Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G5649 Trifolium pratense HOM05D003745 ORTHO05D004215 1.4e-41 172.6 89 100.0
Medtr1g061120 Medicago truncatula HOM05D003745 ORTHO05D004215 3.0e-28 128.3 94 71.3
Psat7g007360 Pisum sativum HOM05D003745 ORTHO05D004215 2.8e-26 121.7 93 73.1
Lj5g0022060 Lotus japonicus HOM05D003745 ORTHO05D004215 2.7e-24 115.2 93 67.7
Glyma.10G066400 Glycine max HOM05D003745 ORTHO05D004215 5.9e-24 114.0 93 67.7
Phvul.007G223101 Phaseolus vulgaris HOM05D003745 ORTHO05D004215 2.5e-22 108.6 93 61.3
Glyma.13G151500 Glycine max HOM05D003745 ORTHO05D004215 4.4e-19 97.8 93 59.1
Lalb_Chr02g0155181 Lupinus albus HOM05D003745 ORTHO05D004215 2.4e-17 92.0 96 59.4
QL07p040518 Quercus lobata HOM05D003745 ORTHO05D004215 5.4e-17 90.9 78 59.0
Thecc.05G081300 Theobroma cacao HOM05D003745 ORTHO05D004215 5.4e-17 90.9 96 56.2
arahy.Tifrunner.gnm1.ann1.AP4865 Arachis hypogaea HOM05D003745 ORTHO05D004215 4.5e-16 87.8 96 56.2
arahy.Tifrunner.gnm1.ann1.NCX3KP Arachis hypogaea HOM05D003745 ORTHO05D004215 4.5e-16 87.8 96 56.2
Dinv21253 Davidia involucrata HOM05D003745 ORTHO05D004215 2.3e-15 85.5 85 52.9
Duzib128G0603 Durio zibethinus HOM05D003745 ORTHO05D004215 5.0e-15 84.3 84 58.3
Gohir.D01G198200 Gossypium hirsutum HOM05D003745 ORTHO05D004215 5.0e-15 84.3 85 55.3
CiPaw.09G008800 Carya illinoinensis HOM05D003745 ORTHO05D004215 6.6e-15 84.0 86 53.5
Duzib106G0171 Durio zibethinus HOM05D003745 ORTHO05D004215 8.6e-15 83.6 83 56.6
Gorai.002G242400 Gossypium raimondii HOM05D003745 ORTHO05D004215 1.9e-14 82.4 85 54.1
TWI79G1201 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 2.5e-14 82.0 90 48.9
Duzib106G0076 Durio zibethinus HOM05D003745 ORTHO05D004215 5.5e-14 80.9 93 54.8
Gohir.A01G209100 Gossypium hirsutum HOM05D003745 ORTHO05D004215 5.5e-14 80.9 85 52.9
GSVIVG01033785001 Vitis vinifera HOM05D003745 ORTHO05D004215 5.5e-14 80.9 85 49.4
Dinv29425 Davidia involucrata HOM05D003745 ORTHO05D004215 9.5e-14 80.1 86 48.8
CSS0049961 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 1.2e-13 79.7 91 50.5
Dinv19830 Davidia involucrata HOM05D003745 ORTHO05D004215 1.2e-13 79.7 85 52.9
GSVIVG01031398001 Vitis vinifera HOM05D003745 ORTHO05D004215 1.2e-13 79.7 87 49.4
TWI75G0377 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 1.6e-13 79.3 90 47.8
Ciclev10013197m.g Citrus clementina HOM05D003745 ORTHO05D004215 2.8e-13 78.6 84 54.8
Potri.004G188200 Populus trichocarpa HOM05D003745 ORTHO05D004215 2.8e-13 78.6 93 48.4
Actinidia07207 Actinidia chinensis HOM05D003745 ORTHO05D004215 6.1e-13 77.4 91 50.5
CSS0050359 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 6.1e-13 77.4 91 46.2
Ciclev10003706m.g Citrus clementina HOM05D003745 ORTHO05D004215 6.1e-13 77.4 96 45.8
Actinidia24179 Actinidia chinensis HOM05D003745 ORTHO05D004215 1.0e-12 76.6 87 47.1
MSTRG.21061 Avicennia marina HOM05D003745 ORTHO05D004215 1.0e-12 76.6 84 48.8
