Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G5733 Trifolium pratense HOM05D005555 ORTHO05D006923 3.1e-41 171.4 88 100.0
Psat5g178680 Pisum sativum HOM05D005555 ORTHO05D006923 6.9e-33 143.7 84 85.7
TPR.G33802 Trifolium pratense HOM05D005555 ORTHO05D006923 6.9e-33 143.7 84 85.7
EL10Ac2g03146 Beta vulgaris HOM05D005555 ORTHO05D006923 2.2e-31 138.7 85 80.0
FvH4_6g31880 Fragaria vesca HOM05D005555 ORTHO05D006923 2.9e-31 138.3 84 82.1
FAN05G3309 Fragaria x ananassa HOM05D005555 ORTHO05D006923 2.9e-31 138.3 84 82.1
FAN14G2902 Fragaria x ananassa HOM05D005555 ORTHO05D006923 2.9e-31 138.3 84 82.1
Ca_14731_v3 Cicer arietinum L. HOM05D005555 ORTHO05D006923 3.8e-31 137.9 84 82.1
arahy.Tifrunner.gnm1.ann1.GVQ212 Arachis hypogaea HOM05D005555 ORTHO05D006923 6.4e-31 137.1 84 82.1
arahy.Tifrunner.gnm1.ann1.P3VUIG Arachis hypogaea HOM05D005555 ORTHO05D006923 6.4e-31 137.1 84 82.1
arahy.Tifrunner.gnm1.ann1.UR7PB1 Arachis hypogaea HOM05D005555 ORTHO05D006923 6.4e-31 137.1 84 82.1
QL08p010014 Quercus lobata HOM05D005555 ORTHO05D006923 6.4e-31 137.1 84 82.1
VMungo0540G1244 Vigna mungo HOM05D005555 ORTHO05D006923 6.4e-31 137.1 84 82.1
RcHm_v2.0_Chr2g0139231 Rosa chinensis HOM05D005555 ORTHO05D006923 8.4e-31 136.7 84 82.1
FAN02G4472 Fragaria x ananassa HOM05D005555 ORTHO05D006923 1.1e-30 136.3 84 81.0
Gohir.A04G016500 Gossypium hirsutum HOM05D005555 ORTHO05D006923 1.1e-30 136.3 84 81.0
Gohir.D05G369700 Gossypium hirsutum HOM05D005555 ORTHO05D006923 1.1e-30 136.3 84 81.0
Gorai.009G438400 Gossypium raimondii HOM05D005555 ORTHO05D006923 1.1e-30 136.3 84 81.0
Lj6g0008930 Lotus japonicus HOM05D005555 ORTHO05D006923 1.1e-30 136.3 84 81.0
MD17G1190200 Malus domestica HOM05D005555 ORTHO05D006923 1.1e-30 136.3 84 81.0
Potri.011G090800 Populus trichocarpa HOM05D005555 ORTHO05D006923 1.1e-30 136.3 84 82.1
Sabra11G0086200 Salix brachista HOM05D005555 ORTHO05D006923 1.1e-30 136.3 84 82.1
Actinidia35345 Actinidia chinensis HOM05D005555 ORTHO05D006923 1.4e-30 136.0 84 82.1
Dinv40759 Davidia involucrata HOM05D005555 ORTHO05D006923 1.4e-30 136.0 84 82.1
Gorai.009G438500 Gossypium raimondii HOM05D005555 ORTHO05D006923 1.4e-30 136.0 84 81.0
Lj8C169T24 Lonicera japonica HOM05D005555 ORTHO05D006923 1.4e-30 136.0 84 82.1
Lalb_Chr20g0113831 Lupinus albus HOM05D005555 ORTHO05D006923 1.4e-30 136.0 84 81.0
Phvul.006G044000 Phaseolus vulgaris HOM05D005555 ORTHO05D006923 1.4e-30 136.0 84 81.0
TWI39G0347 Tripterygium wilfordii HOM05D005555 ORTHO05D006923 1.4e-30 136.0 84 81.0
Ah.10g032310 Amaranthus hybridus HOM05D005555 ORTHO05D006923 1.9e-30 135.6 84 79.8
arahy.Tifrunner.gnm1.ann1.QY89IE Arachis hypogaea HOM05D005555 ORTHO05D006923 1.9e-30 135.6 84 81.0
Duzib268G1179 Durio zibethinus HOM05D005555 ORTHO05D006923 1.9e-30 135.6 84 81.0
