Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G5717 Trifolium pratense HOM05D006249 ORTHO05D007643 6.4e-171 604.0 301 100.0
Medtr7g096100 Medicago truncatula HOM05D006249 ORTHO05D007643 4.3e-151 538.1 308 87.0
Psat3g061040 Pisum sativum HOM05D006249 ORTHO05D007643 4.0e-149 531.6 305 86.9
Glyma.19G161200 Glycine max HOM05D006249 ORTHO05D007643 6.2e-134 481.1 307 78.8
Lj1g0022179 Lotus japonicus HOM05D006249 ORTHO05D007643 5.3e-133 478.0 282 82.6
VMungo1383G3440 Vigna mungo HOM05D004045 ORTHO05D004923 1.6e-129 466.5 280 81.1
arahy.Tifrunner.gnm1.ann1.EN4NAA Arachis hypogaea HOM05D006249 ORTHO05D007643 4.0e-125 451.8 281 78.3
arahy.Tifrunner.gnm1.ann1.3ZGG11 Arachis hypogaea HOM05D006249 ORTHO05D007643 7.6e-124 447.6 281 77.6
Medtr4g076080 Medicago truncatula HOM05D006249 ORTHO05D007643 3.0e-120 435.6 293 76.1
Lalb_Chr25g0290111 Lupinus albus HOM05D006249 ORTHO05D007643 2.2e-118 429.5 306 73.9
CiPaw.03G257400 Carya illinoinensis HOM05D006249 ORTHO05D007643 2.3e-112 409.5 254 74.8
ClCG01G001850 Citrullus lanatus HOM05D006249 ORTHO05D007643 1.5e-111 406.8 296 67.6
CsaV3_5G002000 Cucumis sativus L. HOM05D006249 ORTHO05D007643 2.8e-110 402.5 296 66.9
Ciclev10021257m.g Citrus clementina HOM05D006249 ORTHO05D007643 1.4e-109 400.2 277 68.2
Potri.005G218700 Populus trichocarpa HOM05D006249 ORTHO05D007643 1.4e-109 400.2 313 64.9
Thecc.01G267400 Theobroma cacao HOM05D006249 ORTHO05D007643 1.8e-109 399.8 260 71.9
Manes.05G084500 Manihot esculenta HOM05D006249 ORTHO05D007643 5.3e-109 398.3 281 68.7
MELO3C005753.2 Cucumis melo HOM05D006249 ORTHO05D007643 1.2e-108 397.1 296 66.6
COL.COLO4_06075 Corchorus olitorius HOM05D006249 ORTHO05D007643 3.4e-108 395.6 280 65.4
GSVIVG01000723001 Vitis vinifera HOM05D006249 ORTHO05D007643 3.4e-108 395.6 278 67.3
Aa31LG1G9510 Aethionema arabicum HOM05D006249 ORTHO05D007643 5.9e-108 394.8 304 64.8
CANSAT01G0091 Cannabis sativa HOM05D006249 ORTHO05D007643 2.2e-107 392.9 247 72.9
RcHm_v2.0_Chr6g0289561 Rosa chinensis HOM05D006249 ORTHO05D007643 3.8e-107 392.1 287 66.9
Peaxi162Scf00049g00209 Petunia axillaris HOM05D006249 ORTHO05D007643 6.5e-107 391.3 276 67.4
Duzib138G0419 Durio zibethinus HOM05D006249 ORTHO05D007643 8.5e-107 391.0 254 70.9
Haze_24532 Corylus avellana HOM05D006249 ORTHO05D007643 1.1e-106 390.6 281 67.6
QL12p042687 Quercus lobata HOM05D006249 ORTHO05D007643 1.1e-106 390.6 307 63.8
Sopen09g027650 Solanum pennellii HOM05D006249 ORTHO05D007643 4.2e-106 388.7 295 62.0
FvH4_2g22511 Fragaria vesca HOM05D006249 ORTHO05D007643 9.4e-106 387.5 282 66.3
Solyc09g065860.3 Solanum lycopersicum HOM05D006249 ORTHO05D007643 1.6e-105 386.7 295 61.7
CSS0046504 Camellia sinensis var. sinensis HOM05D006249 ORTHO05D007643 3.6e-105 385.6 250 71.6
Cpa.g.sc52.92 Carica papaya HOM05D006249 ORTHO05D007643 6.1e-105 384.8 279 65.2
PGR044G2488 Punica granatum HOM05D006249 ORTHO05D007643 6.1e-105 384.8 303 63.0