CSS0006810 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 1.0e-12 76.6 89 47.2
Potri.009G148900 Populus trichocarpa HOM05D003745 ORTHO05D004215 1.0e-12 76.6 89 48.3
vmacro07360 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 1.0e-12 76.6 89 53.9
Cfa010081 Carpinus fangiana HOM05D003745 ORTHO05D004215 1.4e-12 76.3 84 51.2
FAN11G3796 Fragaria x ananassa HOM05D003745 ORTHO05D004215 1.8e-12 75.9 86 48.8
RcHm_v2.0_Chr5g0055241 Rosa chinensis HOM05D003745 ORTHO05D004215 1.8e-12 75.9 85 49.4
CiPaw.10G005500 Carya illinoinensis HOM05D003745 ORTHO05D004215 2.3e-12 75.5 90 48.9
FAN21G0140 Fragaria x ananassa HOM05D003745 ORTHO05D004215 3.0e-12 75.1 86 48.8
Cc01_g09790 Coffea canephora HOM05D003745 ORTHO05D004215 4.0e-12 74.7 95 46.3
Gorai.006G109700 Gossypium raimondii HOM05D003745 ORTHO05D004215 4.0e-12 74.7 85 45.9
TAR369G1123 Trochodendron aralioides HOM05D003745 ORTHO05D004215 4.0e-12 74.7 90 48.9
TAR636G1780 Trochodendron aralioides HOM05D003745 ORTHO05D004215 4.0e-12 74.7 62 58.1
Cc06_g05290 Coffea canephora HOM05D003745 ORTHO05D004215 5.2e-12 74.3 82 54.9
FvH4_3g29900 Fragaria vesca HOM05D003745 ORTHO05D004215 6.8e-12 73.9 86 47.7
MD11G1157500 Malus domestica HOM05D003745 ORTHO05D004215 8.9e-12 73.6 86 46.5
Thecc.09G291500 Theobroma cacao HOM05D003745 ORTHO05D004215 8.9e-12 73.6 87 46.0
Duzib093G0672 Durio zibethinus HOM05D003745 ORTHO05D004215 1.2e-11 73.2 85 50.6
Gohir.D07G111300 Gossypium hirsutum HOM05D003745 ORTHO05D004215 1.5e-11 72.8 84 48.8
Nn2g14004 Nelumbo nucifera HOM05D003745 ORTHO05D004215 1.5e-11 72.8 89 51.7
Gohir.A09G093200 Gossypium hirsutum HOM05D003745 ORTHO05D004215 2.0e-11 72.4 86 45.3
Nitab4.5_0000663g0130 Nicotiana tabacum HOM05D003745 ORTHO05D004215 2.0e-11 72.4 84 44.0
Rhsim13G0105100 Rhododendron simsii HOM05D003745 ORTHO05D004215 2.0e-11 72.4 89 51.7
CiPaw.13G141100 Carya illinoinensis HOM05D003745 ORTHO05D004215 2.6e-11 72.0 90 48.9
DCAR_006146 Daucus carota HOM05D003745 ORTHO05D004215 2.6e-11 72.0 83 44.6
Rhsim03G0081200 Rhododendron simsii HOM05D003745 ORTHO05D004215 2.6e-11 72.0 88 48.9
Duzib150G0771 Durio zibethinus HOM05D003745 ORTHO05D004215 3.4e-11 71.6 84 46.4
PGSC0003DMG400002682 Solanum tuberosum HOM05D003745 ORTHO05D004215 3.4e-11 71.6 83 48.2
FAN16G1639 Fragaria x ananassa HOM05D003745 ORTHO05D004215 4.4e-11 71.2 86 46.5
Gohir.D09G093000 Gossypium hirsutum HOM05D003745 ORTHO05D004215 4.4e-11 71.2 85 43.5
Peaxi162Scf00433g00025 Petunia axillaris HOM05D003745 ORTHO05D004215 4.4e-11 71.2 87 49.4
CiPaw.14G103500 Carya illinoinensis HOM05D003745 ORTHO05D004215 5.7e-11 70.9 87 46.0
Cpa.g.sc5.75 Carica papaya HOM05D003745 ORTHO05D004215 7.5e-11 70.5 86 51.2
COL.COLO4_19298 Corchorus olitorius HOM05D003745 ORTHO05D004215 7.5e-11 70.5 84 45.2
Manes.09G058940 Manihot esculenta HOM05D003745 ORTHO05D004215 7.5e-11 70.5 92 51.1
Atru.chr8.1631 Acer truncatum HOM05D003745 ORTHO05D004215 9.8e-11 70.1 87 51.7
