Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G5645 Trifolium pratense HOM05D001548 ORTHO05D003922 4.1e-33 144.1 69 100.0
Phvul.006G190900 Phaseolus vulgaris HOM05D001548 ORTHO05D003922 3.1e-12 74.7 42 88.1
Medtr2g012380 Medicago truncatula HOM05D001548 ORTHO05D003922 9.0e-12 73.2 42 83.3
Medtr2g012420 Medicago truncatula HOM05D001548 ORTHO05D003922 9.0e-12 73.2 42 83.3
Medtr4g050710 Medicago truncatula HOM05D001548 ORTHO05D003922 9.0e-12 73.2 42 83.3
Medtr4g050760 Medicago truncatula HOM05D001548 ORTHO05D003922 9.0e-12 73.2 42 83.3
Psat1g207880 Pisum sativum HOM05D001548 ORTHO05D003922 9.0e-12 73.2 42 83.3
Aqoxy1G00822 Aquilegia oxysepala HOM05D001548 ORTHO05D003922 1.2e-11 72.8 42 83.3
Aqoxy1G02697 Aquilegia oxysepala HOM05D001548 ORTHO05D003922 1.2e-11 72.8 42 83.3
Aqoxy339s001 Aquilegia oxysepala HOM05D001548 ORTHO05D003922 1.2e-11 72.8 42 83.3
Glyma.15G068300 Glycine max HOM05D001548 ORTHO05D003922 1.2e-11 72.8 42 83.3
arahy.Tifrunner.gnm1.ann1.B92LJH Arachis hypogaea HOM05D001548 ORTHO05D003922 1.5e-11 72.4 42 83.3
arahy.Tifrunner.gnm1.ann1.K5KWWW Arachis hypogaea HOM05D001548 ORTHO05D003922 1.5e-11 72.4 42 83.3
VMungo0540G2381 Vigna mungo HOM05D001548 ORTHO05D003922 2.0e-11 72.0 42 83.3
Oeu053926.1 Olea europaea HOM05D001548 ORTHO05D003922 2.6e-11 71.6 42 81.0
Oeu053927.1 Olea europaea HOM05D001548 ORTHO05D003922 2.6e-11 71.6 42 81.0
Lj6g0026396 Lotus japonicus HOM05D001548 ORTHO05D003922 3.4e-11 71.2 42 78.6
Ca_00270_v3 Cicer arietinum L. HOM05D001548 ORTHO05D003922 4.5e-11 70.9 42 81.0
Ca_00271_v3 Cicer arietinum L. HOM05D001548 ORTHO05D003922 4.5e-11 70.9 42 81.0
Gohir.D10G020600 Gossypium hirsutum HOM05D001548 ORTHO05D003922 5.8e-11 70.5 42 73.8
Gorai.011G021700 Gossypium raimondii HOM05D001548 ORTHO05D003922 5.8e-11 70.5 42 73.8
SGA_v2.0_scaffold7G03963 Striga asiatica HOM05D001548 ORTHO05D003922 5.8e-11 70.5 41 82.9
Gohir.A10G019800 Gossypium hirsutum HOM05D001548 ORTHO05D003922 1.3e-10 69.3 42 71.4
Manes.16G022100 Manihot esculenta HOM05D001548 ORTHO05D003922 1.3e-10 69.3 41 80.5
unitig_748.g7573 Utricularia gibba HOM05D001548 ORTHO05D003922 1.7e-10 68.9 42 78.6
CANSAT56G2247 Cannabis sativa HOM05D001548 ORTHO05D003922 2.2e-10 68.6 41 78.0
Migut.M01197 Erythranthe guttata HOM05D001548 ORTHO05D003922 2.9e-10 68.2 42 76.2
Lalb_Chr20g0122221 Lupinus albus HOM05D001548 ORTHO05D003922 2.9e-10 68.2 41 78.0
Nn1g06719 Nelumbo nucifera HOM05D001548 ORTHO05D003922 2.9e-10 68.2 42 78.6
