Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G5760 Trifolium pratense HOM05D004553 ORTHO05D005426 3.2e-166 588.6 348 100.0
TPR.G18834 Trifolium pratense HOM05D004553 ORTHO05D005426 2.5e-158 562.4 306 96.4
Medtr7g096510 Medicago truncatula HOM05D004553 ORTHO05D005426 8.2e-154 547.4 306 93.1
Psat3g059120 Pisum sativum HOM05D004553 ORTHO05D005426 7.9e-141 504.2 304 88.8
Ca_02526_v3 Cicer arietinum L. HOM05D004553 ORTHO05D005426 8.8e-140 500.7 307 87.3
Psat0s2295g0120 Pisum sativum HOM05D004553 ORTHO05D005426 9.4e-134 480.7 304 85.5
Phvul.001G159000 Phaseolus vulgaris HOM05D004553 ORTHO05D005426 3.0e-132 475.7 306 83.0
Gohir.D07G217100 Gossypium hirsutum HOM05D004553 ORTHO05D005426 1.1e-131 473.8 306 81.7
Glyma.03G161100 Glycine max HOM05D004553 ORTHO05D005426 1.5e-131 473.4 302 83.1
Gohir.A07G211100 Gossypium hirsutum HOM05D004553 ORTHO05D005426 4.4e-131 471.9 306 81.4
Gorai.001G251500 Gossypium raimondii HOM05D004553 ORTHO05D005426 9.7e-131 470.7 306 81.4
arahy.Tifrunner.gnm1.ann1.9FA7V6 Arachis hypogaea HOM05D004553 ORTHO05D005426 1.2e-128 463.8 306 80.4
Cfa002394 Carpinus fangiana HOM05D004553 ORTHO05D005426 7.7e-128 461.1 306 80.1
HanXRQChr10g0281111 Helianthus annuus HOM05D004553 ORTHO05D005426 8.5e-127 457.6 300 79.0
Ciclev10021217m.g Citrus clementina HOM05D004553 ORTHO05D005426 1.9e-126 456.4 304 78.9
Haze_24589 Corylus avellana HOM05D004553 ORTHO05D005426 1.9e-126 456.4 306 79.7
Haze_24593 Corylus avellana HOM05D004553 ORTHO05D005426 1.9e-126 456.4 306 79.7
VMungo1383G1775 Vigna mungo HOM05D004553 ORTHO05D005426 4.2e-126 455.3 295 82.0
Lalb_Chr20g0107851 Lupinus albus HOM05D004553 ORTHO05D005426 5.5e-126 454.9 301 79.4
Prupe.8G227700 Prunus persica HOM05D004553 ORTHO05D005426 7.2e-126 454.5 306 80.4
MD10G1187900 Malus domestica HOM05D004553 ORTHO05D005426 1.6e-125 453.4 308 79.5
MD05G1201100 Malus domestica HOM05D004553 ORTHO05D005426 1.0e-124 450.7 306 80.4
Actinidia21228 Actinidia chinensis HOM05D004553 ORTHO05D005426 2.0e-123 446.4 304 78.0
Hma1.2p1_0273F.1_g109950 Hydrangea macrophylla HOM05D004553 ORTHO05D005426 2.0e-123 446.4 302 79.5
COL.COLO4_05596 Corchorus olitorius HOM05D004553 ORTHO05D005426 4.4e-123 445.3 291 80.8
PGR044G0761 Punica granatum HOM05D004553 ORTHO05D005426 7.5e-123 444.5 306 76.5
Dinv34597 Davidia involucrata HOM05D004553 ORTHO05D005426 1.3e-122 443.7 304 78.6
MBI17_g17502_MAGBIO Magnolia biondii HOM05D004553 ORTHO05D005426 1.7e-122 443.4 306 76.5
arahy.Tifrunner.gnm1.ann1.1I5KFR Arachis hypogaea HOM05D004553 ORTHO05D005426 2.8e-122 442.6 306 77.1
Nn3g19599 Nelumbo nucifera HOM05D004553 ORTHO05D005426 2.8e-122 442.6 302 76.8
Migut.D00406 Erythranthe guttata HOM05D004553 ORTHO05D005426 3.7e-122 442.2 304 76.3
