Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G5736 Trifolium pratense HOM05D007320 ORTHO05D009290 3.9e-165 584.7 296 100.0
TPR.G6440 Trifolium pratense HOM05D007320 ORTHO05D009290 2.3e-117 426.0 357 67.8
Ca_01474_v3 Cicer arietinum L. HOM05D007320 ORTHO05D009290 2.1e-110 402.9 339 66.1
Glyma.12G208100 Glycine max HOM05D007320 ORTHO05D009290 2.7e-105 386.0 338 63.0
VMungo1080G0443 Vigna mungo HOM05D007320 ORTHO05D009290 1.5e-100 370.2 337 61.4
Medtr2g090885 Medicago truncatula HOM05D007320 ORTHO05D009290 3.4e-100 369.0 355 59.2
Phvul.005G098950 Phaseolus vulgaris HOM05D007320 ORTHO05D009290 5.8e-100 368.2 342 59.9
TPR.G34643 Trifolium pratense HOM05D007320 ORTHO05D009290 3.8e-99 365.5 230 82.6
Lalb_Chr25g0279081 Lupinus albus HOM05D007320 ORTHO05D009290 1.2e-92 344.0 343 56.6
Lj3g0010689 Lotus japonicus HOM05D007320 ORTHO05D009290 5.4e-90 335.1 342 56.7
Ciclev10017507m.g Citrus clementina HOM05D007320 ORTHO05D009290 2.1e-89 333.2 343 53.6
TWI59G0750 Tripterygium wilfordii HOM05D007320 ORTHO05D009290 1.3e-88 330.5 322 55.6
Atru.chr6.2840 Acer truncatum HOM05D007320 ORTHO05D009290 1.7e-88 330.1 270 60.7
CiPaw.04G130300 Carya illinoinensis HOM05D007320 ORTHO05D009290 1.4e-85 320.5 269 60.2
Psat5g275040 Pisum sativum HOM05D007320 ORTHO05D009290 9.0e-85 317.8 343 55.1
Actinidia11122 Actinidia chinensis HOM05D007320 ORTHO05D009290 1.3e-80 303.9 270 57.8
Manes.13G139600 Manihot esculenta HOM05D007320 ORTHO05D009290 9.6e-79 297.7 269 58.0
Cpa.g.sc209.6 Carica papaya HOM05D007320 ORTHO05D009290 2.8e-78 296.2 267 57.7
Sopen01g035350 Solanum pennellii HOM05D007320 ORTHO05D009290 1.1e-77 294.3 270 56.3
GSVIVG01020656001 Vitis vinifera HOM05D007320 ORTHO05D009290 1.4e-77 293.9 345 49.0
Solyc01g088490.3 Solanum lycopersicum HOM05D007320 ORTHO05D009290 2.4e-77 293.1 270 55.9
CAN.G756.7 Capsicum annuum HOM05D007320 ORTHO05D009290 3.4e-76 289.3 270 56.3
PGSC0003DMG400001712 Solanum tuberosum HOM05D007320 ORTHO05D009290 3.4e-76 289.3 270 55.6
Nitab4.5_0001895g0020 Nicotiana tabacum HOM05D007320 ORTHO05D009290 3.8e-75 285.8 269 54.6
Nitab4.5_0008210g0010 Nicotiana tabacum HOM05D007320 ORTHO05D009290 6.4e-75 285.0 264 55.7
Cfa014690 Carpinus fangiana HOM05D007320 ORTHO05D009290 1.4e-74 283.9 339 48.1
Cc05_g07980 Coffea canephora HOM05D007320 ORTHO05D009290 2.4e-74 283.1 267 55.1
Nn3g20750 Nelumbo nucifera HOM05D007320 ORTHO05D009290 9.3e-74 281.2 265 56.6
Gohir.A05G253000 Gossypium hirsutum HOM05D007320 ORTHO05D009290 2.1e-73 280.0 307 51.5
Haze_13306 Corylus avellana HOM05D007320 ORTHO05D009290 2.7e-73 279.6 336 47.9
Gorai.009G266400 Gossypium raimondii HOM05D007320 ORTHO05D009290 7.9e-73 278.1 307 51.1
Gohir.D05G254900 Gossypium hirsutum HOM05D007320 ORTHO05D009290 1.0e-72 277.7 307 50.8