Haze_09680 Corylus avellana HOM05D005555 ORTHO05D006923 2.5e-30 135.2 84 81.0
Dinv22259 Davidia involucrata HOM05D005555 ORTHO05D006923 2.5e-30 135.2 84 82.1
Manes.15G071400 Manihot esculenta HOM05D005555 ORTHO05D006923 2.5e-30 135.2 84 81.0
Ciclev10008353m.g Citrus clementina HOM05D005555 ORTHO05D006923 3.2e-30 134.8 84 81.0
CiPaw.12G130100 Carya illinoinensis HOM05D005555 ORTHO05D006923 4.2e-30 134.4 84 81.0
Prupe.3G065100 Prunus persica HOM05D005555 ORTHO05D006923 4.2e-30 134.4 83 79.5
Sc03g0008570 Simmondsia chinensis HOM05D005555 ORTHO05D006923 4.2e-30 134.4 84 79.8
MSTRG.6923 Avicennia marina HOM05D005555 ORTHO05D006923 5.5e-30 134.0 84 81.0
Glyma.08G316800 Glycine max HOM05D005555 ORTHO05D006923 5.5e-30 134.0 83 80.7
Glyma.18G096300 Glycine max HOM05D005555 ORTHO05D006923 5.5e-30 134.0 83 80.7
Thecc.07G035900 Theobroma cacao HOM05D005555 ORTHO05D006923 5.5e-30 134.0 84 79.8
THA.LOC104817858 Tarenaya hassleriana HOM05D005555 ORTHO05D006923 7.1e-30 133.7 84 79.8
Aa31LG10G3630 Aethionema arabicum HOM05D005555 ORTHO05D006923 9.3e-30 133.3 84 79.8
Atru.chr2.3417 Acer truncatum HOM05D005555 ORTHO05D006923 1.6e-29 132.5 83 80.7
ClCG09G010820 Citrullus lanatus HOM05D005555 ORTHO05D006923 1.6e-29 132.5 83 80.7
Eucgr.F03470 Eucalyptus grandis HOM05D005555 ORTHO05D006923 1.6e-29 132.5 84 79.8
Sed0005603 Sechium edule HOM05D005555 ORTHO05D006923 1.6e-29 132.5 83 80.7
SGA_v2.0_scaffold172G39000 Striga asiatica HOM05D005555 ORTHO05D006923 1.6e-29 132.5 84 78.6
CSS0046165 Camellia sinensis var. sinensis HOM05D005555 ORTHO05D006923 2.1e-29 132.1 83 80.7
GSVIVG01037655001 Vitis vinifera HOM05D005555 ORTHO05D006923 2.1e-29 132.1 84 78.6
BcaB02g11175 Brassica carinata HOM05D005555 ORTHO05D006923 2.7e-29 131.7 84 79.8
BcaC08g43248 Brassica carinata HOM05D005555 ORTHO05D006923 2.7e-29 131.7 84 79.8
A05p19990 Brassica napus HOM05D005555 ORTHO05D006923 2.7e-29 131.7 84 79.8
A06p02920 Brassica napus HOM05D005555 ORTHO05D006923 2.7e-29 131.7 84 79.8
C06p05960 Brassica napus HOM05D005555 ORTHO05D006923 2.7e-29 131.7 84 79.8
BolC6t35709H Brassica oleracea HOM05D005555 ORTHO05D006923 2.7e-29 131.7 84 79.8
BraA05t20906Z Brassica rapa HOM05D005555 ORTHO05D006923 2.7e-29 131.7 84 79.8
BraA06t23497Z Brassica rapa HOM05D005555 ORTHO05D006923 2.7e-29 131.7 84 79.8
Cpa.g.sc12.303 Carica papaya HOM05D005555 ORTHO05D006923 2.7e-29 131.7 84 77.4
ECA240G0357 Erigeron canadensis HOM05D005555 ORTHO05D006923 2.7e-29 131.7 83 79.5
Thhalv10011513m.g Eutrema salsugineum HOM05D005555 ORTHO05D006923 2.7e-29 131.7 84 79.8
Lsat_1_v5_gn_2_47780 Lactuca sativa HOM05D005555 ORTHO05D006923 2.7e-29 131.7 83 79.5
Sp1g37550 Schrenkiella parvula HOM05D005555 ORTHO05D006923 2.7e-29 131.7 84 79.8