QL01p013692 Quercus lobata HOM05D003745 ORTHO05D004215 9.8e-11 70.1 88 44.3
Sabra04G0127200 Salix brachista HOM05D003745 ORTHO05D004215 9.8e-11 70.1 92 43.5
Aqoxy2G01397 Aquilegia oxysepala HOM05D003745 ORTHO05D004215 1.3e-10 69.7 96 49.0
Ciclev10029683m.g Citrus clementina HOM05D003745 ORTHO05D004215 1.3e-10 69.7 86 51.2
vmacro03277 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 1.3e-10 69.7 90 47.8
vmacro23109 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 1.3e-10 69.7 90 47.8
Actinidia35448 Actinidia chinensis HOM05D003745 ORTHO05D004215 1.7e-10 69.3 87 49.4
Haze_23447 Corylus avellana HOM05D003745 ORTHO05D004215 1.7e-10 69.3 83 48.2
Gohir.A04G066114 Gossypium hirsutum HOM05D003745 ORTHO05D004215 1.7e-10 69.3 62 54.8
Sabra09G0117500 Salix brachista HOM05D003745 ORTHO05D004215 1.7e-10 69.3 66 54.5
Sopen09g003840 Solanum pennellii HOM05D003745 ORTHO05D004215 1.7e-10 69.3 75 50.7
Gohir.A07G107300 Gossypium hirsutum HOM05D003745 ORTHO05D004215 2.8e-10 68.6 84 47.6
Manes.11G157100 Manihot esculenta HOM05D003745 ORTHO05D004215 2.8e-10 68.6 87 46.0
Atru.chr3.3378 Acer truncatum HOM05D003745 ORTHO05D004215 3.7e-10 68.2 65 53.8
Actinidia37099 Actinidia chinensis HOM05D003745 ORTHO05D004215 3.7e-10 68.2 88 50.0
Gorai.001G119600 Gossypium raimondii HOM05D003745 ORTHO05D004215 3.7e-10 68.2 84 47.6
Phvul.005G127200 Phaseolus vulgaris HOM05D003745 ORTHO05D004215 4.9e-10 67.8 88 44.3
THA.LOC104799535 Tarenaya hassleriana HOM05D003745 ORTHO05D004215 4.9e-10 67.8 85 43.5
Nitab4.5_0006360g0020 Nicotiana tabacum HOM05D003745 ORTHO05D004215 6.3e-10 67.4 85 43.5
Carub.0005s1042 Capsella rubella HOM05D003745 ORTHO05D004215 1.1e-09 66.6 87 36.8
Carub.0015s0003 Capsella rubella HOM05D003745 ORTHO05D004215 1.1e-09 66.6 87 36.8
Glyma.12G181700 Glycine max HOM05D003745 ORTHO05D004215 1.1e-09 66.6 86 44.2
PSO339G5919 Papaver somniferum HOM05D003745 ORTHO05D004215 1.1e-09 66.6 92 43.5
PSO384G0932 Papaver somniferum HOM05D003745 ORTHO05D004215 1.1e-09 66.6 92 43.5
SalBow6G4256 Salvia bowleyana HOM05D003745 ORTHO05D004215 1.1e-09 66.6 85 45.9
TWI77G0164 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 1.1e-09 66.6 88 52.3
Duzib168G0884 Durio zibethinus HOM05D003745 ORTHO05D004215 1.4e-09 66.2 84 41.7
Gohir.A01G209200 Gossypium hirsutum HOM05D003745 ORTHO05D004215 1.4e-09 66.2 85 48.2
Oeu040536.1 Olea europaea HOM05D003745 ORTHO05D004215 1.4e-09 66.2 84 48.8
Actinidia11335 Actinidia chinensis HOM05D003745 ORTHO05D004215 1.8e-09 65.9 84 46.4
Manes.08G021100 Manihot esculenta HOM05D003745 ORTHO05D004215 2.4e-09 65.5 67 55.2
EL10Ac9g21084 Beta vulgaris HOM05D003745 ORTHO05D004215 3.1e-09 65.1 90 45.6
FvH4_6g17920 Fragaria vesca HOM05D003745 ORTHO05D004215 3.1e-09 65.1 91 45.1
FAN14G5394 Fragaria x ananassa HOM05D003745 ORTHO05D004215 3.1e-09 65.1 91 45.1
Lj3g0011252 Lotus japonicus HOM05D003745 ORTHO05D004215 3.1e-09 65.1 86 45.3
