.A04G016500 Gossypium hirsutum HOM05D005555 ORTHO05D006923 9.7e-123 444.1 340 70.6
RcHm_v2.0_Chr2g0139231 Rosa chinensis HOM05D005555 ORTHO05D006923 1.3e-122 443.7 343 67.9
Ciclev10008353m.g Citrus clementina HOM05D005555 ORTHO05D006923 3.7e-122 442.2 343 69.7
Migut.M01757 Erythranthe guttata HOM05D005555 ORTHO05D006923 8.2e-122 441.0 344 67.4
THA.LOC104817858 Tarenaya hassleriana HOM05D005555 ORTHO05D006923 1.1e-121 440.7 344 68.9
MSTRG.6923 Avicennia marina HOM05D005555 ORTHO05D006923 3.1e-121 439.1 344 67.7
EL10Ac2g03146 Beta vulgaris HOM05D005555 ORTHO05D006923 6.9e-121 438.0 341 66.6
Manes.15G071400 Manihot esculenta HOM05D005555 ORTHO05D006923 6.9e-121 438.0 337 69.7
HanXRQChr03g0076481 Helianthus annuus HOM05D005555 ORTHO05D006923 9.1e-121 437.6 340 67.6
CiPaw.11G190000 Carya illinoinensis HOM05D005555 ORTHO05D006923 1.2e-120 437.2 342 67.3
Gohir.D05G369700 Gossypium hirsutum HOM05D005555 ORTHO05D006923 1.2e-120 437.2 333 70.3
Gohir.D05G370300 Gossypium hirsutum HOM05D005555 ORTHO05D006923 1.2e-120 437.2 342 69.6
Thecc.07G035900 Theobroma cacao HOM05D005555 ORTHO05D006923 1.2e-120 437.2 340 70.0
Aqoxy1G02148 Aquilegia oxysepala HOM05D005555 ORTHO05D006923 2.9e-119 432.6 344 66.0
CSS0038584 Camellia sinensis var. sinensis HOM05D005555 ORTHO05D006923 2.9e-119 432.6 339 67.6
Prupe.3G065100 Prunus persica HOM05D005555 ORTHO05D006923 6.5e-119 431.4 344 66.9
Cpa.g.sc12.303 Carica papaya HOM05D005555 ORTHO05D006923 8.5e-119 431.0 342 67.8
Lj8C169T24 Lonicera japonica HOM05D005555 ORTHO05D006923 1.1e-118 430.6 378 62.2
Nn1g03520 Nelumbo nucifera HOM05D005555 ORTHO05D006923 1.1e-118 430.6 344 66.0
SGA_v2.0_scaffold172G39000 Striga asiatica HOM05D005555 ORTHO05D006923 1.9e-118 429.9 347 66.0
ECA240G0357 Erigeron canadensis HOM05D005555 ORTHO05D006923 4.6e-117 425.2 333 67.0
Rhsim06G0217300 Rhododendron simsii HOM05D005555 ORTHO05D006923 4.6e-117 425.2 345 64.3
A06p02920 Brassica napus HOM05D005555 ORTHO05D006923 7.9e-117 424.5 342 67.0
BraA06t23497Z Brassica rapa HOM05D005555 ORTHO05D006923 7.9e-117 424.5 342 67.0
Actinidia35345 Actinidia chinensis HOM05D005555 ORTHO05D006923 1.0e-116 424.1 355 64.5
PSO541G4760 Papaver somniferum HOM05D005555 ORTHO05D006923 1.0e-116 424.1 333 69.1
BcaC08g43248 Brassica carinata HOM05D005555 ORTHO05D006923 1.4e-116 423.7 342 66.7
C06p05960 Brassica napus HOM05D005555 ORTHO05D006923 1.4e-116 423.7 342 66.7
BolC6t35709H Brassica oleracea HOM05D005555 ORTHO05D006923 1.4e-116 423.7 342 66.7
FAN14G2902 Fragaria x ananassa HOM05D005555 ORTHO05D006923 5.1e-116 421.8 336 64.9
Cc07_g19690 Coffea canephora HOM05D005555 ORTHO05D006923 6.7e-116 421.4 344 65.4
AL1G58400 Arabidopsis lyrata HOM05D005555 ORTHO05D006923 8.8e-116 421.0 342 65.8
MD09G1208700 Malus domestica HOM05D005555 ORTHO05D006923 1.1e-115 420.6 343 64.7
BcaC08g43250 Brassica carinata HOM05D005555 ORTHO05D006923 2.0e-115 419.9 342 67.0
