Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G5610 Trifolium pratense HOM05D002160 ORTHO05D002012 2.2e-95 352.4 201 100.0
Psat7g239160 Pisum sativum HOM05D002160 ORTHO05D002012 2.7e-24 116.3 73 87.7
Medtr4g021730 Medicago truncatula HOM05D002160 ORTHO05D002012 2.3e-23 113.2 73 86.3
Medtr4g021725 Medicago truncatula HOM05D002160 ORTHO05D002012 6.6e-23 111.7 73 84.9
Ca_03759_v3 Cicer arietinum L. HOM05D002160 ORTHO05D002012 7.3e-22 108.2 74 86.5
Ca_03760_v3 Cicer arietinum L. HOM05D002160 ORTHO05D002012 3.1e-20 102.8 83 75.9
Glyma.17G230500 Glycine max HOM05D002160 ORTHO05D002012 2.2e-18 96.7 73 75.3
Glyma.14G093100 Glycine max HOM05D002160 ORTHO05D002012 8.4e-18 94.7 73 75.3
CiPaw.10G145500 Carya illinoinensis HOM05D002160 ORTHO05D002012 5.1e-15 85.5 70 64.3
VMungo1383G3367 Vigna mungo HOM05D002160 ORTHO05D002012 8.7e-15 84.7 50 72.0
Phvul.008G101800 Phaseolus vulgaris HOM05D002160 ORTHO05D002012 7.3e-14 81.6 50 68.0
Lj3g0021630 Lotus japonicus HOM05D002160 ORTHO05D002012 3.6e-13 79.3 70 67.1
arahy.Tifrunner.gnm1.ann1.EU8JQM Arachis hypogaea HOM05D002160 ORTHO05D002012 4.8e-13 79.0 51 66.7
arahy.Tifrunner.gnm1.ann1.FFQQ4A Arachis hypogaea HOM05D002160 ORTHO05D002012 8.1e-13 78.2 51 66.7
Glyma.07G132000 Glycine max HOM05D002160 ORTHO05D002012 1.8e-12 77.0 50 64.0
Glyma.18G180800 Glycine max HOM05D002160 ORTHO05D002012 1.8e-12 77.0 50 64.0
Actinidia26465 Actinidia chinensis HOM05D002160 ORTHO05D002012 3.1e-12 76.3 49 73.5
QL07p048273 Quercus lobata HOM05D002160 ORTHO05D002012 4.0e-12 75.9 46 69.6
Lalb_Chr03g0042231 Lupinus albus HOM05D002160 ORTHO05D002012 5.3e-12 75.5 50 64.0
QL07p048278 Quercus lobata HOM05D002160 ORTHO05D002012 6.9e-12 75.1 43 72.1
TAR369G0024 Trochodendron aralioides HOM05D002160 ORTHO05D002012 9.0e-12 74.7 49 65.3
CiPaw.09G192500 Carya illinoinensis HOM05D002160 ORTHO05D002012 1.5e-11 73.9 50 64.0
Ca_07544_v3 Cicer arietinum L. HOM05D002160 ORTHO05D002012 2.0e-11 73.6 50 60.0
Lalb_Chr12g0210241 Lupinus albus HOM05D002160 ORTHO05D002012 2.0e-11 73.6 48 62.5
TPR.G23304 Trifolium pratense HOM05D002160 ORTHO05D002012 2.0e-11 73.6 50 64.0
Dinv37174 Davidia involucrata HOM05D002160 ORTHO05D002012 2.6e-11 73.2 48 62.5
TWI31G0095 Tripterygium wilfordii HOM05D002160 ORTHO05D002012 2.6e-11 73.2 89 43.8
Duzib106G1044 Durio zibethinus HOM05D002160 ORTHO05D002012 3.4e-11 72.8 49 67.3
Dinv35604 Davidia involucrata HOM05D002160 ORTHO05D002012 5.8e-11 72.0 48 64.6
SalBow3G1804 Salvia bowleyana HOM05D002160 ORTHO05D002012 7.6e-11 71.6 71 57.7
Thecc.05G039800 Theobroma cacao HOM05D002160 ORTHO05D002012 7.6e-11 71.6 58 53.4
CiPaw.10G145400 Carya illinoinensis HOM05D002160 ORTHO05D002012 9.9e-11 71.2 55 58.2
Oeu051930.1 Olea europaea HOM05D002160 ORTHO05D002012 1.3e-10 70.9 53 66.0
PGR004G1599 Punica granatum HOM05D002160 ORTHO05D002012 1.3e-10 70.9 50 60.0