Hund07849 Selenicereus undatus HOM05D007320 ORTHO05D009290 5.1e-72 275.4 291 49.5
ClCG02G009070 Citrullus lanatus HOM05D007320 ORTHO05D009290 1.9e-71 273.5 343 45.8
FAN10G1335 Fragaria x ananassa HOM05D007320 ORTHO05D009290 2.8e-70 269.6 267 54.7
CsaV3_2G004500 Cucumis sativus L. HOM05D007320 ORTHO05D009290 3.7e-70 269.2 269 53.2
MSTRG.20317 Avicennia marina HOM05D007320 ORTHO05D009290 4.8e-70 268.9 270 51.1
FvH4_7g08410 Fragaria vesca HOM05D007320 ORTHO05D009290 1.4e-69 267.3 267 53.6
Dinv15897 Davidia involucrata HOM05D007320 ORTHO05D009290 1.8e-69 266.9 270 52.6
FAN10G4046 Fragaria x ananassa HOM05D007320 ORTHO05D009290 1.8e-69 266.9 267 54.3
HanXRQChr17g0565321 Helianthus annuus HOM05D007320 ORTHO05D009290 1.8e-69 266.9 320 46.2
ECA234G2345 Erigeron canadensis HOM05D007320 ORTHO05D009290 5.3e-69 265.4 271 50.6
RcHm_v2.0_Chr0c20g0500221 Rosa chinensis HOM05D007320 ORTHO05D009290 9.0e-69 264.6 270 51.9
MD09G1241100 Malus domestica HOM05D007320 ORTHO05D009290 1.5e-68 263.8 269 52.8
FAN03G0990 Fragaria x ananassa HOM05D007320 ORTHO05D009290 3.4e-68 262.7 265 53.2
Prupe.3G125800 Prunus persica HOM05D007320 ORTHO05D009290 7.6e-68 261.5 269 52.0
Hma1.2p1_0002F.1_g002500 Hydrangea macrophylla HOM05D007320 ORTHO05D009290 5.5e-66 255.4 271 52.8
vmacro12358 Vaccinium macrocarpon HOM05D007320 ORTHO05D009290 1.6e-65 253.8 270 50.7
Rhsim06G0135200 Rhododendron simsii HOM05D007320 ORTHO05D009290 6.0e-65 251.9 270 50.0
SalBow8G4737 Salvia bowleyana HOM05D007320 ORTHO05D009290 1.0e-64 251.1 272 49.6
Aa31LG1G7290 Aethionema arabicum HOM05D007320 ORTHO05D009290 1.3e-64 250.8 267 50.2
CSS0012636 Camellia sinensis var. sinensis HOM05D007320 ORTHO05D009290 2.3e-64 250.0 270 51.5
Migut.L01118 Erythranthe guttata HOM05D007320 ORTHO05D009290 3.9e-64 249.2 321 45.2
Sabra13G0103100 Salix brachista HOM05D007320 ORTHO05D009290 2.5e-63 246.5 269 50.2
COL.COLO4_26851 Corchorus olitorius HOM05D007320 ORTHO05D009290 5.7e-63 245.4 332 46.1
SalBow8G5340 Salvia bowleyana HOM05D007320 ORTHO05D009290 5.7e-63 245.4 272 48.9
Lj1P690T28 Lonicera japonica HOM05D007320 ORTHO05D009290 9.6e-63 244.6 270 49.3
Thecc.08G174300 Theobroma cacao HOM05D007320 ORTHO05D009290 9.6e-63 244.6 288 49.7
CANSAT64G2476 Cannabis sativa HOM05D007320 ORTHO05D009290 1.3e-62 244.2 268 48.1
Oeu000571.1 Olea europaea HOM05D007320 ORTHO05D009290 1.3e-62 244.2 270 49.6
Migut.C00284 Erythranthe guttata HOM05D007320 ORTHO05D009290 4.8e-62 242.3 324 44.4
Potri.013G124100 Populus trichocarpa HOM05D007320 ORTHO05D009290 8.2e-62 241.5 269 49.8
SGA_v2.0_scaffold313G48283 Striga asiatica HOM05D007320 ORTHO05D009290 8.2e-62 241.5 268 48.5
MBI06_g25716_MAGBIO Magnolia biondii HOM05D007320 ORTHO05D009290 1.1e-61 241.1 271 52.0
Sed0016711 Sechium edule HOM05D007320 ORTHO05D009290 4.1e-61 239.2 332 42.8