FAN05G3309 Fragaria x ananassa HOM05D005555 ORTHO05D006923 2.0e-115 419.9 336 64.6
AT1G50710 Arabidopsis thaliana HOM05D005555 ORTHO05D006923 2.6e-115 419.5 342 65.5
Sp1g37550 Schrenkiella parvula HOM05D005555 ORTHO05D006923 2.6e-115 419.5 343 66.2
Carub.0001s3974 Capsella rubella HOM05D005555 ORTHO05D006923 3.3e-115 419.1 342 65.5
Cc05_g13620 Coffea canephora HOM05D005555 ORTHO05D006923 3.3e-115 419.1 344 64.5
Cfa020338 Carpinus fangiana HOM05D005555 ORTHO05D006923 4.4e-115 418.7 344 66.9
ClCG09G010820 Citrullus lanatus HOM05D005555 ORTHO05D006923 7.4e-115 417.9 390 61.0
MD17G1190200 Malus domestica HOM05D005555 ORTHO05D006923 9.7e-115 417.5 335 66.0
Atru.chr2.3417 Acer truncatum HOM05D005555 ORTHO05D006923 2.8e-114 416.0 344 65.7
Solyc12g005050.2 Solanum lycopersicum HOM05D005555 ORTHO05D006923 1.1e-113 414.1 341 66.0
Sopen12g001050 Solanum pennellii HOM05D005555 ORTHO05D006923 3.1e-113 412.5 341 66.0
Nitab4.5_0008473g0010 Nicotiana tabacum HOM05D005555 ORTHO05D006923 4.1e-113 412.1 346 64.7
CARHR040810 Cardamine hirsuta HOM05D005555 ORTHO05D006923 2.0e-112 409.8 342 64.6
PSO675G4173 Papaver somniferum HOM05D005555 ORTHO05D006923 3.4e-112 409.1 333 66.4
Thhalv10011513m.g Eutrema salsugineum HOM05D005555 ORTHO05D006923 5.9e-112 408.3 342 64.9
Ah.10g032310 Amaranthus hybridus HOM05D005555 ORTHO05D006923 2.2e-111 406.4 340 63.8
Aa31LG10G3630 Aethionema arabicum HOM05D005555 ORTHO05D006923 3.8e-111 405.6 344 63.4
Lsat_1_v5_gn_2_47780 Lactuca sativa HOM05D005555 ORTHO05D006923 3.8e-111 405.6 340 64.4
Gorai.009G438500 Gossypium raimondii HOM05D005555 ORTHO05D006923 5.0e-111 405.2 340 65.9
MD03G1200100 Malus domestica HOM05D005555 ORTHO05D006923 4.2e-110 402.1 340 63.2
FAN02G4472 Fragaria x ananassa HOM05D005555 ORTHO05D006923 1.6e-109 400.2 336 62.2
DCAR_016709 Daucus carota HOM05D005555 ORTHO05D006923 3.6e-109 399.1 337 63.8
PGR031G0129 Punica granatum HOM05D005555 ORTHO05D006923 3.6e-109 399.1 348 62.4
PGSC0003DMG400027869 Solanum tuberosum HOM05D005555 ORTHO05D006923 4.7e-109 398.7 346 63.6
BcaB02g11175 Brassica carinata HOM05D005555 ORTHO05D006923 7.9e-109 397.9 342 64.0
Sc03g0008570 Simmondsia chinensis HOM05D005555 ORTHO05D006923 1.4e-108 397.1 293 69.6
CDE04G3207 Ceratophyllum demersum HOM05D005555 ORTHO05D006923 1.8e-108 396.7 342 61.4
Potri.011G090800 Populus trichocarpa HOM05D005555 ORTHO05D006923 1.8e-108 396.7 346 64.2
AUR62018195 Chenopodium quinoa HOM05D005555 ORTHO05D006923 4.4e-107 392.1 340 61.2
BcaB07g33510 Brassica carinata HOM05D005555 ORTHO05D006923 2.2e-106 389.8 343 64.1
CAN.G542.3 Capsicum annuum HOM05D005555 ORTHO05D006923 3.7e-106 389.0 341 62.2
DCAR_001508 Daucus carota HOM05D005555 ORTHO05D006923 1.6e-104 383.6 337 62.9
BraA05t20906Z Brassica rapa HOM05D005555 ORTHO05D006923 7.7e-104 381.3 341 61.9
CSS0007038 Camellia sinensis var. sinensis HOM05D005555 ORTHO05D006923 1.1e-102 377.5 337 62.3