THA.LOC104801257 Tarenaya hassleriana HOM05D006249 ORTHO05D007643 1.0e-104 384.0 308 63.0
Eucgr.K03312 Eucalyptus grandis HOM05D006249 ORTHO05D007643 2.3e-104 382.9 255 69.4
Gohir.A11G127400 Gossypium hirsutum HOM05D006249 ORTHO05D007643 3.9e-104 382.1 290 62.4
Atru.chr5.1566 Acer truncatum HOM05D006249 ORTHO05D007643 5.1e-104 381.7 232 74.1
Atru.chr5.1568 Acer truncatum HOM05D006249 ORTHO05D007643 5.1e-104 381.7 232 74.1
CAN.G1259.4 Capsicum annuum HOM05D006249 ORTHO05D007643 5.1e-104 381.7 256 70.7
BcaC07g42289 Brassica carinata HOM05D006249 ORTHO05D007643 2.0e-103 379.8 302 62.3
BolC5t28944H Brassica oleracea HOM05D006249 ORTHO05D007643 2.0e-103 379.8 302 62.3
TAR362G0606 Trochodendron aralioides HOM05D006249 ORTHO05D007643 2.0e-103 379.8 291 64.9
C05p01650 Brassica napus HOM05D006249 ORTHO05D007643 2.6e-103 379.4 282 65.6
CARHR002370 Cardamine hirsuta HOM05D006249 ORTHO05D007643 2.6e-103 379.4 257 68.1
Nitab4.5_0001556g0120 Nicotiana tabacum HOM05D006249 ORTHO05D007643 3.3e-103 379.0 256 69.9
Nn1g02571 Nelumbo nucifera HOM05D006249 ORTHO05D007643 5.7e-103 378.3 277 67.5
Migut.D00374 Erythranthe guttata HOM05D006249 ORTHO05D007643 9.7e-103 377.5 248 70.2
A10p01650 Brassica napus HOM05D006249 ORTHO05D007643 1.3e-102 377.1 307 61.2
BraA10t42442Z Brassica rapa HOM05D006249 ORTHO05D007643 1.3e-102 377.1 307 60.9
Prupe.8G232100 Prunus persica HOM05D006249 ORTHO05D007643 1.3e-102 377.1 290 65.2
Dinv34569 Davidia involucrata HOM05D006249 ORTHO05D007643 1.7e-102 376.7 281 67.3
Gorai.007G142000 Gossypium raimondii HOM05D006249 ORTHO05D007643 1.7e-102 376.7 290 61.7
Lj2C1159G1 Lonicera japonica HOM05D006249 ORTHO05D007643 1.7e-102 376.7 244 74.2
Gohir.D11G132800 Gossypium hirsutum HOM05D006249 ORTHO05D007643 2.2e-102 376.3 290 61.4
Rhsim01G0269700 Rhododendron simsii HOM05D006249 ORTHO05D007643 2.2e-102 376.3 272 67.3
Carub.0001s0216 Capsella rubella HOM05D006249 ORTHO05D007643 4.8e-102 375.2 265 66.0
ECA248G0032 Erigeron canadensis HOM05D006249 ORTHO05D007643 6.3e-102 374.8 274 63.9
AT1G03030 Arabidopsis thaliana HOM05D006249 ORTHO05D007643 8.2e-102 374.4 257 66.5
Sc17g0000990 Simmondsia chinensis HOM05D006249 ORTHO05D007643 4.1e-101 372.1 246 68.7
vmacro14872 Vaccinium macrocarpon HOM05D006249 ORTHO05D007643 4.1e-101 372.1 251 68.1
PGSC0003DMG400019301 Solanum tuberosum HOM05D006249 ORTHO05D007643 5.3e-101 371.7 239 70.7
Thhalv10008317m.g Eutrema salsugineum HOM05D006249 ORTHO05D007643 1.5e-100 370.2 248 68.5
MD05G1205700 Malus domestica HOM05D006249 ORTHO05D007643 2.6e-100 369.4 272 65.1
SGA_v2.0_scaffold1G00558 Striga asiatica HOM05D004045 ORTHO05D004923 2.6e-100 369.4 247 68.8
Lsat_1_v5_gn_5_186740 Lactuca sativa HOM05D006249 ORTHO05D007643 1.0e-99 367.5 258 66.7
Phvul.001G156700 Phaseolus vulgaris HOM05D006249 ORTHO05D007643 1.3e-99 367.1 222 78.8
Aqoxy2G03531 Aquilegia oxysepala HOM05D006249 ORTHO05D007643 1.4e-98 363.6 259 66.4
