Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G5774 Trifolium pratense HOM05D006922 ORTHO05D008564 1.7e-310 1068.5 561 100.0
Medtr5g070310 Medicago truncatula HOM05D006922 ORTHO05D008564 1.9e-285 985.3 561 88.9
Psat2g058840 Pisum sativum HOM05D006922 ORTHO05D008564 6.3e-265 917.1 557 82.6
Glyma.02G226300 Glycine max HOM05D006922 ORTHO05D008564 1.9e-261 905.6 561 81.6
Glyma.14G193200 Glycine max HOM05D006922 ORTHO05D008564 1.0e-259 899.8 559 82.6
Lalb_Chr17g0345061 Lupinus albus HOM05D006922 ORTHO05D008564 1.8e-256 889.0 560 78.8
Phvul.008G261700 Phaseolus vulgaris HOM05D006922 ORTHO05D008564 1.4e-251 872.8 564 80.9
VMungo0647G1020 Vigna mungo HOM05D006922 ORTHO05D008564 3.1e-251 871.7 556 80.0
arahy.Tifrunner.gnm1.ann1.TP1S59 Arachis hypogaea HOM05D006922 ORTHO05D008564 2.2e-249 865.5 562 76.3
arahy.Tifrunner.gnm1.ann1.GN6H4S Arachis hypogaea HOM05D006922 ORTHO05D008564 7.0e-248 860.5 569 74.5
QL01p038111 Quercus lobata HOM05D006922 ORTHO05D008564 8.3e-241 837.0 560 73.4
LjContig00155g0013001 Lotus japonicus HOM05D006922 ORTHO05D008564 1.4e-240 836.3 561 79.3
CiPaw.13G078100 Carya illinoinensis HOM05D006922 ORTHO05D008564 7.8e-239 830.5 571 74.8
Ca_05595_v3 Cicer arietinum L. HOM05D006922 ORTHO05D008564 8.1e-236 820.5 561 79.3
TWI75G0327 Tripterygium wilfordii HOM05D006922 ORTHO05D008564 3.1e-235 818.5 558 74.4
CSS0043924 Camellia sinensis var. sinensis HOM05D006922 ORTHO05D008564 2.3e-230 802.4 565 71.9
Cfa011691 Carpinus fangiana HOM05D006922 ORTHO05D008564 6.6e-230 800.8 562 72.6
TAR636G2664 Trochodendron aralioides HOM05D006922 ORTHO05D008564 6.6e-230 800.8 562 70.6
Manes.02G119900 Manihot esculenta HOM05D006922 ORTHO05D008564 4.7e-228 794.7 564 72.3
Ciclev10028135m.g Citrus clementina HOM05D006922 ORTHO05D008564 3.1e-227 792.0 552 69.7
Thecc.09G302300 Theobroma cacao HOM05D006922 ORTHO05D008564 5.2e-227 791.2 562 72.1
Haze_24310 Corylus avellana HOM05D006922 ORTHO05D008564 2.6e-226 788.9 632 66.8
Haze_24317 Corylus avellana HOM05D006922 ORTHO05D008564 2.6e-226 788.9 632 66.8
GSVIVG01024745001 Vitis vinifera HOM05D006922 ORTHO05D008564 1.7e-225 786.2 563 71.0
Rhsim13G0069900 Rhododendron simsii HOM05D006922 ORTHO05D008564 6.4e-225 784.3 562 70.5
Gohir.A13G224600 Gossypium hirsutum HOM05D006922 ORTHO05D008564 1.9e-224 782.7 559 69.2
Atru.chr3.4225 Acer truncatum HOM05D006922 ORTHO05D008564 9.3e-224 780.4 530 74.5
MD11G1075200 Malus domestica HOM05D006922 ORTHO05D008564 1.6e-223 779.6 561 69.7
Gorai.013G260300 Gossypium raimondii HOM05D006922 ORTHO05D008564 3.5e-223 778.5 559 68.9
PGR102G2313 Punica granatum HOM05D006922 ORTHO05D008564 4.6e-223 778.1 561 70.1
Lsat_1_v5_gn_5_171361 Lactuca sativa HOM05D006922 ORTHO05D008564 6.0e-223 777.7 520 74.0
vmacro02966 Vaccinium macrocarpon HOM05D006922 ORTHO05D008564 1.3e-222 776.5 532 73.3
Gohir.D13G229600 Gossypium hirsutum HOM05D006922 ORTHO05D008564 2.3e-222 775.8 557 68.8
Potri.001G251000 Populus trichocarpa HOM05D006922 ORTHO05D008564 2.3e-222 775.8 565 70.6