vmacro11723 Vaccinium macrocarpon HOM05D005555 ORTHO05D006923 1.5e-102 377.1 360 57.8
unitig_744.g24404 Utricularia gibba HOM05D005555 ORTHO05D006923 2.5e-102 376.3 340 60.6
A05p19990 Brassica napus HOM05D005555 ORTHO05D006923 4.2e-102 375.6 341 61.9
Nitab4.5_0000981g0050 Nicotiana tabacum HOM05D005555 ORTHO05D006923 1.6e-101 373.6 384 56.2
ATR0752G192 Amborella trichopoda HOM05D005555 ORTHO05D006923 4.7e-101 372.1 339 57.2
Gohir.D05G369900 Gossypium hirsutum HOM05D005555 ORTHO05D006923 6.1e-101 371.7 320 66.6
RcHm_v2.0_Chr5g0039771 Rosa chinensis HOM05D005555 ORTHO05D006923 6.7e-100 368.2 338 57.4
MBI05_g12021_MAGBIO Magnolia biondii HOM05D005555 ORTHO05D006923 2.0e-99 366.7 342 59.6
arahy.Tifrunner.gnm1.ann1.92YVPD Arachis hypogaea HOM05D005555 ORTHO05D006923 9.1e-97 357.8 339 59.0
Medtr5g049150 Medicago truncatula HOM05D005555 ORTHO05D006923 9.1e-97 357.8 217 83.4
Peaxi162Scf00660g00816 Petunia axillaris HOM05D005555 ORTHO05D006923 6.5e-95 351.7 303 64.4
FAN16G3656 Fragaria x ananassa HOM05D005555 ORTHO05D006923 1.9e-94 350.1 338 55.6
FAN25G0297 Fragaria x ananassa HOM05D005555 ORTHO05D006923 9.4e-94 347.8 338 55.0
Sabra11G0086200 Salix brachista HOM05D005555 ORTHO05D006923 2.1e-93 346.7 346 58.1
FvH4_3g22760 Fragaria vesca HOM05D005555 ORTHO05D006923 6.1e-93 345.1 338 54.7
Haze_09680 Corylus avellana HOM05D005555 ORTHO05D006923 3.0e-92 342.8 402 53.2
HanXRQChr05g0134351 Helianthus annuus HOM05D005555 ORTHO05D006923 3.0e-92 342.8 344 57.8
HPP92_010410 Vanilla planifolia HOM05D005555 ORTHO05D006923 4.5e-88 328.9 340 54.4
SMO352G0045 Selaginella moellendorffii HOM05D005555 ORTHO05D006923 4.2e-86 322.4 327 54.4
Sed0020027 Sechium edule HOM05D005555 ORTHO05D006923 9.5e-86 321.2 303 60.1
Dinv40759 Davidia involucrata HOM05D005555 ORTHO05D006923 2.3e-84 316.6 297 62.3
Prupe.4G214200 Prunus persica HOM05D005555 ORTHO05D006923 2.3e-84 316.6 279 62.0
arahy.Tifrunner.gnm1.ann1.21WID0 Arachis hypogaea HOM05D005555 ORTHO05D006923 5.2e-84 315.5 346 53.5
Zm00001eb230170 Zea mays HOM05D005555 ORTHO05D006923 1.2e-80 304.3 331 52.0
Mapoly0032s0110 Marchantia polymorpha HOM05D005555 ORTHO05D006923 1.0e-79 301.2 344 48.0
Pp3c17_11280 Physcomitrium patens HOM05D005555 ORTHO05D006923 2.9e-74 283.1 331 46.8
FvH4_6g31880 Fragaria vesca HOM05D005555 ORTHO05D006923 1.8e-73 280.4 233 65.2
AUR62038682 Chenopodium quinoa HOM05D005555 ORTHO05D006923 4.1e-73 279.3 333 49.2
CBR_g19746 Chara braunii HOM05D005555 ORTHO05D006923 5.4e-41 172.6 303 35.6
Os02g0119100 Oryza sativa ssp. japonica HOM05D005555 ORTHO05D006923 2.5e-38 163.7 207 47.8
CBR_g6714 Chara braunii HOM05D005555 ORTHO05D006923 5.8e-35 152.5 344 32.8
arahy.Tifrunner.gnm1.ann1.C7XXCR Arachis hypogaea HOM05D005555 ORTHO05D082991 8.7e-15 85.5 123 49.6
Actinidia13832 Actinidia chinensis HOM05D005555 ORTHO05D006923 5.7e-06 56.2 53 56.6


User provided reference genes

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