arahy.Tifrunner.gnm1.ann1.02J1VT Arachis hypogaea HOM05D002160 ORTHO05D002012 1.7e-10 70.5 51 60.8
arahy.Tifrunner.gnm1.ann1.8X9BUY Arachis hypogaea HOM05D002160 ORTHO05D002012 1.7e-10 70.5 51 60.8
CSS0038374 Camellia sinensis var. sinensis HOM05D002160 ORTHO05D002012 1.7e-10 70.5 50 60.0
Duzib093G1046 Durio zibethinus HOM05D002160 ORTHO05D002012 1.7e-10 70.5 50 62.0
MD12G1141500 Malus domestica HOM05D002160 ORTHO05D002012 1.7e-10 70.5 49 65.3
CSS0042900 Camellia sinensis var. sinensis HOM05D002160 ORTHO05D002012 2.2e-10 70.1 50 60.0
Duzib128G1340 Durio zibethinus HOM05D002160 ORTHO05D002012 2.2e-10 70.1 50 60.0
MD04G1128900 Malus domestica HOM05D002160 ORTHO05D002012 2.2e-10 70.1 50 62.0
Oeu007792.1 Olea europaea HOM05D002160 ORTHO05D002012 2.2e-10 70.1 72 58.3
Oeu049244.1 Olea europaea HOM05D002160 ORTHO05D002012 2.2e-10 70.1 74 58.1
Haze_11621 Corylus avellana HOM05D002160 ORTHO05D002012 4.9e-10 68.9 50 60.0
Gorai.002G257700 Gossypium raimondii HOM05D002160 ORTHO05D002012 4.9e-10 68.9 50 56.0
Aqoxy4G02920 Aquilegia oxysepala HOM05D002160 ORTHO05D002012 6.4e-10 68.6 89 47.2
Psat3g140160 Pisum sativum HOM05D002160 ORTHO05D002012 6.4e-10 68.6 55 56.4
Gohir.A04G082400 Gossypium hirsutum HOM05D002160 ORTHO05D002012 8.4e-10 68.2 50 60.0
GSVIVG01034174001 Vitis vinifera HOM05D002160 ORTHO05D002012 8.4e-10 68.2 51 62.7
arahy.Tifrunner.gnm1.ann1.N3YTXC Arachis hypogaea HOM05D002160 ORTHO05D002012 1.1e-09 67.8 89 51.7
arahy.Tifrunner.gnm1.ann1.SS44WU Arachis hypogaea HOM05D002160 ORTHO05D002012 1.1e-09 67.8 89 53.9
CiPaw.14G068500 Carya illinoinensis HOM05D002160 ORTHO05D002012 1.1e-09 67.8 84 44.0
Gohir.D04G121400 Gossypium hirsutum HOM05D002160 ORTHO05D002012 1.1e-09 67.8 50 60.0
TAR633G1907 Trochodendron aralioides HOM05D002160 ORTHO05D002012 1.1e-09 67.8 48 64.6
Gohir.D01G211900 Gossypium hirsutum HOM05D002160 ORTHO05D002012 1.4e-09 67.4 84 50.0
Manes.08G079000 Manihot esculenta HOM05D002160 ORTHO05D002012 1.4e-09 67.4 50 60.0
Gohir.A13G224300 Gossypium hirsutum HOM05D002160 ORTHO05D002012 1.9e-09 67.0 89 50.6
Rhsim05G0192600 Rhododendron simsii HOM05D002160 ORTHO05D002012 1.9e-09 67.0 48 64.6
Atru.chr3.3902 Acer truncatum HOM05D002160 ORTHO05D002012 2.4e-09 66.6 43 62.8
MBI14_g20107_MAGBIO Magnolia biondii HOM05D002160 ORTHO05D002012 2.4e-09 66.6 46 63.0
Gohir.A01G222400 Gossypium hirsutum HOM05D002160 ORTHO05D002012 3.2e-09 66.2 50 54.0
Gorai.012G103800 Gossypium raimondii HOM05D002160 ORTHO05D002012 3.2e-09 66.2 50 58.0
Sabra06G0064700 Salix brachista HOM05D002160 ORTHO05D002012 3.2e-09 66.2 48 66.7
GSVIVG01027808001 Vitis vinifera HOM05D002160 ORTHO05D002012 3.2e-09 66.2 41 73.2
Gohir.D13G229100 Gossypium hirsutum HOM05D002160 ORTHO05D002012 5.4e-09 65.5 89 49.4
Gorai.013G260000 Gossypium raimondii HOM05D002160 ORTHO05D002012 5.4e-09 65.5 89 49.4