arahy.Tifrunner.gnm1.ann1.6P10V3 Arachis hypogaea HOM05D004553 ORTHO05D005426 6.3e-122 441.4 306 76.8
AUR62011903 Chenopodium quinoa HOM05D004553 ORTHO05D005426 6.3e-122 441.4 304 75.3
Actinidia23392 Actinidia chinensis HOM05D004553 ORTHO05D005426 8.3e-122 441.0 304 77.3
arahy.Tifrunner.gnm1.ann1.59X69N Arachis hypogaea HOM05D004553 ORTHO05D005426 1.4e-121 440.3 306 77.1
Potri.002G041400 Populus trichocarpa HOM05D004553 ORTHO05D005426 2.4e-121 439.5 303 75.6
Sed0016387 Sechium edule HOM05D004553 ORTHO05D005426 3.1e-121 439.1 306 75.2
Duzib138G1605 Durio zibethinus HOM05D004553 ORTHO05D005426 5.4e-121 438.3 302 77.5
AUR62024744 Chenopodium quinoa HOM05D004553 ORTHO05D005426 9.1e-121 437.6 304 75.0
MELO3C012740.2 Cucumis melo HOM05D004553 ORTHO05D005426 9.1e-121 437.6 306 75.2
GSVIVG01028297001 Vitis vinifera HOM05D004553 ORTHO05D005426 9.1e-121 437.6 306 75.8
ClCG09G008080 Citrullus lanatus HOM05D004553 ORTHO05D005426 2.0e-120 436.4 306 75.2
Nitab4.5_0000500g0290 Nicotiana tabacum HOM05D004553 ORTHO05D005426 2.0e-120 436.4 302 77.2
Sed0015397 Sechium edule HOM05D004553 ORTHO05D005426 2.0e-120 436.4 306 75.8
TAR365G0062 Trochodendron aralioides HOM05D004553 ORTHO05D005426 3.5e-120 435.6 295 78.3
CsaV3_7G026990 Cucumis sativus L. HOM05D004553 ORTHO05D005426 4.5e-120 435.3 306 75.2
Atru.chr5.1915 Acer truncatum HOM05D004553 ORTHO05D005426 7.7e-120 434.5 304 76.0
Ah.02g111810 Amaranthus hybridus HOM05D004553 ORTHO05D005426 2.2e-119 433.0 303 74.6
CAN.G572.12 Capsicum annuum HOM05D004553 ORTHO05D005426 3.8e-119 432.2 304 76.6
Nitab4.5_0009451g0050 Nicotiana tabacum HOM05D004553 ORTHO05D005426 8.5e-119 431.0 304 76.6
Potri.005G221700 Populus trichocarpa HOM05D004553 ORTHO05D005426 1.1e-118 430.6 303 76.2
Nitab4.5_0001839g0070 Nicotiana tabacum HOM05D004553 ORTHO05D005426 1.5e-118 430.3 304 76.0
Solyc08g077830.1 Solanum lycopersicum HOM05D004553 ORTHO05D005426 3.2e-118 429.1 302 75.8
PGSC0003DMG400026216 Solanum tuberosum HOM05D004553 ORTHO05D005426 5.5e-118 428.3 302 76.5
QL09p037745 Quercus lobata HOM05D004553 ORTHO05D005426 1.2e-117 427.2 305 74.4
Sopen08g026340 Solanum pennellii HOM05D004553 ORTHO05D005426 4.7e-117 425.2 302 75.2
Peaxi162Scf00324g00032 Petunia axillaris HOM05D004553 ORTHO05D005426 1.8e-116 423.3 302 75.5
Rhsim01G0266400 Rhododendron simsii HOM05D004553 ORTHO05D005426 5.2e-116 421.8 295 76.9
SGA_v2.0_scaffold31G12652 Striga asiatica HOM05D004553 ORTHO05D005426 2.0e-115 419.9 314 73.2
Aqoxy5G00280 Aquilegia oxysepala HOM05D004553 ORTHO05D005426 4.4e-115 418.7 306 71.9
CANSAT21G2336 Cannabis sativa HOM05D004553 ORTHO05D005426 4.4e-115 418.7 304 74.0
Manes.05G087500 Manihot esculenta HOM05D004553 ORTHO05D005426 2.8e-114 416.0 302 73.2