Cc01_g18850 Coffea canephora HOM05D006249 ORTHO05D007643 1.9e-98 363.2 263 62.7
AL1G12480 Arabidopsis lyrata HOM05D006249 ORTHO05D007643 2.5e-98 362.8 232 72.0
AUR62011941 Chenopodium quinoa HOM05D006249 ORTHO05D007643 2.5e-98 362.8 280 61.4
MBI04_g06851_MAGBIO Magnolia biondii HOM05D006249 ORTHO05D007643 5.5e-98 361.7 335 56.7
FAN15G1994 Fragaria x ananassa HOM05D004045 ORTHO05D004923 1.2e-97 360.5 253 68.4
FAN15G3229 Fragaria x ananassa HOM05D004045 ORTHO05D004923 1.2e-97 360.5 253 68.4
SalBow4G2323 Salvia bowleyana HOM05D006249 ORTHO05D007643 1.2e-97 360.5 248 66.9
Hund09572 Selenicereus undatus HOM05D006249 ORTHO05D007643 1.6e-97 360.1 249 67.1
HanXRQChr01g0006841 Helianthus annuus HOM05D006249 ORTHO05D007643 2.1e-97 359.8 268 61.6
Nitab4.5_0000187g0200 Nicotiana tabacum HOM05D006249 ORTHO05D007643 1.0e-96 357.5 230 72.6
MSTRG.21512 Avicennia marina HOM05D006249 ORTHO05D007643 8.8e-96 354.4 247 66.0
CSS0032391 Camellia sinensis var. sinensis HOM05D006249 ORTHO05D007643 8.8e-96 354.4 231 70.6
CDE06G0138 Ceratophyllum demersum HOM05D006249 ORTHO05D007643 2.0e-95 353.2 278 59.7
ATR0665G572 Amborella trichopoda HOM05D006249 ORTHO05D007643 9.1e-93 344.4 267 62.9
Oeu018173.1 Olea europaea HOM05D006249 ORTHO05D007643 9.1e-93 344.4 248 64.5
Sed0010412 Sechium edule HOM05D006249 ORTHO05D007643 1.5e-90 337.0 258 63.6
Sabra05G0167700 Salix brachista HOM05D005019 ORTHO05D006625 1.2e-89 334.0 276 62.0
PSO832G1981 Papaver somniferum HOM05D006249 ORTHO05D007643 1.6e-89 333.6 209 74.2
TWI18G0435 Tripterygium wilfordii HOM05D006249 ORTHO05D007643 2.7e-89 332.8 247 63.2
PSO210G4763 Papaver somniferum HOM05D006249 ORTHO05D007643 1.4e-88 330.5 209 73.7
HPP92_012490 Vanilla planifolia HOM05D006249 ORTHO05D007643 1.2e-87 327.4 268 58.2
Os12g0601200 Oryza sativa ssp. japonica HOM05D006249 ORTHO05D007643 4.1e-85 318.9 235 62.1
BcaC07g42286 Brassica carinata HOM05D006249 ORTHO05D007643 2.7e-84 316.2 323 53.3
Zm00001eb135540 Zea mays HOM05D006249 ORTHO05D007643 5.9e-84 315.1 244 61.5
AUR62032256 Chenopodium quinoa HOM05D006249 ORTHO05D007643 9.4e-82 307.8 269 56.5
Ah.02g111470 Amaranthus hybridus HOM05D006249 ORTHO05D007643 8.0e-81 304.7 280 56.1
Mapoly0096s0074 Marchantia polymorpha HOM05D006249 ORTHO05D007643 1.1e-74 284.3 235 57.9
Pp3c17_16800 Physcomitrium patens HOM05D006249 ORTHO05D007643 8.9e-72 274.6 231 56.7
BcaC07g42292 Brassica carinata HOM05D006249 ORTHO05D007643 3.7e-70 269.2 333 48.0
unitig_0.g1129 Utricularia gibba HOM05D006249 ORTHO05D007643 8.3e-70 268.1 184 65.2
Actinidia21156 Actinidia chinensis HOM05D006249 ORTHO05D007643 2.9e-67 259.6 261 54.8
EL10Ac5g10475 Beta vulgaris HOM05D006249 ORTHO05D007643 6.6e-67 258.5 151 73.5
SEGI_12640 Sequoiadendron giganteum HOM05D006249 ORTHO05D007643 4.3e-66 255.8 168 66.7
AagrBONN_evm.TU.Sc2ySwM_228.3891 Anthoceros agrestis HOM05D006249 ORTHO05D007643 3.0e-64 249.6 208 56.2