Atru.chr3.3900 Acer truncatum HOM05D002160 ORTHO05D002012 7.1e-09 65.1 51 56.9
Atru.chr3.3901 Acer truncatum HOM05D002160 ORTHO05D002012 7.1e-09 65.1 51 56.9
CiPaw.03G262000 Carya illinoinensis HOM05D002160 ORTHO05D002012 7.1e-09 65.1 73 47.9
Glyma.03G082100 Glycine max HOM05D002160 ORTHO05D002012 7.1e-09 65.1 73 63.0
Lsat_1_v5_gn_7_83340 Lactuca sativa HOM05D002160 ORTHO05D002012 7.1e-09 65.1 71 57.7
Actinidia05312 Actinidia chinensis HOM05D002160 ORTHO05D002012 9.3e-09 64.7 55 54.5
Haze_24095 Corylus avellana HOM05D002160 ORTHO05D002012 9.3e-09 64.7 70 57.1
Eucgr.A01262 Eucalyptus grandis HOM05D002160 ORTHO05D002012 1.2e-08 64.3 45 60.0
BcaC03g18434 Brassica carinata HOM05D002160 ORTHO05D002012 1.6e-08 63.9 137 33.6
COL.COLO4_19168 Corchorus olitorius HOM05D002160 ORTHO05D002012 1.6e-08 63.9 55 50.9
TWI79G1473 Tripterygium wilfordii HOM05D002160 ORTHO05D002012 1.6e-08 63.9 49 57.1
Lalb_Chr19g0125331 Lupinus albus HOM05D002160 ORTHO05D002012 2.1e-08 63.5 50 54.0
TWI31G0007 Tripterygium wilfordii HOM05D002160 ORTHO05D002012 2.1e-08 63.5 50 52.0
Cpa.g.sc228.19 Carica papaya HOM05D002160 ORTHO05D002012 2.7e-08 63.2 52 53.8
MD16G1208900 Malus domestica HOM05D002160 ORTHO05D002012 2.7e-08 63.2 77 45.5
Potri.006G085200 Populus trichocarpa HOM05D002160 ORTHO05D002012 4.6e-08 62.4 50 54.0
CAN.G326.9 Capsicum annuum HOM05D002160 ORTHO05D002012 6.0e-08 62.0 51 52.9
Dinv37173 Davidia involucrata HOM05D002160 ORTHO05D002012 6.0e-08 62.0 41 65.9
Medtr7g061018 Medicago truncatula HOM05D002160 ORTHO05D002012 6.0e-08 62.0 51 58.8
Nitab4.5_0006455g0010 Nicotiana tabacum HOM05D002160 ORTHO05D002012 6.0e-08 62.0 51 56.9
Phvul.L001645 Phaseolus vulgaris HOM05D002160 ORTHO05D002012 6.0e-08 62.0 68 63.2
Phvul.L001745 Phaseolus vulgaris HOM05D002160 ORTHO05D002012 6.0e-08 62.0 68 63.2
Cfa011500 Carpinus fangiana HOM05D002160 ORTHO05D002012 7.9e-08 61.6 69 56.5
Gohir.D13G229300 Gossypium hirsutum HOM05D002160 ORTHO05D002012 7.9e-08 61.6 89 48.3
Manes.08G079262 Manihot esculenta HOM05D002160 ORTHO05D002012 7.9e-08 61.6 53 54.7
TWI31G0178 Tripterygium wilfordii HOM05D002160 ORTHO05D002012 7.9e-08 61.6 50 50.0
CANSAT35G0429 Cannabis sativa HOM05D002160 ORTHO05D002012 1.0e-07 61.2 47 63.8
TPR.G5642 Trifolium pratense HOM05D002160 ORTHO05D002012 1.0e-07 61.2 82 56.1
Oeu011407.1 Olea europaea HOM05D002160 ORTHO05D002012 1.3e-07 60.8 53 56.6
Prupe.6G255100 Prunus persica HOM05D002160 ORTHO05D002012 1.3e-07 60.8 50 54.0
Aqoxy2G02118 Aquilegia oxysepala HOM05D002160 ORTHO05D002012 2.3e-07 60.1 47 59.6
Gohir.D11G345700 Gossypium hirsutum HOM05D002160 ORTHO05D002012 2.3e-07 60.1 74 52.7
MD06G1098000 Malus domestica HOM05D002160 ORTHO05D002012 2.3e-07 60.1 50 52.0
DCAR_005972 Daucus carota HOM05D002160 ORTHO05D002012 3.0e-07 59.7 120 32.5
Gorai.007G376000 Gossypium raimondii HOM05D002160 ORTHO05D002012 3.0e-07 59.7 74 52.7
