Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G5656 Trifolium pratense HOM05D002307 ORTHO05D002378 4.2e-79 298.1 168 100.0
TPR.G37772 Trifolium pratense HOM05D002307 ORTHO05D002378 3.2e-31 139.0 146 64.4
Psat6g172320 Pisum sativum HOM05D002307 ORTHO05D002378 8.8e-29 131.0 146 52.1
Medtr1g090663 Medicago truncatula HOM05D002307 ORTHO05D002378 3.7e-27 125.6 146 60.3
Glyma.20G193700 Glycine max HOM05D002307 ORTHO05D002378 6.5e-24 114.8 147 56.5
Ca_10436_v3 Cicer arietinum L. HOM05D002307 ORTHO05D002378 1.6e-22 110.2 144 58.3
Phvul.007G139200 Phaseolus vulgaris HOM05D002307 ORTHO05D002378 6.1e-22 108.2 146 57.5
Lalb_Chr02g0151011 Lupinus albus HOM05D002307 ORTHO05D002378 2.3e-21 106.3 143 57.3
Glyma.03G064100 Glycine max HOM05D002307 ORTHO05D002378 2.2e-19 99.8 148 43.9
Glyma.10G196500 Glycine max HOM05D002307 ORTHO05D002378 2.8e-19 99.4 148 52.7
VMungo0720G2779 Vigna mungo HOM05D002307 ORTHO05D002378 4.9e-19 98.6 146 54.8
Lj5g0022127 Lotus japonicus HOM05D002307 ORTHO05D002378 3.3e-15 85.9 122 58.2
arahy.Tifrunner.gnm1.ann1.130PY3 Arachis hypogaea HOM05D002307 ORTHO05D002378 3.0e-13 79.3 153 50.3
arahy.Tifrunner.gnm1.ann1.RI8FGC Arachis hypogaea HOM05D002307 ORTHO05D002378 5.2e-13 78.6 154 48.7
QL08p053335 Quercus lobata HOM05D002307 ORTHO05D002378 9.8e-12 74.3 79 50.6
CiPaw.02G170800 Carya illinoinensis HOM05D002307 ORTHO05D002378 3.7e-11 72.4 63 77.8
Cfa001785 Carpinus fangiana HOM05D002307 ORTHO05D002378 4.1e-10 68.9 63 74.6
RcHm_v2.0_Chr1g0362191 Rosa chinensis HOM05D002307 ORTHO05D002378 4.1e-10 68.9 62 72.6
Haze_16760 Corylus avellana HOM05D002307 ORTHO05D002378 7.0e-10 68.2 82 62.2
Dinv31246 Davidia involucrata HOM05D002307 ORTHO05D002378 7.0e-10 68.2 78 60.3
MD01G1100200 Malus domestica HOM05D002307 ORTHO05D002378 7.0e-10 68.2 58 81.0
CiPaw.01G266500 Carya illinoinensis HOM05D002307 ORTHO05D002378 1.2e-09 67.4 63 71.4
Rhsim03G0112500 Rhododendron simsii HOM05D002307 ORTHO05D002378 1.2e-09 67.4 59 57.6
RhsimUnG0033000 Rhododendron simsii HOM05D002307 ORTHO05D002378 1.2e-09 67.4 59 57.6
Ciclev10032527m.g Citrus clementina HOM05D002307 ORTHO05D002378 1.6e-09 67.0 123 50.4
FvH4_7g18380 Fragaria vesca HOM05D002307 ORTHO05D002378 2.7e-09 66.2 73 68.5
FAN06G2797 Fragaria x ananassa HOM05D002307 ORTHO05D002378 2.7e-09 66.2 73 68.5
FAN06G4622 Fragaria x ananassa HOM05D002307 ORTHO05D002378 2.7e-09 66.2 73 68.5
FAN10G1030 Fragaria x ananassa HOM05D002307 ORTHO05D002378 3.5e-09 65.9 62 74.2
FAN10G3682 Fragaria x ananassa HOM05D002307 ORTHO05D002378 3.5e-09 65.9 62 74.2
Solyc11g008080.3 Solanum lycopersicum HOM05D002307 ORTHO05D002378 4.6e-09 65.5 55 81.8
Sopen11g003930 Solanum pennellii HOM05D002307 ORTHO05D002378 4.6e-09 65.5 55 81.8
Cpa.g.sc53.154 Carica papaya HOM05D002307 ORTHO05D002378 7.8e-09 64.7 70 70.0