Peaxi162Scf00527g00322 Petunia axillaris HOM05D001548 ORTHO05D003922 2.9e-10 68.2 42 78.6
Thecc.06G196700 Theobroma cacao HOM05D001548 ORTHO05D003922 2.9e-10 68.2 42 71.4
TAR626G1601 Trochodendron aralioides HOM05D001548 ORTHO05D003922 2.9e-10 68.2 42 73.8
Zm00001eb258260 Zea mays HOM05D001548 ORTHO05D003922 2.9e-10 68.2 41 75.6
Duzib235G0785 Durio zibethinus HOM05D001548 ORTHO05D003922 3.8e-10 67.8 42 69.0
CiPaw.10G119700 Carya illinoinensis HOM05D001548 ORTHO05D003922 4.9e-10 67.4 42 78.6
Os02g0805600 Oryza sativa ssp. japonica HOM05D001548 ORTHO05D003922 4.9e-10 67.4 42 69.0
GSVIVG01005847001 Vitis vinifera HOM05D001548 ORTHO05D003922 4.9e-10 67.4 41 80.5
CAN.G1181.11 Capsicum annuum HOM05D001548 ORTHO05D003922 6.4e-10 67.0 41 80.5
COL.COLO4_31559 Corchorus olitorius HOM05D001548 ORTHO05D003922 6.4e-10 67.0 41 78.0
HanXRQChr17g0555731 Helianthus annuus HOM05D001548 ORTHO05D003922 6.4e-10 67.0 41 75.6
Nitab4.5_0003676g0090 Nicotiana tabacum HOM05D001548 ORTHO05D003922 6.4e-10 67.0 41 80.5
Solyc02g078940.3 Solanum lycopersicum HOM05D001548 ORTHO05D003922 6.4e-10 67.0 41 80.5
Sopen02g023750 Solanum pennellii HOM05D001548 ORTHO05D003922 6.4e-10 67.0 41 80.5
PGSC0003DMG400022418 Solanum tuberosum HOM05D001548 ORTHO05D003922 6.4e-10 67.0 41 80.5
TAR626G1284 Trochodendron aralioides HOM05D001548 ORTHO05D003922 6.4e-10 67.0 41 75.6
Zm00001eb307530 Zea mays HOM05D001548 ORTHO05D003922 6.4e-10 67.0 41 73.2
Actinidia05591 Actinidia chinensis HOM05D001548 ORTHO05D003922 8.4e-10 66.6 41 78.0
ECA234G0352 Erigeron canadensis HOM05D001548 ORTHO05D003922 1.1e-09 66.2 41 75.6
MD05G1323900 Malus domestica HOM05D001548 ORTHO05D003922 1.1e-09 66.2 42 73.8
PGR004G2268 Punica granatum HOM05D001548 ORTHO05D003922 1.1e-09 66.2 41 80.5
TWI63G1036 Tripterygium wilfordii HOM05D001548 ORTHO05D003922 1.4e-09 65.9 42 73.8
Nitab4.5_0001170g0200 Nicotiana tabacum HOM05D001548 ORTHO05D003922 1.9e-09 65.5 41 78.0
Zm00001eb178860 Zea mays HOM05D008270 ORTHO05D010684 1.9e-09 65.5 41 70.7
Ciclev10015925m.g Citrus clementina HOM05D001548 ORTHO05D003922 2.4e-09 65.1 42 73.8
MD12G1074500 Malus domestica HOM05D001548 ORTHO05D003922 2.4e-09 65.1 41 78.0
Sc17g0006490 Simmondsia chinensis HOM05D001548 ORTHO05D003922 2.4e-09 65.1 42 73.8
Zm00001eb191990 Zea mays HOM05D001548 ORTHO05D003922 2.4e-09 65.1 41 70.7
CARHR228260 Cardamine hirsuta HOM05D001548 ORTHO05D003922 3.2e-09 64.7 42 71.4
Cpa.g.sc27.108 Carica papaya HOM05D001548 ORTHO05D003922 3.2e-09 64.7 42 71.4
Lsat_1_v5_gn_4_57401 Lactuca sativa HOM05D001548 ORTHO05D003922 3.2e-09 64.7 41 73.2