FAN05G2107 Fragaria x ananassa HOM05D003745 ORTHO05D004215 4.1e-09 64.7 91 45.1
FAN05G2814 Fragaria x ananassa HOM05D003745 ORTHO05D004215 4.1e-09 64.7 91 45.1
HanXRQChr13g0396991 Helianthus annuus HOM05D003745 ORTHO05D004215 4.1e-09 64.7 95 45.3
MD14G1016200 Malus domestica HOM05D003745 ORTHO05D004215 4.1e-09 64.7 86 51.2
CANSAT80G1673 Cannabis sativa HOM05D003745 ORTHO05D004215 5.4e-09 64.3 97 43.3
Gohir.D01G198300 Gossypium hirsutum HOM05D003745 ORTHO05D004215 5.4e-09 64.3 86 50.0
RcHm_v2.0_Chr3g0472171 Rosa chinensis HOM05D003745 ORTHO05D004215 5.4e-09 64.3 91 47.3
TAR633G1338 Trochodendron aralioides HOM05D003745 ORTHO05D004215 5.4e-09 64.3 62 53.2
Sp5g16440 Schrenkiella parvula HOM05D003745 ORTHO05D004215 7.0e-09 63.9 85 38.8
PGSC0003DMG400028173 Solanum tuberosum HOM05D003745 ORTHO05D004215 7.0e-09 63.9 77 49.4
vmacro23105 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 7.0e-09 63.9 64 51.6
arahy.Tifrunner.gnm1.ann1.X8LT49 Arachis hypogaea HOM05D003745 ORTHO05D004215 9.2e-09 63.5 91 40.7
CANSAT54G1542 Cannabis sativa HOM05D003745 ORTHO05D004215 9.2e-09 63.5 42 71.4
AT3G44735 Arabidopsis thaliana HOM05D003745 ORTHO05D004215 1.2e-08 63.2 87 40.2
Peaxi162Scf00789g00618 Petunia axillaris HOM05D003745 ORTHO05D004215 1.2e-08 63.2 79 46.8
Hund00782 Selenicereus undatus HOM05D003745 ORTHO05D004215 1.2e-08 63.2 92 41.3
Sc12g0004160 Simmondsia chinensis HOM05D003745 ORTHO05D004215 1.2e-08 63.2 86 44.2
FAN02G0871 Fragaria x ananassa HOM05D003745 ORTHO05D004215 1.6e-08 62.8 37 73.0
PGR004G1125 Punica granatum HOM05D003745 ORTHO05D004215 1.6e-08 62.8 80 50.0
C09p73210 Brassica napus HOM05D003745 ORTHO05D004215 2.0e-08 62.4 66 47.0
BolC9t60056H Brassica oleracea HOM05D003745 ORTHO05D004215 2.0e-08 62.4 66 47.0
MD12G1018200 Malus domestica HOM05D003745 ORTHO05D004215 2.0e-08 62.4 89 47.2
Prupe.7G116900 Prunus persica HOM05D003745 ORTHO05D004215 2.0e-08 62.4 48 62.5
C01p34270 Brassica napus HOM05D003745 ORTHO05D004215 2.7e-08 62.0 83 38.6
BolC1t03395H Brassica oleracea HOM05D003745 ORTHO05D004215 2.7e-08 62.0 83 38.6
CARHR151430 Cardamine hirsuta HOM05D003745 ORTHO05D004215 2.7e-08 62.0 50 52.0
arahy.Tifrunner.gnm1.ann1.T88YYN Arachis hypogaea HOM05D003745 ORTHO05D004215 3.5e-08 61.6 91 39.6
FAN09G1254 Fragaria x ananassa HOM05D003745 ORTHO05D004215 3.5e-08 61.6 91 44.0
PSO339G1716 Papaver somniferum HOM05D003745 ORTHO05D004215 3.5e-08 61.6 93 47.3
ECA233G0462 Erigeron canadensis HOM05D003745 ORTHO05D004215 4.5e-08 61.2 88 46.6
Eucgr.A01541 Eucalyptus grandis HOM05D003745 ORTHO05D004215 4.5e-08 61.2 91 45.1
Glyma.13G319200 Glycine max HOM05D003745 ORTHO05D004215 4.5e-08 61.2 87 42.5
Nn6g35042 Nelumbo nucifera HOM05D003745 ORTHO05D004215 4.5e-08 61.2 43 62.8
Rhsim01G0208400 Rhododendron simsii HOM05D003745 ORTHO05D004215 4.5e-08 61.2 55 50.9
Gorai.002G242500 Gossypium raimondii HOM05D003745 ORTHO05D004215 5.9e-08 60.8 87 47.1