CARHR040810 Cardamine hirsuta HOM05D005555 ORTHO05D006923 3.5e-29 131.3 84 78.6
CiPaw.11G190000 Carya illinoinensis HOM05D005555 ORTHO05D006923 3.5e-29 131.3 83 79.5
CsaV3_7G021840 Cucumis sativus L. HOM05D005555 ORTHO05D006923 3.5e-29 131.3 83 79.5
DCAR_001508 Daucus carota HOM05D005555 ORTHO05D006923 3.5e-29 131.3 84 79.8
DCAR_016709 Daucus carota HOM05D005555 ORTHO05D006923 3.5e-29 131.3 84 79.8
CANSAT11G1088 Cannabis sativa HOM05D005555 ORTHO05D006923 4.6e-29 131.0 84 78.6
HanXRQChr05g0134351 Helianthus annuus HOM05D005555 ORTHO05D006923 4.6e-29 131.0 83 78.3
BcaC08g43250 Brassica carinata HOM05D005555 ORTHO05D006923 7.9e-29 130.2 84 77.4
AL1G58400 Arabidopsis lyrata HOM05D005555 ORTHO05D006923 1.0e-28 129.8 84 78.6
AT1G50710 Arabidopsis thaliana HOM05D005555 ORTHO05D006923 1.0e-28 129.8 84 78.6
Carub.0001s3974 Capsella rubella HOM05D005555 ORTHO05D006923 1.0e-28 129.8 84 78.6
unitig_744.g24404 Utricularia gibba HOM05D005555 ORTHO05D006923 1.0e-28 129.8 83 77.1
TAR627G0887 Trochodendron aralioides HOM05D005555 ORTHO05D006923 1.3e-28 129.4 84 77.4
Migut.M01757 Erythranthe guttata HOM05D005555 ORTHO05D006923 2.3e-28 128.6 84 76.2
CSS0038584 Camellia sinensis var. sinensis HOM05D005555 ORTHO05D006923 3.0e-28 128.3 84 77.4
PSO541G4760 Papaver somniferum HOM05D005555 ORTHO05D006923 3.0e-28 128.3 84 77.4
PGR031G0129 Punica granatum HOM05D005555 ORTHO05D006923 5.1e-28 127.5 84 76.2
CDE04G3207 Ceratophyllum demersum HOM05D005555 ORTHO05D006923 6.7e-28 127.1 84 76.2
Medtr3g052180 Medicago truncatula HOM05D005555 ORTHO05D006923 6.7e-28 127.1 84 76.2
Medtr5g049170 Medicago truncatula HOM05D005555 ORTHO05D006923 6.7e-28 127.1 84 76.2
MBI05_g12021_MAGBIO Magnolia biondii HOM05D005555 ORTHO05D006923 8.7e-28 126.7 84 77.4
ATR0752G192 Amborella trichopoda HOM05D005555 ORTHO05D006923 1.5e-27 125.9 84 75.0
MD03G1200100 Malus domestica HOM05D005555 ORTHO05D006923 1.9e-27 125.6 84 75.0
Solyc12g005050.2 Solanum lycopersicum HOM05D005555 ORTHO05D006923 1.9e-27 125.6 83 74.7
Sopen12g001050 Solanum pennellii HOM05D005555 ORTHO05D006923 1.9e-27 125.6 83 74.7
PGSC0003DMG400027869 Solanum tuberosum HOM05D005555 ORTHO05D006923 1.9e-27 125.6 83 74.7
HPP92_010410 Vanilla planifolia HOM05D005555 ORTHO05D006923 1.9e-27 125.6 84 76.2
CAN.G542.3 Capsicum annuum HOM05D005555 ORTHO05D006923 2.5e-27 125.2 83 73.5
Nitab4.5_0000981g0050 Nicotiana tabacum HOM05D005555 ORTHO05D006923 2.5e-27 125.2 83 74.7
Nitab4.5_0008473g0010 Nicotiana tabacum HOM05D005555 ORTHO05D006923 2.5e-27 125.2 83 74.7
Peaxi162Scf00660g00816 Petunia axillaris HOM05D005555 ORTHO05D006923 2.5e-27 125.2 83 74.7
Aqoxy1G02148 Aquilegia oxysepala HOM05D005555 ORTHO05D006923 1.6e-26 122.5 84 72.6