Cc02_g10710 Coffea canephora HOM05D002307 ORTHO05D002378 7.8e-09 64.7 71 52.1
Potri.008G032500 Populus trichocarpa HOM05D002307 ORTHO05D002378 7.8e-09 64.7 65 72.3
ECA232G4966 Erigeron canadensis HOM05D002307 ORTHO05D002378 1.0e-08 64.3 84 60.7
Duzib114G0495 Durio zibethinus HOM05D002307 ORTHO05D002378 1.3e-08 63.9 66 51.5
HanXRQChr10g0304431 Helianthus annuus HOM05D002307 ORTHO05D002378 1.3e-08 63.9 67 70.1
Ah.11g044750 Amaranthus hybridus HOM05D002307 ORTHO05D002378 1.7e-08 63.5 55 78.2
CSS0033229 Camellia sinensis var. sinensis HOM05D002307 ORTHO05D002378 1.7e-08 63.5 126 47.6
Potri.010G229200 Populus trichocarpa HOM05D002307 ORTHO05D002378 1.7e-08 63.5 145 45.5
PGSC0003DMG400031075 Solanum tuberosum HOM05D002307 ORTHO05D002378 1.7e-08 63.5 55 80.0
EL10Ac2g03893 Beta vulgaris HOM05D002307 ORTHO05D002378 2.3e-08 63.2 73 65.8
CSS0018989 Camellia sinensis var. sinensis HOM05D002307 ORTHO05D002378 2.3e-08 63.2 80 47.5
Oeu010019.1 Olea europaea HOM05D002307 ORTHO05D002378 2.3e-08 63.2 55 76.4
Oeu051654.1 Olea europaea HOM05D002307 ORTHO05D002378 2.3e-08 63.2 67 62.7
CAN.G459.29 Capsicum annuum HOM05D002307 ORTHO05D002378 3.0e-08 62.8 55 74.5
Manes.10G051600 Manihot esculenta HOM05D002307 ORTHO05D002378 3.0e-08 62.8 78 47.4
Prupe.2G205900 Prunus persica HOM05D002307 ORTHO05D002378 3.0e-08 62.8 74 68.9
Migut.F01942 Erythranthe guttata HOM05D002307 ORTHO05D002378 5.0e-08 62.0 85 51.8
HanXRQChr09g0248621 Helianthus annuus HOM05D002307 ORTHO05D002378 5.0e-08 62.0 78 66.7
Lsat_1_v5_gn_9_71481 Lactuca sativa HOM05D002307 ORTHO05D002378 5.0e-08 62.0 67 68.7
MD07G1167100 Malus domestica HOM05D002307 ORTHO05D002378 5.0e-08 62.0 58 75.9
vmacro07190 Vaccinium macrocarpon HOM05D002307 ORTHO05D002378 5.0e-08 62.0 52 59.6
Atru.chr12.882 Acer truncatum HOM05D002307 ORTHO05D002378 6.6e-08 61.6 78 64.1
COL.COLO4_09862 Corchorus olitorius HOM05D002307 ORTHO05D002378 6.6e-08 61.6 59 52.5
HanXRQChr09g0253931 Helianthus annuus HOM05D002307 ORTHO05D002378 6.6e-08 61.6 73 69.9
Nitab4.5_0004987g0040 Nicotiana tabacum HOM05D002307 ORTHO05D002378 6.6e-08 61.6 68 67.6
THA.LOC104800578 Tarenaya hassleriana HOM05D002307 ORTHO05D002378 6.6e-08 61.6 72 63.9
Gohir.D10G208601 Gossypium hirsutum HOM05D002307 ORTHO05D002378 8.6e-08 61.2 66 48.5
Gorai.011G234500 Gossypium raimondii HOM05D002307 ORTHO05D002378 8.6e-08 61.2 66 48.5
Manes.07G094900 Manihot esculenta HOM05D002307 ORTHO05D002378 8.6e-08 61.2 65 72.3
Nitab4.5_0002285g0030 Nicotiana tabacum HOM05D002307 ORTHO05D002378 8.6e-08 61.2 68 67.6
Thecc.10G087300 Theobroma cacao HOM05D002307 ORTHO05D002378 8.6e-08 61.2 64 54.7
FAN01G3055 Fragaria x ananassa HOM05D002307 ORTHO05D002378 1.1e-07 60.8 60 76.7