Hma1.2p1_0144F.1_g064920 Hydrangea macrophylla HOM05D001548 ORTHO05D003922 4.2e-09 64.3 42 73.8
Hma1.2p1_0144F.1_g064936 Hydrangea macrophylla HOM05D001548 ORTHO05D003922 4.2e-09 64.3 42 73.8
Prupe.4G038700 Prunus persica HOM05D001548 ORTHO05D003922 4.2e-09 64.3 37 81.1
Actinidia01927 Actinidia chinensis HOM05D001548 ORTHO05D003922 5.4e-09 63.9 40 75.0
arahy.Tifrunner.gnm1.ann1.F566GJ Arachis hypogaea HOM05D001548 ORTHO05D003922 5.4e-09 63.9 41 75.6
CiPaw.10G119300 Carya illinoinensis HOM05D001548 ORTHO05D003922 5.4e-09 63.9 42 73.8
Gohir.D05G167300 Gossypium hirsutum HOM05D001548 ORTHO05D003922 5.4e-09 63.9 42 64.3
Gorai.009G172400 Gossypium raimondii HOM05D001548 ORTHO05D003922 5.4e-09 63.9 42 64.3
Lj1A1211G82 Lonicera japonica HOM05D001548 ORTHO05D003922 5.4e-09 63.9 41 75.6
Potri.004G036100 Populus trichocarpa HOM05D001548 ORTHO05D003922 5.4e-09 63.9 41 75.6
QL05p081676 Quercus lobata HOM05D001548 ORTHO05D003922 5.4e-09 63.9 42 69.0
QL05p081681 Quercus lobata HOM05D001548 ORTHO05D003922 5.4e-09 63.9 42 69.0
DCAR_008065 Daucus carota HOM05D001548 ORTHO05D003922 7.1e-09 63.5 42 71.4
Manes.16G022000 Manihot esculenta HOM05D001548 ORTHO05D003922 7.1e-09 63.5 41 70.7
Rhsim13G0174500 Rhododendron simsii HOM05D001548 ORTHO05D003922 7.1e-09 63.5 42 71.4
Rhsim13G0174400 Rhododendron simsii HOM05D001548 ORTHO05D003922 9.3e-09 63.2 42 71.4
Hund23633 Selenicereus undatus HOM05D001548 ORTHO05D003922 9.3e-09 63.2 42 71.4
Dinv39801 Davidia involucrata HOM05D001548 ORTHO05D003922 1.2e-08 62.8 42 71.4
FvH4_3g04320 Fragaria vesca HOM05D001548 ORTHO05D003922 1.2e-08 62.8 42 69.0
FAN11G0633 Fragaria x ananassa HOM05D001548 ORTHO05D003922 1.2e-08 62.8 42 69.0
PSO541G1752 Papaver somniferum HOM05D001548 ORTHO05D003922 1.2e-08 62.8 41 70.7
PSO675G8570 Papaver somniferum HOM05D001548 ORTHO05D003922 1.2e-08 62.8 41 70.7
vmacro22278 Vaccinium macrocarpon HOM05D001548 ORTHO05D003922 1.2e-08 62.8 42 69.0
HPP92_013220 Vanilla planifolia HOM05D001548 ORTHO05D003922 1.2e-08 62.8 41 68.3
HPP92_013258 Vanilla planifolia HOM05D001548 ORTHO05D003922 1.2e-08 62.8 41 68.3
Duzib160G0467 Durio zibethinus HOM05D001548 ORTHO05D003922 1.6e-08 62.4 40 75.0
Hma1.2p1_0144F.1_g064910 Hydrangea macrophylla HOM05D001548 ORTHO05D003922 1.6e-08 62.4 42 71.4
Prupe.7G059300 Prunus persica HOM05D001548 ORTHO05D003922 1.6e-08 62.4 41 73.2
RcHm_v2.0_Chr5g0006721 Rosa chinensis HOM05D001548 ORTHO05D003922 1.6e-08 62.4 42 69.0
SalBow8G3959 Salvia bowleyana HOM05D001548 ORTHO05D003922 1.6e-08 62.4 42 69.0