ClCG02G019570 Citrullus lanatus HOM05D006922 ORTHO05D008564 3.0e-222 775.4 520 73.1
CsaV3_6G016240 Cucumis sativus L. HOM05D006922 ORTHO05D008564 3.0e-222 775.4 518 74.1
Sed0026257 Sechium edule HOM05D006922 ORTHO05D008564 1.6e-220 769.6 563 68.7
Cpa.g.sc112.28 Carica papaya HOM05D006922 ORTHO05D008564 8.1e-220 767.3 574 67.4
CANSAT54G2041 Cannabis sativa HOM05D006922 ORTHO05D008564 2.4e-219 765.8 551 70.6
Aqoxy4G02590 Aquilegia oxysepala HOM05D006922 ORTHO05D008564 3.1e-219 765.4 557 68.8
Nn2g13696 Nelumbo nucifera HOM05D006922 ORTHO05D008564 3.1e-219 765.4 539 69.8
Actinidia25162 Actinidia chinensis HOM05D006922 ORTHO05D008564 5.3e-219 764.6 518 68.7
Cc01_g14160 Coffea canephora HOM05D006922 ORTHO05D008564 1.2e-218 763.5 547 71.8
Duzib170G0653 Durio zibethinus HOM05D006922 ORTHO05D008564 1.5e-218 763.1 563 68.9
FvH4_3g38500 Fragaria vesca HOM05D006922 ORTHO05D008564 2.9e-217 758.8 562 68.7
VMungo1080G0717 Vigna mungo HOM05D006922 ORTHO05D008564 6.4e-217 757.7 483 76.4
Eucgr.B02258 Eucalyptus grandis HOM05D006922 ORTHO05D008564 9.3e-216 753.8 553 71.2
RcHm_v2.0_Chr5g0069361 Rosa chinensis HOM05D006922 ORTHO05D008564 1.2e-215 753.4 517 72.3
ECA248G0600 Erigeron canadensis HOM05D006922 ORTHO05D008564 3.5e-215 751.9 533 67.7
HanXRQChr01g0011191 Helianthus annuus HOM05D006922 ORTHO05D008564 4.6e-215 751.5 526 67.3
PSO384G3055 Papaver somniferum HOM05D006922 ORTHO05D008564 4.8e-212 741.5 535 67.7
FAN25G0993 Fragaria x ananassa HOM05D006922 ORTHO05D008564 6.2e-212 741.1 583 65.9
PSO339G4985 Papaver somniferum HOM05D006922 ORTHO05D008564 1.4e-211 740.0 535 69.3
Hund18850 Selenicereus undatus HOM05D006922 ORTHO05D008564 3.1e-211 738.8 554 64.3
Sabra16G0152600 Salix brachista HOM05D006922 ORTHO05D008564 1.2e-210 736.9 561 68.1
Ah.08g221140 Amaranthus hybridus HOM05D006922 ORTHO05D008564 1.9e-208 729.6 549 68.7
Nitab4.5_0006472g0010 Nicotiana tabacum HOM05D006922 ORTHO05D008564 2.1e-207 726.1 564 65.2
Dinv14441 Davidia involucrata HOM05D006922 ORTHO05D008564 3.5e-207 725.3 561 65.8
Sopen09g014130 Solanum pennellii HOM05D006922 ORTHO05D008564 2.5e-205 719.2 548 64.1
Solyc09g031610.4 Solanum lycopersicum HOM05D006922 ORTHO05D008564 5.6e-205 718.0 556 62.4
THA.LOC104814912 Tarenaya hassleriana HOM05D006922 ORTHO05D008564 4.8e-204 714.9 509 68.2
SGA_v2.0_scaffold146G36139 Striga asiatica HOM05D006922 ORTHO05D008564 1.1e-203 713.8 558 63.1
Migut.N00796 Erythranthe guttata HOM05D006922 ORTHO05D008564 2.4e-203 712.6 558 65.8
ATR0618G165 Amborella trichopoda HOM05D006922 ORTHO05D008564 1.0e-201 707.2 485 68.7
MSTRG.17876 Avicennia marina HOM05D006922 ORTHO05D008564 1.3e-201 706.8 550 64.4
EL10Ac7g16162 Beta vulgaris HOM05D006922 ORTHO05D008564 7.4e-197 691.0 561 61.9
Sc12g0000700 Simmondsia chinensis HOM05D006922 ORTHO05D008564 9.6e-197 690.6 438 72.1
Nitab4.5_0021689g0010 Nicotiana tabacum HOM05D006922 ORTHO05D008564 1.1e-195 687.2 658 56.7
Carub.0008s1938 Capsella rubella HOM05D006922 ORTHO05D008564 1.4e-195 686.8 499 69.3
Oeu056142.1 Olea europaea HOM05D006922 ORTHO05D008564 6.9e-195 684.5 491 70.3