EL10Ac5g10427 Beta vulgaris HOM05D004553 ORTHO05D005426 3.7e-114 415.6 303 72.9
Cc03_g10870 Coffea canephora HOM05D004553 ORTHO05D005426 4.9e-114 415.2 304 74.0
Lsat_1_v5_gn_9_9101 Lactuca sativa HOM05D004553 ORTHO05D005426 6.3e-114 414.8 300 73.3
CiPaw.03G261300 Carya illinoinensis HOM05D004553 ORTHO05D005426 1.1e-113 414.1 302 74.8
Hund09587 Selenicereus undatus HOM05D004553 ORTHO05D005426 2.4e-113 412.9 303 72.6
Os12g0626100 Oryza sativa ssp. japonica HOM05D004553 ORTHO05D005426 9.2e-113 411.0 302 71.9
Sabra02G0033000 Salix brachista HOM05D004553 ORTHO05D005426 2.7e-112 409.5 303 71.6
MSTRG.3646 Avicennia marina HOM05D004553 ORTHO05D005426 3.5e-112 409.1 302 72.8
Cpa.g.sc50.47 Carica papaya HOM05D004553 ORTHO05D005426 4.5e-112 408.7 303 71.6
PSO675G7515 Papaver somniferum HOM05D004553 ORTHO05D005426 1.3e-111 407.1 304 72.0
vmacro03822 Vaccinium macrocarpon HOM05D004553 ORTHO05D005426 6.6e-111 404.8 319 69.9
DCAR_012530 Daucus carota HOM05D004553 ORTHO05D005426 1.9e-110 403.3 304 70.1
TAR636G3311 Trochodendron aralioides HOM05D004553 ORTHO05D005426 5.6e-110 401.7 297 73.1
Eucgr.K03287 Eucalyptus grandis HOM05D004553 ORTHO05D005426 7.3e-110 401.4 306 69.6
AT3G58180 Arabidopsis thaliana HOM05D004553 ORTHO05D005426 1.2e-109 400.6 303 71.0
RcHm_v2.0_Chr6g0288871 Rosa chinensis HOM05D004553 ORTHO05D005426 2.1e-109 399.8 306 71.6
Lj1A269G34 Lonicera japonica HOM05D004553 ORTHO05D005426 1.0e-108 397.5 297 72.1
THA.LOC104802841 Tarenaya hassleriana HOM05D004553 ORTHO05D005426 1.4e-108 397.1 305 70.5
Aa31LG10G12900 Aethionema arabicum HOM05D004553 ORTHO05D005426 4.0e-108 395.6 308 69.5
Sp5g04540 Schrenkiella parvula HOM05D004553 ORTHO05D005426 4.0e-108 395.6 306 70.3
BcaC07g40188 Brassica carinata HOM05D004553 ORTHO05D005426 5.2e-108 395.2 305 68.9
TWI12G0019 Tripterygium wilfordii HOM05D004553 ORTHO05D005426 8.9e-108 394.4 291 72.9
A09p50940 Brassica napus HOM05D004553 ORTHO05D005426 1.2e-107 394.0 306 69.6
BraA09t40540Z Brassica rapa HOM05D004553 ORTHO05D005426 1.2e-107 394.0 306 69.6
Carub.0005s2503 Capsella rubella HOM05D004553 ORTHO05D005426 1.2e-107 394.0 302 69.2
FvH4_2g22010 Fragaria vesca HOM05D004553 ORTHO05D005426 2.6e-107 392.9 306 71.2
FAN20G1146 Fragaria x ananassa HOM05D004553 ORTHO05D005426 4.4e-107 392.1 304 71.1
BcaC07g40268 Brassica carinata HOM05D004553 ORTHO05D005426 5.7e-107 391.7 305 68.9
Oeu025823.1 Olea europaea HOM05D004553 ORTHO05D005426 5.7e-107 391.7 302 69.5
BcaB02g07544 Brassica carinata HOM05D004553 ORTHO05D005426 1.7e-106 390.2 307 69.4
BolC8t50975H Brassica oleracea HOM05D004553 ORTHO05D005426 2.9e-106 389.4 306 69.0
Os12g0163300 Oryza sativa ssp. japonica HOM05D004553 ORTHO05D005426 4.9e-106 388.7 300 69.3