COL.COLO4_31558 Corchorus olitorius HOM05D001548 ORTHO05D003922 2.1e-08 62.0 42 64.3
Haze_06554 Corylus avellana HOM05D001548 ORTHO05D003922 2.1e-08 62.0 41 73.2
Eucgr.D00699 Eucalyptus grandis HOM05D001548 ORTHO05D003922 2.1e-08 62.0 41 73.2
FAN21G4059 Fragaria x ananassa HOM05D001548 ORTHO05D003922 2.1e-08 62.0 42 69.0
GSVIVG01005848001 Vitis vinifera HOM05D001548 ORTHO05D003922 2.1e-08 62.0 41 73.2
TWI63G0457 Tripterygium wilfordii HOM05D001548 ORTHO05D003922 2.7e-08 61.6 42 69.0
Cc02_g12600 Coffea canephora HOM05D001548 ORTHO05D003922 3.5e-08 61.2 42 69.0
Prupe.7G059000 Prunus persica HOM05D001548 ORTHO05D003922 3.5e-08 61.2 41 73.2
RcHm_v2.0_Chr1g0318171 Rosa chinensis HOM05D001548 ORTHO05D003922 3.5e-08 61.2 42 66.7
Sabra11G0030900 Salix brachista HOM05D001548 ORTHO05D003922 3.5e-08 61.2 41 70.7
Atru.chr10.1984 Acer truncatum HOM05D001548 ORTHO05D003922 4.6e-08 60.8 41 70.7
Atru.chr10.1985 Acer truncatum HOM05D001548 ORTHO05D003922 4.6e-08 60.8 41 70.7
Atru.chr10.1989 Acer truncatum HOM05D001548 ORTHO05D003922 4.6e-08 60.8 41 73.2
FAN25G3513 Fragaria x ananassa HOM05D001548 ORTHO05D003922 4.6e-08 60.8 40 70.0
THA.LOC104812957 Tarenaya hassleriana HOM05D001548 ORTHO05D003922 4.6e-08 60.8 41 63.4
Aa31LG6G3590 Aethionema arabicum HOM05D001548 ORTHO05D003922 6.0e-08 60.5 42 64.3
Carub.0007s1983 Capsella rubella HOM05D001548 ORTHO05D003922 7.9e-08 60.1 42 64.3
Eucgr.A02651 Eucalyptus grandis HOM05D001548 ORTHO05D003922 7.9e-08 60.1 41 68.3
CAN.G1649.4 Capsicum annuum HOM05D001548 ORTHO05D003922 1.0e-07 59.7 42 73.8
Cfa000369 Carpinus fangiana HOM05D001548 ORTHO05D003922 1.0e-07 59.7 41 70.7
CDE05G1551 Ceratophyllum demersum HOM05D001548 ORTHO05D003922 1.0e-07 59.7 41 63.4
FAN25G1077 Fragaria x ananassa HOM05D001548 ORTHO05D003922 1.0e-07 59.7 42 64.3
RcHm_v2.0_Chr5g0006701 Rosa chinensis HOM05D001548 ORTHO05D003922 1.0e-07 59.7 42 66.7
Thecc.06G196800 Theobroma cacao HOM05D001548 ORTHO05D003922 1.0e-07 59.7 40 72.5
MSTRG.15920 Avicennia marina HOM05D001548 ORTHO05D003922 1.3e-07 59.3 42 66.7
CSS0049882 Camellia sinensis var. sinensis HOM05D001548 ORTHO05D003922 1.3e-07 59.3 41 68.3
Haze_06555 Corylus avellana HOM05D001548 ORTHO05D003922 1.3e-07 59.3 42 66.7
MELO3C004714.2 Cucumis melo HOM05D001548 ORTHO05D003922 1.3e-07 59.3 42 66.7
Gohir.D05G167400 Gossypium hirsutum HOM05D001548 ORTHO05D003922 1.3e-07 59.3 40 72.5
Gorai.009G172500 Gossypium raimondii HOM05D001548 ORTHO05D003922 1.3e-07 59.3 40 72.5