FAN21G2294 Fragaria x ananassa HOM05D006922 ORTHO05D008564 4.5e-194 681.8 587 62.2
MELO3C025853.2 Cucumis melo HOM05D006922 ORTHO05D008564 1.0e-193 680.6 418 76.1
Peaxi162Scf00116g00214 Petunia axillaris HOM05D006922 ORTHO05D008564 1.3e-193 680.2 578 62.5
CDE04G0365 Ceratophyllum demersum HOM05D006922 ORTHO05D008564 1.7e-193 679.9 488 65.0
DCAR_007371 Daucus carota HOM05D006922 ORTHO05D008564 1.7e-193 679.9 445 71.0
Sp6g20450 Schrenkiella parvula HOM05D006922 ORTHO05D008564 1.6e-191 673.3 556 59.5
Lj2A1081T41 Lonicera japonica HOM05D006922 ORTHO05D008564 3.6e-191 672.2 498 70.7
Os01g0141700 Oryza sativa ssp. japonica HOM05D006922 ORTHO05D008564 8.7e-190 667.5 447 67.8
Aa31LG11G520 Aethionema arabicum HOM05D006922 ORTHO05D008564 1.9e-189 666.4 489 64.4
AUR62020125 Chenopodium quinoa HOM05D006922 ORTHO05D008564 1.6e-188 663.3 563 59.1
HPP92_019886 Vanilla planifolia HOM05D006922 ORTHO05D008564 2.2e-185 652.9 482 62.4
Thhalv10013126m.g Eutrema salsugineum HOM05D006922 ORTHO05D008564 1.2e-183 647.1 559 59.4
AUR62001652 Chenopodium quinoa HOM05D006922 ORTHO05D008564 2.1e-183 646.4 565 60.0
AT5G58760 Arabidopsis thaliana HOM05D006922 ORTHO05D008564 6.7e-182 641.3 502 66.3
AL8G35040 Arabidopsis lyrata HOM05D006922 ORTHO05D008564 3.3e-181 639.0 500 64.6
CARHR272670 Cardamine hirsuta HOM05D006922 ORTHO05D008564 8.2e-180 634.4 500 65.4
C02p13110 Brassica napus HOM05D006922 ORTHO05D008564 1.8e-179 633.3 449 66.1
BolC2t07428H Brassica oleracea HOM05D006922 ORTHO05D008564 1.8e-179 633.3 449 66.1
A02p07550 Brassica napus HOM05D006922 ORTHO05D008564 2.4e-179 632.9 451 65.9
SHI19141 Sapria himalayana HOM05D006922 ORTHO05D008564 2.4e-179 632.9 561 57.2
BraA02t05832Z Brassica rapa HOM05D006922 ORTHO05D008564 4.5e-178 628.6 451 65.4
BcaC03g14075 Brassica carinata HOM05D006922 ORTHO05D008564 2.2e-177 626.3 433 67.0
BcaB05g22449 Brassica carinata HOM05D006922 ORTHO05D008564 2.5e-176 622.9 434 66.6
Prupe.6G058000 Prunus persica HOM05D006922 ORTHO05D008564 7.9e-175 617.8 561 58.6
Zm00001eb335650 Zea mays HOM05D006922 ORTHO05D008564 3.9e-174 615.5 440 67.5
AagrBONN_evm.TU.Sc2ySwM_344.796 Anthoceros agrestis HOM05D006922 ORTHO05D008564 7.7e-162 574.7 469 58.4
CBR_g22343 Chara braunii HOM05D006922 ORTHO05D008564 2.0e-154 550.1 505 53.9
SMO200G0225 Selaginella moellendorffii HOM05D006922 ORTHO05D008564 5.0e-153 545.4 493 52.3
FAN11G1737 Fragaria x ananassa HOM05D006922 ORTHO05D008564 3.0e-150 536.2 372 69.9
Pp3c8_16660 Physcomitrium patens HOM05D006922 ORTHO05D008564 1.6e-146 523.9 464 54.1
unitig_0.g440 Utricularia gibba HOM05D006922 ORTHO05D008564 5.6e-144 515.4 558 51.8
HPP92_019877 Vanilla planifolia HOM05D006922 ORTHO05D008564 4.1e-131 472.6 476 51.3
FAN16G0983 Fragaria x ananassa HOM05D006922 ORTHO05D008564 1.5e-93 347.8 266 66.5
Hma1.2p1_0227F.1_g096470 Hydrangea macrophylla HOM05D006922 ORTHO05D008564 8.7e-73 278.9 162 79.0
COL.COLO4_19151 Corchorus olitorius HOM05D006922 ORTHO05D008564 1.6e-58 231.5 300 44.3