DCAR_009311 Daucus carota HOM05D004553 ORTHO05D005426 1.1e-105 387.5 295 70.2
FAN27G3448 Fragaria x ananassa HOM05D004553 ORTHO05D005426 1.8e-105 386.7 295 72.5
FAN15G2654 Fragaria x ananassa HOM05D004553 ORTHO05D005426 2.4e-105 386.3 313 69.3
FAN24G1077 Fragaria x ananassa HOM05D004553 ORTHO05D005426 3.2e-105 386.0 313 69.6
TWI18G0975 Tripterygium wilfordii HOM05D004553 ORTHO05D005426 3.2e-105 386.0 290 73.1
AL5G39880 Arabidopsis lyrata HOM05D004553 ORTHO05D005426 3.5e-104 382.5 303 69.6
Thhalv10006107m.g Eutrema salsugineum HOM05D004553 ORTHO05D005426 5.9e-104 381.7 306 69.6
PSO541G5588 Papaver somniferum HOM05D004553 ORTHO05D005426 1.0e-103 380.9 304 68.1
C08p33760 Brassica napus HOM05D004553 ORTHO05D005426 5.0e-103 378.6 306 68.3
ATR0794G102 Amborella trichopoda HOM05D004553 ORTHO05D005426 1.1e-102 377.5 302 67.9
PSO832G2284 Papaver somniferum HOM05D004553 ORTHO05D005426 4.3e-102 375.6 304 67.4
BcaC08g44904 Brassica carinata HOM05D004553 ORTHO05D005426 5.6e-102 375.2 303 67.3
SalBow6G2244 Salvia bowleyana HOM05D004553 ORTHO05D005426 1.8e-100 370.2 300 68.3
Thecc.01G262600 Theobroma cacao HOM05D004553 ORTHO05D005426 8.9e-100 367.9 244 78.3
BolC6t37683H Brassica oleracea HOM05D004553 ORTHO05D005426 2.0e-99 366.7 294 68.4
unitig_8.g3887 Utricularia gibba HOM05D004553 ORTHO05D005426 5.8e-99 365.2 302 65.6
A07p23970 Brassica napus HOM05D004553 ORTHO05D005426 4.9e-98 362.1 296 68.6
BraA07t30048Z Brassica rapa HOM05D004553 ORTHO05D005426 6.4e-98 361.7 294 69.0
Zm00001eb259150 Zea mays HOM05D004553 ORTHO05D005426 2.4e-97 359.8 304 65.5
C06p25240 Brassica napus HOM05D004553 ORTHO05D005426 3.5e-96 355.9 294 67.7
ECA247G2484 Erigeron canadensis HOM05D004553 ORTHO05D005426 2.1e-93 346.7 240 75.0
HPP92_007745 Vanilla planifolia HOM05D004553 ORTHO05D005426 3.4e-91 339.3 311 61.7
vmacro06125 Vaccinium macrocarpon HOM05D004553 ORTHO05D005426 2.1e-85 320.1 310 60.6
vmacro02641 Vaccinium macrocarpon HOM05D004553 ORTHO05D005426 4.4e-83 312.4 300 60.0
Sc05g0000780 Simmondsia chinensis HOM05D004553 ORTHO05D005426 6.6e-79 298.5 214 72.9
Psat2g052960 Pisum sativum HOM05D004553 ORTHO05D005426 3.4e-75 286.2 197 80.2
Glyma.19G162800 Glycine max HOM05D001448 ORTHO05D005781 1.9e-70 270.4 216 72.7
AagrBONN_evm.TU.Sc2ySwM_228.3863 Anthoceros agrestis HOM05D004553 ORTHO05D005426 8.1e-69 265.0 299 52.8
AagrBONN_evm.TU.Sc2ySwM_117.1472 Anthoceros agrestis HOM05D004553 ORTHO05D005426 2.4e-68 263.5 300 52.0
Pp3c11_17490 Physcomitrium patens HOM05D004553 ORTHO05D005426 3.9e-63 246.1 290 50.7
CARHR168560 Cardamine hirsuta HOM05D004553 ORTHO05D005426 9.6e-62 241.5 218 61.9
Mapoly0065s0014 Marchantia polymorpha HOM05D004553 ORTHO05D005426 1.8e-60 237.3 240 56.2
