Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G5593 Trifolium pratense HOM05D004998 ORTHO05D006104 2.0e-85 319.3 189 100.0
Medtr2g097480 Medicago truncatula HOM05D004998 ORTHO05D006104 8.6e-73 277.3 189 79.9
Psat5g285160 Pisum sativum HOM05D004998 ORTHO05D006104 6.8e-62 241.1 186 75.3
Glyma.13G337700 Glycine max HOM05D004998 ORTHO05D006104 3.9e-57 225.3 189 67.7
Phvul.L006843 Phaseolus vulgaris HOM05D004998 ORTHO05D006104 5.2e-54 214.9 191 65.4
Glyma.15G036800 Glycine max HOM05D004998 ORTHO05D006104 8.9e-54 214.2 190 64.7
VMungo1080G1028 Vigna mungo HOM05D004998 ORTHO05D006104 4.4e-53 211.8 191 66.0
Lj3g0014072 Lotus japonicus HOM05D004998 ORTHO05D006104 3.7e-52 208.8 191 63.9
Lalb_Chr03g0026531 Lupinus albus HOM05D004998 ORTHO05D006104 3.5e-50 202.2 186 62.4
arahy.Tifrunner.gnm1.ann1.JSTV8M Arachis hypogaea HOM05D004998 ORTHO05D006104 2.0e-45 186.4 191 60.2
arahy.Tifrunner.gnm1.ann1.AD2TJP Arachis hypogaea HOM05D004998 ORTHO05D006104 3.4e-45 185.7 191 59.7
Cfa011521 Carpinus fangiana HOM05D004998 ORTHO05D006104 3.1e-38 162.5 189 55.0
FvH4_3g36750 Fragaria vesca HOM05D004998 ORTHO05D006104 3.4e-37 159.1 190 53.7
Atru.chr3.3979 Acer truncatum HOM05D004998 ORTHO05D006104 4.4e-37 158.7 181 55.2
ClCG02G020020 Citrullus lanatus HOM05D004998 ORTHO05D006104 1.7e-36 156.8 183 51.9
FAN11G2014 Fragaria x ananassa HOM05D004998 ORTHO05D006104 3.8e-36 155.6 190 53.7
RcHm_v2.0_Chr5g0065711 Rosa chinensis HOM05D004998 ORTHO05D006104 8.4e-36 154.5 183 53.0
TWI75G0636 Tripterygium wilfordii HOM05D004998 ORTHO05D006104 1.9e-35 153.3 189 51.3
PGR102G0830 Punica granatum HOM05D004998 ORTHO05D006104 3.2e-35 152.5 189 52.9
CSS0033668 Camellia sinensis var. sinensis HOM05D004998 ORTHO05D006104 4.2e-35 152.1 190 52.1
CiPaw.14G067400 Carya illinoinensis HOM05D004998 ORTHO05D006104 5.4e-35 151.8 189 53.4
Ciclev10029345m.g Citrus clementina HOM05D004998 ORTHO05D006104 5.4e-35 151.8 181 53.0
Dinv17028 Davidia involucrata HOM05D004998 ORTHO05D006104 1.2e-34 150.6 181 51.4
Dinv42976 Davidia involucrata HOM05D004998 ORTHO05D006104 1.2e-34 150.6 181 51.4
Dinv43123 Davidia involucrata HOM05D004998 ORTHO05D006104 1.2e-34 150.6 181 51.4
CSS0032367 Camellia sinensis var. sinensis HOM05D004998 ORTHO05D006104 2.7e-34 149.4 181 54.1
QL01p031100 Quercus lobata HOM05D004998 ORTHO05D006104 2.7e-34 149.4 185 57.8
TWI79G0863 Tripterygium wilfordii HOM05D004998 ORTHO05D006104 3.5e-34 149.1 189 50.3
MD03G1088800 Malus domestica HOM05D004998 ORTHO05D006104 4.6e-34 148.7 189 50.8
Potri.009G033400 Populus trichocarpa HOM05D004998 ORTHO05D006104 6.0e-34 148.3 184 52.7
FAN21G1380 Fragaria x ananassa HOM05D004998 ORTHO05D006104 1.3e-33 147.1 195 51.3
CsaV3_6G016720 Cucumis sativus L. HOM05D004998 ORTHO05D006104 2.3e-33 146.4 183 50.8
Prupe.6G073200 Prunus persica HOM05D004998 ORTHO05D006104 2.3e-33 146.4 189 50.8
Hma1.2p1_0615F.1_g189810 Hydrangea macrophylla HOM05D004998 ORTHO05D006104 3.9e-33 145.6 189 47.1
MELO3C025903.2 Cucumis melo HOM05D004998 ORTHO05D006104 5.1e-33 145.2 183 50.3
MD11G1097800 Malus domestica HOM05D004998 ORTHO05D006104 5.1e-33 145.2 189 49.2
GSVIVG01024930001 Vitis vinifera HOM05D004998 ORTHO05D006104 5.1e-33 145.2 189 50.3
Eucgr.B02327 Eucalyptus grandis HOM05D004998 ORTHO05D006104 6.6e-33 144.8 190 48.9
CANSAT54G1321 Cannabis sativa HOM05D004998 ORTHO05D006104 1.9e-32 143.3 182 49.5
Lj1A149T62 Lonicera japonica HOM05D004998 ORTHO05D006104 1.9e-32 143.3 189 49.7
Sabra09G0023800 Salix brachista HOM05D004998 ORTHO05D006104 1.9e-32 143.3 181 52.5