Solyc10g083580.2 Solanum lycopersicum HOM05D003745 ORTHO05D004215 5.9e-08 60.8 77 45.5
Lsat_1_v5_gn_6_41120 Lactuca sativa HOM05D003745 ORTHO05D004215 7.8e-08 60.5 44 61.4
A10p32390 Brassica napus HOM05D003745 ORTHO05D004215 1.0e-07 60.1 95 42.1
BraA10t45279Z Brassica rapa HOM05D003745 ORTHO05D004215 1.0e-07 60.1 95 42.1
SalBow3G0913 Salvia bowleyana HOM05D003745 ORTHO05D004215 1.0e-07 60.1 44 59.1
MSTRG.17729 Avicennia marina HOM05D003745 ORTHO05D004215 1.7e-07 59.3 95 37.9
Peaxi162Scf00110g02023 Petunia axillaris HOM05D003745 ORTHO05D004215 1.7e-07 59.3 88 42.0
TWI74G0799 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 1.7e-07 59.3 89 46.1
Nitab4.5_0010833g0010 Nicotiana tabacum HOM05D003745 ORTHO05D004215 2.9e-07 58.5 87 41.4
CARHR209590 Cardamine hirsuta HOM05D003745 ORTHO05D004215 3.9e-07 58.2 76 46.1
Thhalv10015130m.g Eutrema salsugineum HOM05D003745 ORTHO05D004215 3.9e-07 58.2 89 41.6
Medtr2g084855 Medicago truncatula HOM05D003745 ORTHO05D004215 3.9e-07 58.2 87 43.7
MD03G1134700 Malus domestica HOM05D003745 ORTHO05D004215 5.0e-07 57.8 87 42.5
Thhalv10002908m.g Eutrema salsugineum HOM05D003745 ORTHO05D004215 6.6e-07 57.4 37 64.9
PSO063G0377 Papaver somniferum HOM05D003745 ORTHO05D004215 6.6e-07 57.4 93 45.2
Peaxi162Scf00157g00066 Petunia axillaris HOM05D003745 ORTHO05D004215 8.6e-07 57.0 90 40.0
Sopen06g031010 Solanum pennellii HOM05D003745 ORTHO05D004215 8.6e-07 57.0 41 58.5
Carub.0006s0262 Capsella rubella HOM05D003745 ORTHO05D004215 1.1e-06 56.6 64 48.4
Eucgr.B03895 Eucalyptus grandis HOM05D003745 ORTHO05D004215 1.1e-06 56.6 90 46.7
Solyc11g066880.2 Solanum lycopersicum HOM05D003745 ORTHO05D004215 1.1e-06 56.6 88 46.6
Sopen10g033060 Solanum pennellii HOM05D003745 ORTHO05D004215 1.1e-06 56.6 77 45.5
AL5G22960 Arabidopsis lyrata HOM05D003745 ORTHO05D004215 1.5e-06 56.2 87 36.8
AL6G13230 Arabidopsis lyrata HOM05D003745 ORTHO05D004215 1.5e-06 56.2 88 39.8
Sp6g39010 Schrenkiella parvula HOM05D003745 ORTHO05D004215 1.5e-06 56.2 85 41.2
Solyc06g074540.4 Solanum lycopersicum HOM05D003745 ORTHO05D004215 1.5e-06 56.2 41 58.5
PGR102G0577 Punica granatum HOM05D003745 ORTHO05D004215 1.9e-06 55.8 90 45.6
CAN.G919.7 Capsicum annuum HOM05D003745 ORTHO05D004215 2.5e-06 55.5 91 39.6
Oeu001652.1 Olea europaea HOM05D003745 ORTHO05D004215 3.3e-06 55.1 88 38.6
PGSC0003DMG400007123 Solanum tuberosum HOM05D003745 ORTHO05D004215 3.3e-06 55.1 87 36.8
ATR0820G192 Amborella trichopoda HOM05D003745 ORTHO05D004215 4.3e-06 54.7 91 40.7
Sc12g0004180 Simmondsia chinensis HOM05D003745 ORTHO05D004215 4.3e-06 54.7 56 44.6
Sopen11g026590 Solanum pennellii HOM05D003745 ORTHO05D004215 5.6e-06 54.3 80 43.8
Nitab4.5_0000132g0150 Nicotiana tabacum HOM05D003745 ORTHO05D004215 7.3e-06 53.9 42 57.1
TPR.G32386 Trifolium pratense HOM05D003745 ORTHO05D004215 7.3e-06 53.9 87 44.8


User provided reference genes

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