Gohir.A10G200900 Gossypium hirsutum HOM05D002307 ORTHO05D002378 1.1e-07 60.8 66 48.5
Lalb_Chr24g0394911 Lupinus albus HOM05D002307 ORTHO05D002378 1.1e-07 60.8 74 60.8
Hund19459 Selenicereus undatus HOM05D002307 ORTHO05D002378 1.1e-07 60.8 67 68.7
Duzib106G1267 Durio zibethinus HOM05D002307 ORTHO05D002378 1.5e-07 60.5 59 52.5
MSTRG.27494 Avicennia marina HOM05D002307 ORTHO05D002378 1.9e-07 60.1 58 75.9
Dinv36374 Davidia involucrata HOM05D002307 ORTHO05D002378 1.9e-07 60.1 54 77.8
FAN03G3366 Fragaria x ananassa HOM05D002307 ORTHO05D002378 1.9e-07 60.1 60 75.0
Aqoxy2G01674 Aquilegia oxysepala HOM05D002307 ORTHO05D002378 2.5e-07 59.7 56 71.4
Ah.10g034430 Amaranthus hybridus HOM05D002307 ORTHO05D002378 3.3e-07 59.3 63 71.4
CSS0003217 Camellia sinensis var. sinensis HOM05D002307 ORTHO05D002378 3.3e-07 59.3 66 68.2
AT2G28140 Arabidopsis thaliana HOM05D002307 ORTHO05D002378 4.3e-07 58.9 57 54.4
TAR369G0156 Trochodendron aralioides HOM05D002307 ORTHO05D002378 4.3e-07 58.9 63 68.3
AL4G22010 Arabidopsis lyrata HOM05D002307 ORTHO05D002378 5.6e-07 58.5 76 44.7
Sabra08G0021400 Salix brachista HOM05D002307 ORTHO05D002378 7.3e-07 58.2 65 70.8
Actinidia06731 Actinidia chinensis HOM05D002307 ORTHO05D002378 1.2e-06 57.4 66 62.1
Carub.0004s0894 Capsella rubella HOM05D002307 ORTHO05D002378 1.2e-06 57.4 76 43.4
Duzib168G1056 Durio zibethinus HOM05D002307 ORTHO05D002378 1.2e-06 57.4 63 66.7
Phvul.005G130700 Phaseolus vulgaris HOM05D002307 ORTHO05D002378 1.2e-06 57.4 77 61.0
THA.LOC104826385 Tarenaya hassleriana HOM05D002307 ORTHO05D002378 1.6e-06 57.0 76 57.9
MBI14_g29800_MAGBIO Magnolia biondii HOM05D002619 ORTHO05D002804 2.1e-06 56.6 66 66.7
MBI14_g44426_MAGBIO Magnolia biondii HOM05D002619 ORTHO05D002804 2.1e-06 56.6 66 66.7
Manes.04G013500 Manihot esculenta HOM05D002307 ORTHO05D002378 2.1e-06 56.6 55 72.7
QL01p015252 Quercus lobata HOM05D002307 ORTHO05D002378 2.1e-06 56.6 64 65.6
SGA_v2.0_scaffold62G21376 Striga asiatica HOM05D002307 ORTHO05D002378 2.1e-06 56.6 67 47.8
Thhalv10017900m.g Eutrema salsugineum HOM05D002307 ORTHO05D002378 2.8e-06 56.2 57 70.2
Glyma.12G178200 Glycine max HOM05D002307 ORTHO05D002378 4.7e-06 55.5 75 61.3
Aa31LG1G12800 Aethionema arabicum HOM05D002307 ORTHO05D002378 6.2e-06 55.1 64 65.6
Aa31LG5G8000 Aethionema arabicum HOM05D002307 ORTHO05D002378 6.2e-06 55.1 78 57.7
CANSAT56G3556 Cannabis sativa HOM05D002307 ORTHO05D002378 6.2e-06 55.1 55 72.7
Ca_01709_v3 Cicer arietinum L. HOM05D002307 ORTHO05D002378 6.2e-06 55.1 85 52.9
Eucgr.B03932 Eucalyptus grandis HOM05D002307 ORTHO05D002378 6.2e-06 55.1 79 55.7
Lj3P937T88 Lonicera japonica HOM05D002307 ORTHO05D002378 6.2e-06 55.1 128 45.3
Hund03343 Selenicereus undatus HOM05D002307 ORTHO05D002378 6.2e-06 55.1 65 67.7


User provided reference genes

Program Settings