SEGI_07058 Sequoiadendron giganteum HOM05D006922 ORTHO05D008564 5.0e-52 209.9 141 64.5
Cre13.g577550 Chlamydomonas reinhardtii HOM05D006922 ORTHO05D008564 9.4e-51 205.7 460 31.1
FAN21G0821 Fragaria x ananassa HOM05D006922 ORTHO05D008564 2.7e-42 177.6 105 75.2
CAN.G3.37 Capsicum annuum HOM05D006922 ORTHO05D008564 1.1e-35 155.6 250 38.8
PGSC0003DMG400022078 Solanum tuberosum HOM05D006922 ORTHO05D008564 9.5e-35 152.5 140 58.6
Actinidia16090 Actinidia chinensis HOM05D006922 ORTHO05D008564 2.0e-32 144.8 94 69.1
Actinidia23246 Actinidia chinensis HOM05D006922 ORTHO05D008564 3.4e-32 144.1 124 56.5
Zm00001eb098530 Zea mays HOM05D008428 ORTHO05D010743 2.8e-31 141.0 103 68.0
Zm00001eb204440 Zea mays HOM05D008428 ORTHO05D010743 2.8e-31 141.0 109 65.1
Zm00001eb302770 Zea mays HOM05D008428 ORTHO05D010743 2.4e-30 137.9 109 64.2
Actinidia25165 Actinidia chinensis HOM05D006922 ORTHO05D008564 1.5e-24 118.6 95 58.9
Actinidia16091 Actinidia chinensis HOM05D006922 ORTHO05D008564 7.0e-22 109.8 61 78.7
CDE02G4620 Ceratophyllum demersum HOM05D006922 ORTHO05D008564 4.1e-14 84.0 198 33.3
Actinidia14201 Actinidia chinensis HOM05D000103 ORTHO05D000049 1.2e-13 82.4 73 56.2
Actinidia04270 Actinidia chinensis HOM05D004232 ORTHO05D004909 2.7e-13 81.3 335 24.5
Ah.06g190350 Amaranthus hybridus HOM05D004232 ORTHO05D001990 1.0e-12 79.3 321 23.4
Actinidia04264 Actinidia chinensis HOM05D004232 ORTHO05D004909 1.3e-12 79.0 310 25.8
MD15G1157400 Malus domestica HOM05D004232 ORTHO05D004909 3.0e-12 77.8 332 21.4
HPP92_023808 Vanilla planifolia HOM05D004232 ORTHO05D004909 1.2e-10 72.4 343 25.1
BcaC04g22248 Brassica carinata HOM05D004232 ORTHO05D004909 2.1e-10 71.6 345 22.9
CSS0000460 Camellia sinensis var. sinensis HOM05D004232 ORTHO05D004909 6.2e-10 70.1 203 26.6
MD02G1011700 Malus domestica HOM05D004232 ORTHO05D004909 8.1e-10 69.7 332 21.1
Lsat_1_v5_gn_3_57841 Lactuca sativa HOM05D003404 ORTHO05D004052 1.8e-09 68.6 48 56.2
unitig_52.g17569 Utricularia gibba HOM05D004232 ORTHO05D004909 4.0e-09 67.4 272 25.0
ECA234G1449 Erigeron canadensis HOM05D004232 ORTHO05D004909 2.6e-08 64.7 204 24.5
Migut.K00358 Erythranthe guttata HOM05D004232 ORTHO05D004909 3.4e-08 64.3 210 24.8
Lsat_1_v5_gn_8_77581 Lactuca sativa HOM05D004232 ORTHO05D004909 1.3e-07 62.4 335 20.0
Hund21619 Selenicereus undatus HOM05D004232 ORTHO05D004909 2.2e-07 61.6 260 23.1
Nitab4.5_0011109g0010 Nicotiana tabacum HOM05D004232 ORTHO05D004909 2.9e-07 61.2 208 23.1
COL.COLO4_17524 Corchorus olitorius HOM05D004232 ORTHO05D004909 3.7e-07 60.8 211 22.3
Nitab4.5_0000059g0500 Nicotiana tabacum HOM05D004232 ORTHO05D004909 3.7e-07 60.8 209 25.4
Peaxi162Scf00113g00410 Petunia axillaris HOM05D004232 ORTHO05D004909 6.4e-07 60.1 257 24.5
Actinidia14207 Actinidia chinensis HOM05D000103 ORTHO05D008564 4.1e-06 57.4 66 50.0
MCO15G626 Micromonas commoda HOM05D001978 ORTHO05D003036 7.1e-06 56.6 184 26.6
Os03g0286800 Oryza sativa ssp. japonica HOM05D002236 ORTHO05D002341 7.1e-06 56.6 195 26.2


User provided reference genes

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