Dinv19981 Davidia involucrata HOM05D007320 ORTHO05D009290 6.9e-61 238.4 294 47.3
Migut.D01592 Erythranthe guttata HOM05D007320 ORTHO05D009290 1.3e-59 234.2 320 43.8
AUR62035379 Chenopodium quinoa HOM05D007320 ORTHO05D009290 2.9e-59 233.0 267 46.8
Sc07g0005270 Simmondsia chinensis HOM05D007320 ORTHO05D009290 2.9e-59 233.0 267 46.1
Thhalv10008110m.g Eutrema salsugineum HOM05D007320 ORTHO05D009290 3.8e-59 232.6 303 44.6
BcaB02g06809 Brassica carinata HOM05D007320 ORTHO05D009290 6.5e-59 231.9 267 47.6
CARHR005830 Cardamine hirsuta HOM05D007320 ORTHO05D009290 6.5e-59 231.9 267 46.8
Sp1g05080 Schrenkiella parvula HOM05D007320 ORTHO05D009290 6.5e-59 231.9 303 44.9
AT1G06270 Arabidopsis thaliana HOM05D007320 ORTHO05D009290 8.5e-59 231.5 291 45.4
TAR627G0001 Trochodendron aralioides HOM05D007320 ORTHO05D009290 2.5e-58 229.9 272 47.4
AL1G16280 Arabidopsis lyrata HOM05D007320 ORTHO05D009290 3.2e-58 229.6 267 46.8
Lsat_1_v5_gn_4_28301 Lactuca sativa HOM05D007320 ORTHO05D009290 3.2e-58 229.6 289 45.0
THA.LOC104800856 Tarenaya hassleriana HOM05D007320 ORTHO05D009290 1.2e-57 227.6 267 47.6
Carub.0001s0564 Capsella rubella HOM05D007320 ORTHO05D009290 2.1e-57 226.9 267 46.4
DCAR_013053 Daucus carota HOM05D007320 ORTHO05D009290 2.1e-57 226.9 317 42.3
EL10Ac2g02568 Beta vulgaris HOM05D007320 ORTHO05D009290 4.6e-57 225.7 327 40.4
C05p04580 Brassica napus HOM05D007320 ORTHO05D009290 1.3e-56 224.2 268 46.6
BolC5t29229H Brassica oleracea HOM05D007320 ORTHO05D009290 3.0e-56 223.0 268 46.6
BcaC05g24288 Brassica carinata HOM05D007320 ORTHO05D009290 6.7e-56 221.9 268 46.3
A10p04990 Brassica napus HOM05D007320 ORTHO05D009290 2.5e-55 219.9 268 45.5
BraA10t42760Z Brassica rapa HOM05D007320 ORTHO05D009290 2.5e-55 219.9 268 45.5
unitig_62.g23164 Utricularia gibba HOM05D007320 ORTHO05D009290 2.8e-54 216.5 272 43.0
Peaxi162Scf00745g00038 Petunia axillaris HOM05D007320 ORTHO05D009290 3.1e-53 213.0 270 44.4
Eucgr.F01954 Eucalyptus grandis HOM05D007320 ORTHO05D009290 2.9e-51 206.5 269 45.0
MELO3C004341.2 Cucumis melo HOM05D007320 ORTHO05D009290 2.3e-48 196.8 241 45.6
SHI10502 Sapria himalayana HOM05D007320 ORTHO05D009290 8.8e-48 194.9 267 44.2
AUR62024073 Chenopodium quinoa HOM05D007320 ORTHO05D009290 1.3e-46 191.0 231 44.2
arahy.Tifrunner.gnm1.ann1.CSM94Q Arachis hypogaea HOM05D007320 ORTHO05D009290 8.2e-46 188.3 161 63.4
Phvul.005G098533 Phaseolus vulgaris HOM05D007320 ORTHO05D009290 5.3e-45 185.7 183 57.4
arahy.Tifrunner.gnm1.ann1.66V1NK Arachis hypogaea HOM05D007320 ORTHO05D009290 1.9e-42 177.2 163 60.1
PGR083G2305 Punica granatum HOM05D007320 ORTHO05D009290 5.7e-39 165.6 269 39.4
Dinv15900 Davidia involucrata HOM05D007320 ORTHO05D009290 7.2e-34 148.7 154 51.3