CsaV3_6G049820 Cucumis sativus L. HOM05D001548 ORTHO05D003922 1.8e-07 58.9 42 66.7
Gohir.A05G164400 Gossypium hirsutum HOM05D001548 ORTHO05D003922 1.8e-07 58.9 40 70.0
CDE11G1200 Ceratophyllum demersum HOM05D001548 ORTHO05D003922 2.3e-07 58.5 41 61.0
Eucgr.A02652 Eucalyptus grandis HOM05D001548 ORTHO05D003922 2.3e-07 58.5 41 68.3
RcHm_v2.0_Chr2g0162661 Rosa chinensis HOM05D001548 ORTHO05D003922 2.3e-07 58.5 42 64.3
Sed0014396 Sechium edule HOM05D001548 ORTHO05D003922 2.3e-07 58.5 41 68.3
AL7G32440 Arabidopsis lyrata HOM05D001548 ORTHO05D003922 3.0e-07 58.2 42 61.9
AUR62014739 Chenopodium quinoa HOM05D001548 ORTHO05D003922 3.0e-07 58.2 42 66.7
AUR62016918 Chenopodium quinoa HOM05D001548 ORTHO05D003922 3.0e-07 58.2 42 66.7
FAN11G1894 Fragaria x ananassa HOM05D001548 ORTHO05D003922 3.0e-07 58.2 42 61.9
AT4G21580 Arabidopsis thaliana HOM05D001548 ORTHO05D003922 3.9e-07 57.8 42 61.9
BcaNung02778 Brassica carinata HOM05D001548 ORTHO05D003922 3.9e-07 57.8 42 61.9
C01p15540 Brassica napus HOM05D001548 ORTHO05D003922 3.9e-07 57.8 42 61.9
BolC1t01506H Brassica oleracea HOM05D001548 ORTHO05D003922 3.9e-07 57.8 42 61.9
CARHR228270 Cardamine hirsuta HOM05D001548 ORTHO05D003922 3.9e-07 57.8 41 65.9
Cfa000368 Carpinus fangiana HOM05D001548 ORTHO05D003922 3.9e-07 57.8 42 66.7
ClCG01G022620 Citrullus lanatus HOM05D001548 ORTHO05D003922 3.9e-07 57.8 42 66.7
MELO3C007314.2 Cucumis melo HOM05D001548 ORTHO05D003922 3.9e-07 57.8 42 64.3
Thhalv10025712m.g Eutrema salsugineum HOM05D001548 ORTHO05D003922 3.9e-07 57.8 42 61.9
FvH4_3g04340 Fragaria vesca HOM05D001548 ORTHO05D003922 5.1e-07 57.4 42 61.9
Sed0019244 Sechium edule HOM05D001548 ORTHO05D003922 5.1e-07 57.4 42 66.7
EL10Ac8g20626 Beta vulgaris HOM05D001548 ORTHO05D003922 8.7e-07 56.6 42 64.3
A01p12900 Brassica napus HOM05D001548 ORTHO05D003922 8.7e-07 56.6 42 61.9
BraA01t01234Z Brassica rapa HOM05D001548 ORTHO05D003922 8.7e-07 56.6 42 61.9
FAN21G2301 Fragaria x ananassa HOM05D001548 ORTHO05D003922 8.7e-07 56.6 42 59.5
SEGI_40386 Sequoiadendron giganteum HOM05D001548 ORTHO05D003922 1.9e-06 55.5 41 58.5
ATR0693G362 Amborella trichopoda HOM05D001548 ORTHO05D003922 3.3e-06 54.7 42 61.9
SEGI_27377 Sequoiadendron giganteum HOM05D001548 ORTHO05D003922 3.3e-06 54.7 41 58.5
AL6G39070 Arabidopsis lyrata HOM05D001548 ORTHO05D003922 4.3e-06 54.3 41 58.5
Sp7g19720 Schrenkiella parvula HOM05D001548 ORTHO05D003922 9.6e-06 53.1 41 58.5


User provided reference genes

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