PSO675G4173 Papaver somniferum HOM05D005555 ORTHO05D006923 2.1e-26 122.1 84 75.0
Prupe.4G214200 Prunus persica HOM05D005555 ORTHO05D006923 2.8e-26 121.7 84 69.0
Hund15555 Selenicereus undatus HOM05D005555 ORTHO05D006923 6.2e-26 120.6 84 69.0
Nn1g07133 Nelumbo nucifera HOM05D005555 ORTHO05D006923 1.4e-25 119.4 84 70.2
Rhsim06G0217300 Rhododendron simsii HOM05D005555 ORTHO05D006923 1.4e-25 119.4 100 66.0
CSS0007038 Camellia sinensis var. sinensis HOM05D005555 ORTHO05D006923 3.1e-25 118.2 99 65.7
FvH4_3g22760 Fragaria vesca HOM05D005555 ORTHO05D006923 3.1e-25 118.2 84 72.6
RcHm_v2.0_Chr5g0039771 Rosa chinensis HOM05D005555 ORTHO05D006923 6.9e-25 117.1 84 70.2
Nn1g03520 Nelumbo nucifera HOM05D005555 ORTHO05D006923 1.2e-24 116.3 83 68.7
Zm00001eb230170 Zea mays HOM05D005555 ORTHO05D006923 2.0e-24 115.5 82 69.5
arahy.Tifrunner.gnm1.ann1.21WID0 Arachis hypogaea HOM05D005555 ORTHO05D006923 3.4e-24 114.8 84 64.3
arahy.Tifrunner.gnm1.ann1.92YVPD Arachis hypogaea HOM05D005555 ORTHO05D006923 3.4e-24 114.8 84 64.3
Mapoly0032s0110 Marchantia polymorpha HOM05D005555 ORTHO05D006923 1.3e-23 112.8 83 66.3
Cc07_g19690 Coffea canephora HOM05D005555 ORTHO05D006923 2.2e-23 112.1 83 71.1
Cc05_g13620 Coffea canephora HOM05D005555 ORTHO05D006923 8.4e-23 110.2 83 69.9
SMO352G0045 Selaginella moellendorffii HOM05D005555 ORTHO05D006923 1.4e-22 109.4 83 65.1
BcaB07g33510 Brassica carinata HOM05D005555 ORTHO05D006923 9.3e-22 106.7 97 61.9
MELO3C013162.2 Cucumis melo HOM05D005555 ORTHO05D006923 9.3e-22 106.7 63 81.0
AUR62038682 Chenopodium quinoa HOM05D005555 ORTHO05D006923 1.6e-21 105.9 86 66.3
MD09G1208700 Malus domestica HOM05D005555 ORTHO05D006923 4.6e-21 104.4 67 77.6
Pp3c17_11280 Physcomitrium patens HOM05D005555 ORTHO05D006923 6.1e-21 104.0 83 62.7
HanXRQChr03g0076481 Helianthus annuus HOM05D005555 ORTHO05D006923 1.1e-19 99.8 67 74.6
vmacro11723 Vaccinium macrocarpon HOM05D005555 ORTHO05D006923 4.3e-19 97.8 127 48.0
AUR62018195 Chenopodium quinoa HOM05D005555 ORTHO05D006923 5.7e-19 97.4 81 64.2
Gohir.D05G369900 Gossypium hirsutum HOM05D005555 ORTHO05D006923 2.8e-18 95.1 53 83.0
Sed0020027 Sechium edule HOM05D005555 ORTHO05D006923 8.2e-18 93.6 84 63.1
CBR_g19746 Chara braunii HOM05D005555 ORTHO05D006923 8.5e-15 83.6 87 46.0
Hma1.2p1_0206F.1_g087650 Hydrangea macrophylla HOM05D005555 ORTHO05D006923 3.2e-14 81.6 43 88.4
Hma1.2p1_0545F.1_g176020 Hydrangea macrophylla HOM05D005555 ORTHO05D006923 3.2e-14 81.6 43 88.4
FAN16G3656 Fragaria x ananassa HOM05D005555 ORTHO05D006923 7.9e-13 77.0 68 60.3
CBR_g6714 Chara braunii HOM05D005555 ORTHO05D006923 3.3e-11 71.6 83 42.2
Cfa020338 Carpinus fangiana HOM05D005555 ORTHO05D006923 1.0e-07 60.1 42 73.8


User provided reference genes

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