Ca_15970_v3 Cicer arietinum L. HOM05D006249 ORTHO05D007643 6.8e-64 248.4 156 79.5
arahy.Tifrunner.gnm1.ann1.U7WVQR Arachis hypogaea HOM05D006249 ORTHO05D007643 6.0e-60 235.3 230 54.3
RcHm_v2.0_Chr4g0397901 Rosa chinensis HOM05D006249 ORTHO05D007643 6.0e-60 235.3 176 63.6
SMO358G0282 Selaginella moellendorffii HOM05D000331 ORTHO05D002018 8.9e-56 221.5 171 60.2
Cre02.g101000 Chlamydomonas reinhardtii HOM05D006249 ORTHO05D007643 5.2e-48 195.7 270 38.9
MCO14G208 Micromonas commoda HOM05D006249 ORTHO05D007643 1.0e-43 181.4 245 40.0
CBR_g19145 Chara braunii HOM05D006249 ORTHO05D007643 1.7e-38 164.1 150 53.3
Medtr8g064430 Medicago truncatula HOM05D006249 ORTHO05D007643 2.4e-37 160.2 124 69.4
Sp1g02020 Schrenkiella parvula HOM05D006249 ORTHO05D007643 2.7e-36 156.8 139 54.7
Glyma.03G158766 Glycine max HOM05D006249 ORTHO05D007643 6.6e-35 152.1 94 83.0
Oeu018171.1 Olea europaea HOM05D006249 ORTHO05D007643 1.1e-32 144.8 164 46.3
Hund30725 Selenicereus undatus HOM05D006249 ORTHO05D007643 9.3e-29 131.7 99 59.6
arahy.Tifrunner.gnm1.ann1.FBQK8B Arachis hypogaea HOM05D006249 ORTHO05D007643 4.6e-28 129.4 117 57.3
arahy.Tifrunner.gnm1.ann1.AHQ53Z Arachis hypogaea HOM05D006249 ORTHO05D007643 1.3e-27 127.9 117 56.4
Hund30696 Selenicereus undatus HOM05D006249 ORTHO05D007643 5.6e-26 122.5 98 57.1
Glyma.03G158832 Glycine max HOM05D006249 ORTHO05D007643 2.8e-25 120.2 66 81.8
Cfa022768 Carpinus fangiana HOM05D006249 ORTHO05D007643 3.6e-25 119.8 150 40.0
PRCOL_00003971 Prasinoderma coloniale HOM05D006249 ORTHO05D007643 3.4e-23 113.2 151 39.1
SHI29847 Sapria himalayana HOM05D006249 ORTHO05D007643 2.3e-19 100.5 137 39.4
SHI34902 Sapria himalayana HOM05D006249 ORTHO05D007643 8.7e-19 98.6 143 39.9
CSS0005124 Camellia sinensis var. sinensis HOM05D006249 ORTHO05D007643 3.4e-15 86.7 58 70.7
SHI29011 Sapria himalayana HOM05D006249 ORTHO05D007643 1.6e-12 77.8 202 29.7
arahy.Tifrunner.gnm1.ann1.GWHG3I Arachis hypogaea HOM05D006249 ORTHO05D007643 2.7e-12 77.0 74 51.4
SHI04506 Sapria himalayana HOM05D006249 ORTHO05D007643 9.6e-10 68.6 121 32.2
SHI16544 Sapria himalayana HOM05D006249 ORTHO05D007643 1.3e-09 68.2 116 39.7
SHI31647 Sapria himalayana HOM05D006249 ORTHO05D007643 1.3e-09 68.2 65 50.8
SHI34501 Sapria himalayana HOM05D006249 ORTHO05D007643 1.1e-08 65.1 99 40.4
SHI36882 Sapria himalayana HOM05D006249 ORTHO05D007643 1.4e-08 64.7 117 32.5
Psat5g265600 Pisum sativum HOM05D006249 ORTHO05D007643 5.3e-08 62.8 66 56.1
SHI36883 Sapria himalayana HOM05D006249 ORTHO05D007643 5.3e-08 62.8 56 55.4
SHI54291 Sapria himalayana HOM05D006249 ORTHO05D007643 6.9e-08 62.4 159 32.7
SHI49503 Sapria himalayana HOM05D000624 ORTHO05D000495 4.5e-07 59.7 50 60.0
arahy.Tifrunner.gnm1.ann1.X4NPJI Arachis hypogaea HOM05D004045 ORTHO05D004923 5.8e-07 59.3 74 44.6
SHI27267 Sapria himalayana HOM05D000624 ORTHO05D000495 2.2e-06 57.4 56 50.0


User provided reference genes

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