Sc21g0003330 Simmondsia chinensis HOM05D007320 ORTHO05D009290 1.7e-27 127.5 193 40.9
Cpa.g.sc209.4 Carica papaya HOM05D007320 ORTHO05D009290 2.7e-25 120.2 151 44.4
MELO3C021360.2 Cucumis melo HOM05D007320 ORTHO05D009290 9.5e-18 95.1 110 46.4
PGSC0003DMG401001710 Solanum tuberosum HOM05D007320 ORTHO05D009290 1.7e-14 84.3 113 43.4
arahy.Tifrunner.gnm1.ann1.5PR57S Arachis hypogaea HOM05D007320 ORTHO05D009290 6.3e-14 82.4 73 58.9
Sc21g0003340 Simmondsia chinensis HOM05D007320 ORTHO05D009290 9.2e-13 78.6 99 44.4
SalBow7G0970 Salvia bowleyana HOM05D000555 ORTHO05D000646 2.0e-12 77.4 133 36.1
Oeu007697.1 Olea europaea HOM05D005287 ORTHO05D006893 9.5e-10 68.6 122 34.4
MBI13_g05940_MAGBIO Magnolia biondii HOM05D000424 ORTHO05D000355 2.1e-09 67.4 103 35.9
Atru.chr3.942 Acer truncatum HOM05D007700 ORTHO05D009669 8.9e-08 62.0 144 28.5
Cpa.g.sc8.109 Carica papaya HOM05D007486 ORTHO05D003673 8.9e-08 62.0 218 23.9
VMungo0331G0753 Vigna mungo HOM05D007700 ORTHO05D009669 8.9e-08 62.0 176 26.1
ClCG01G020760 Citrullus lanatus HOM05D007700 ORTHO05D009669 1.5e-07 61.2 128 29.7
Eucgr.G02802 Eucalyptus grandis HOM05D005287 ORTHO05D006893 1.5e-07 61.2 112 33.0
QL06p052538 Quercus lobata HOM05D007700 ORTHO05D009669 1.5e-07 61.2 214 22.9
DCAR_018829 Daucus carota HOM05D007402 ORTHO05D003673 2.0e-07 60.8 151 29.1
AUR62029362 Chenopodium quinoa HOM05D007402 ORTHO05D003673 3.4e-07 60.1 231 24.2
AUR62034282 Chenopodium quinoa HOM05D007402 ORTHO05D003673 3.4e-07 60.1 231 23.8
Ca_16213_v3 Cicer arietinum L. HOM05D007383 ORTHO05D009254 3.4e-07 60.1 123 35.8
PSO675G5929 Papaver somniferum HOM05D008994 ORTHO05D010954 1.3e-06 58.2 72 37.5
Eucgr.I02272 Eucalyptus grandis HOM05D007700 ORTHO05D009669 1.7e-06 57.8 190 25.3
Manes.14G070900 Manihot esculenta HOM05D007383 ORTHO05D009254 1.7e-06 57.8 126 30.2
Prupe.7G151800 Prunus persica HOM05D000891 ORTHO05D000761 1.7e-06 57.8 147 27.9
MD15G1265700 Malus domestica HOM05D000891 ORTHO05D000761 2.2e-06 57.4 147 27.9
Migut.O00943 Erythranthe guttata HOM05D006895 ORTHO05D008605 3.7e-06 56.6 140 27.1
Glyma.07G109000 Glycine max HOM05D007700 ORTHO05D009669 3.7e-06 56.6 186 27.4
MBI06_g05054_MAGBIO Magnolia biondii HOM05D005362 ORTHO05D006895 3.7e-06 56.6 135 26.7
Medtr3g078580 Medicago truncatula HOM05D007383 ORTHO05D009254 4.9e-06 56.2 123 33.3
Medtr8g005870 Medicago truncatula HOM05D007700 ORTHO05D009669 4.9e-06 56.2 91 31.9
Zm00001eb388530 Zea mays HOM05D022935 ORTHO05D020958 4.9e-06 56.2 175 27.4
Lalb_Chr15g0086601 Lupinus albus HOM05D005337 ORTHO05D006567 6.4e-06 55.8 83 32.5
Migut.F01800 Erythranthe guttata HOM05D005287 ORTHO05D006893 8.3e-06 55.5 128 33.6
Zm00001eb108830 Zea mays HOM05D005362 ORTHO05D006895 8.3e-06 55.5 136 27.9


User provided reference genes

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