Cre10.g435550 Chlamydomonas reinhardtii HOM05D004553 ORTHO05D005426 1.3e-58 231.1 286 46.5
SMO304G0012 Selaginella moellendorffii HOM05D004553 ORTHO05D005426 4.2e-57 226.1 299 49.5
Psat0s2087g0120 Pisum sativum HOM05D004553 ORTHO05D005426 1.2e-56 224.6 128 91.4
Haze_27369 Corylus avellana HOM05D004553 ORTHO05D005426 5.5e-49 199.1 293 40.6
MCO15G119 Micromonas commoda HOM05D004553 ORTHO05D005426 1.6e-48 197.6 320 41.9
HPP92_007825 Vanilla planifolia HOM05D004553 ORTHO05D005426 1.5e-46 191.0 261 47.9
CDE04G1470 Ceratophyllum demersum HOM05D004553 ORTHO05D005426 3.3e-46 189.9 126 75.4
CBR_g46193 Chara braunii HOM05D004553 ORTHO05D005426 1.6e-45 187.6 323 38.7
Psat0s2088g0080 Pisum sativum HOM05D004553 ORTHO05D005426 1.6e-40 171.0 94 93.6
PRCOL_00005471 Prasinoderma coloniale HOM05D004553 ORTHO05D005426 1.6e-40 171.0 299 37.1
SEGI_33857 Sequoiadendron giganteum HOM05D004553 ORTHO05D005426 2.2e-34 150.6 129 62.8
AT3G62530 Arabidopsis thaliana HOM05D004553 ORTHO05D005426 2.3e-31 140.6 204 42.6
Nn1g02691 Nelumbo nucifera HOM05D004553 ORTHO05D005426 3.7e-29 133.3 86 79.1
Oeu058648.1 Olea europaea HOM05D004553 ORTHO05D005426 1.3e-26 124.8 128 53.1
SEGI_01794 Sequoiadendron giganteum HOM05D004553 ORTHO05D005426 2.2e-26 124.0 88 72.7
Oeu044898.1 Olea europaea HOM05D004553 ORTHO05D005426 2.9e-26 123.6 219 39.7
SHI26037 Sapria himalayana HOM05D004553 ORTHO05D000023 2.3e-23 114.0 165 44.2
CDE04G0333 Ceratophyllum demersum HOM05D004553 ORTHO05D005426 5.7e-22 109.4 71 78.9
CARHR168550 Cardamine hirsuta HOM05D004553 ORTHO05D005426 2.6e-19 100.5 61 82.0
BcaC01g01031 Brassica carinata HOM05D004553 ORTHO05D005426 4.5e-19 99.8 166 42.2
C03p87400 Brassica napus HOM05D004553 ORTHO05D005426 4.5e-19 99.8 166 42.2
BolC3t21049H Brassica oleracea HOM05D004553 ORTHO05D005426 4.5e-19 99.8 166 42.2
AagrBONN_evm.TU.Sc2ySwM_228.2479 Anthoceros agrestis HOM05D004553 ORTHO05D005426 1.0e-18 98.6 175 42.3
FvH4_2g19410 Fragaria vesca HOM05D004553 ORTHO05D005426 2.5e-17 94.0 63 77.8
Oeu016862.1 Olea europaea HOM05D004553 ORTHO05D005426 1.6e-16 91.3 84 61.9
CAN.G159.14 Capsicum annuum HOM05D004553 ORTHO05D005426 3.6e-16 90.1 72 66.7
CAN.G795.4 Capsicum annuum HOM05D004553 ORTHO05D005426 1.5e-14 84.7 72 62.5
Oeu041828.1 Olea europaea HOM05D004553 ORTHO05D005426 2.0e-14 84.3 80 55.0
Nitab4.5_0002915g0080 Nicotiana tabacum HOM05D000693 ORTHO05D001102 2.9e-10 70.5 112 41.1
CAN.G907.20 Capsicum annuum HOM05D004553 ORTHO05D005426 2.7e-08 63.9 40 75.0
Nitab4.5_0002915g0090 Nicotiana tabacum HOM05D004553 ORTHO05D005426 6.1e-08 62.8 95 42.1
AagrBONN_evm.TU.Sc2ySwM_117.2005 Anthoceros agrestis HOM05D004553 ORTHO05D005426 4.0e-07 60.1 59 57.6


User provided reference genes

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