Oeu036147.1 Olea europaea HOM05D002160 ORTHO05D002012 3.0e-07 59.7 51 56.9
Prupe.6G077900 Prunus persica HOM05D002160 ORTHO05D002012 3.0e-07 59.7 68 54.4
PGSC0003DMG402008909 Solanum tuberosum HOM05D002160 ORTHO05D002012 3.0e-07 59.7 52 53.8
Manes.08G079293 Manihot esculenta HOM05D002160 ORTHO05D002012 3.9e-07 59.3 50 50.0
Potri.001G239650 Populus trichocarpa HOM05D002160 ORTHO05D002012 5.1e-07 58.9 50 54.0
Sp6g40100 Schrenkiella parvula HOM05D002160 ORTHO05D002012 5.1e-07 58.9 88 38.6
Cc06_g02650 Coffea canephora HOM05D002160 ORTHO05D002012 6.7e-07 58.5 51 54.9
Manes.08G079200 Manihot esculenta HOM05D002160 ORTHO05D002012 6.7e-07 58.5 52 51.9
Potri.009G030800 Populus trichocarpa HOM05D002160 ORTHO05D002012 6.7e-07 58.5 52 50.0
Zm00001eb124800 Zea mays HOM05D002160 ORTHO05D002012 6.7e-07 58.5 46 56.5
CiPaw.13G094600 Carya illinoinensis HOM05D002160 ORTHO05D002012 8.7e-07 58.2 52 55.8
Solyc09g010800.5.1 Solanum lycopersicum HOM05D002160 ORTHO05D002012 8.7e-07 58.2 52 53.8
Sopen09g005530 Solanum pennellii HOM05D002160 ORTHO05D002012 8.7e-07 58.2 52 53.8
COL.COLO4_14799 Corchorus olitorius HOM05D002160 ORTHO05D002012 1.5e-06 57.4 48 52.1
Prupe.6G077800 Prunus persica HOM05D002160 ORTHO05D002012 1.5e-06 57.4 69 55.1
TWI53G0132 Tripterygium wilfordii HOM05D002160 ORTHO05D002012 1.5e-06 57.4 60 53.3
Peaxi162Scf00165g01210 Petunia axillaris HOM05D002160 ORTHO05D002012 2.5e-06 56.6 42 61.9
CsaV3_3G034920 Cucumis sativus L. HOM05D002160 ORTHO05D002012 3.3e-06 56.2 51 51.0
BcaC06g31984 Brassica carinata HOM05D002160 ORTHO05D002012 4.3e-06 55.8 88 38.6
Carub.0003s0850 Capsella rubella HOM05D002160 ORTHO05D002012 4.3e-06 55.8 47 55.3
MELO3C009260.2 Cucumis melo HOM05D002160 ORTHO05D002012 4.3e-06 55.8 51 51.0
Cpa.g.sc81.153 Carica papaya HOM05D002160 ORTHO05D002012 5.6e-06 55.5 46 47.8
Dinv17000 Davidia involucrata HOM05D002160 ORTHO05D002012 5.6e-06 55.5 52 51.9
Dinv42949 Davidia involucrata HOM05D002160 ORTHO05D002012 5.6e-06 55.5 52 51.9
Dinv43151 Davidia involucrata HOM05D002160 ORTHO05D002012 5.6e-06 55.5 52 51.9
ECA236G5071 Erigeron canadensis HOM05D002160 ORTHO05D002012 5.6e-06 55.5 56 44.6
Lj3g0006632 Lotus japonicus HOM05D002160 ORTHO05D002012 5.6e-06 55.5 82 52.4
Sed0014826 Sechium edule HOM05D002160 ORTHO05D002012 5.6e-06 55.5 51 51.0
Nn1g03685 Nelumbo nucifera HOM05D002160 ORTHO05D002012 7.4e-06 55.1 42 54.8
Os12g0570700 Oryza sativa ssp. japonica HOM05D002160 ORTHO05D002012 7.4e-06 55.1 47 59.6
PGR102G1600 Punica granatum HOM05D002160 ORTHO05D002012 7.4e-06 55.1 58 53.4
BcaC01g04233 Brassica carinata HOM05D002160 ORTHO05D002012 9.6e-06 54.7 89 40.4
Thhalv10015167m.g Eutrema salsugineum HOM05D002160 ORTHO05D002012 9.6e-06 54.7 88 37.5
SGA_v2.0_scaffold35G14233 Striga asiatica HOM05D000119 ORTHO05D000054 9.6e-06 54.7 51 49.0


User provided reference genes

Program Settings