vmacro03047 Vaccinium macrocarpon HOM05D004998 ORTHO05D006104 2.5e-32 142.9 188 48.4
TAR633G0520 Trochodendron aralioides HOM05D004998 ORTHO05D006104 4.3e-32 142.1 189 49.2
FAN16G3214 Fragaria x ananassa HOM05D004998 ORTHO05D006104 5.6e-32 141.7 208 49.0
TAR636G1117 Trochodendron aralioides HOM05D004998 ORTHO05D006104 7.3e-32 141.4 186 48.4
THA.LOC104810769 Tarenaya hassleriana HOM05D004998 ORTHO05D006104 4.8e-31 138.7 181 49.2
Gohir.A05G094300 Gossypium hirsutum HOM05D004998 ORTHO05D006104 1.4e-30 137.1 193 51.3
Nn2g11147 Nelumbo nucifera HOM05D004998 ORTHO05D006104 1.4e-30 137.1 191 46.6
Actinidia23927 Actinidia chinensis HOM05D004998 ORTHO05D006104 5.3e-30 135.2 181 49.2
Duzib168G2185 Durio zibethinus HOM05D004998 ORTHO05D006104 1.2e-29 134.0 193 50.3
Actinidia34418 Actinidia chinensis HOM05D004998 ORTHO05D006104 3.4e-29 132.5 181 49.2
Rhsim13G0078800 Rhododendron simsii HOM05D004998 ORTHO05D006104 3.4e-29 132.5 188 47.9
Cc01_g13080 Coffea canephora HOM05D004998 ORTHO05D006104 4.5e-29 132.1 182 45.6
Manes.01G171600 Manihot esculenta HOM05D004998 ORTHO05D006104 5.8e-29 131.7 184 47.8
Thecc.09G318900 Theobroma cacao HOM05D004998 ORTHO05D006104 5.8e-29 131.7 190 48.4
CiPaw.13G091800 Carya illinoinensis HOM05D004998 ORTHO05D006104 1.3e-28 130.6 180 48.3
COL.COLO4_18543 Corchorus olitorius HOM05D004998 ORTHO05D006104 3.8e-28 129.0 190 48.4
Duzib150G0269 Durio zibethinus HOM05D004998 ORTHO05D006104 3.8e-28 129.0 182 50.5
Hund18896 Selenicereus undatus HOM05D004998 ORTHO05D006104 8.4e-28 127.9 190 45.3
EL10Ac7g16043 Beta vulgaris HOM05D004998 ORTHO05D006104 3.2e-27 125.9 184 46.2
AUR62001761 Chenopodium quinoa HOM05D004998 ORTHO05D006104 7.1e-27 124.8 179 45.3
DCAR_005961 Daucus carota HOM05D004998 ORTHO05D006104 9.3e-27 124.4 183 47.5
C03p13690 Brassica napus HOM05D004998 ORTHO05D006104 1.6e-26 123.6 192 44.3
Nn2g13381 Nelumbo nucifera HOM05D004998 ORTHO05D006104 2.1e-26 123.2 189 45.5
AUR62009547 Chenopodium quinoa HOM05D004998 ORTHO05D006104 2.7e-26 122.9 180 45.0
SGA_v2.0_scaffold41G15739 Striga asiatica HOM05D004998 ORTHO05D006104 7.9e-26 121.3 183 46.4
MBI14_g12121_MAGBIO Magnolia biondii HOM05D004998 ORTHO05D006104 1.0e-25 120.9 192 43.8
HanXRQChr07g0197281 Helianthus annuus HOM05D004998 ORTHO05D006104 1.8e-25 120.2 189 47.1
Aqoxy1G00915 Aquilegia oxysepala HOM05D004998 ORTHO05D006104 3.0e-25 119.4 192 45.3
MSTRG.18567 Avicennia marina HOM05D004998 ORTHO05D006104 3.9e-25 119.0 181 48.6
Migut.D02075 Erythranthe guttata HOM05D004998 ORTHO05D006104 3.9e-25 119.0 181 45.9
AL8G35930 Arabidopsis lyrata HOM05D004998 ORTHO05D006104 5.1e-25 118.6 182 44.5
Sp6g21150 Schrenkiella parvula HOM05D004998 ORTHO05D006104 5.1e-25 118.6 182 43.4
Sed0008555 Sechium edule HOM05D004998 ORTHO05D006104 8.7e-25 117.9 183 56.8
Peaxi162Scf00092g01117 Petunia axillaris HOM05D004998 ORTHO05D006104 1.5e-24 117.1 182 43.4
Haze_24126 Corylus avellana HOM05D004998 ORTHO05D006104 1.9e-24 116.7 103 65.0
CARHR285830 Cardamine hirsuta HOM05D004998 ORTHO05D006104 2.5e-24 116.3 182 45.1
Nitab4.5_0000272g0050 Nicotiana tabacum HOM05D004998 ORTHO05D006104 2.5e-24 116.3 202 49.5
Lsat_1_v5_gn_9_23841 Lactuca sativa HOM05D004998 ORTHO05D006104 4.3e-24 115.5 188 44.1
Ah.08g219770 Amaranthus hybridus HOM05D004998 ORTHO05D006104 1.3e-23 114.0 187 42.8
Thhalv10014846m.g Eutrema salsugineum HOM05D004998 ORTHO05D006104 1.6e-23 113.6 182 45.1
Carub.0008s2013 Capsella rubella HOM05D004998 ORTHO05D006104 2.1e-23 113.2 182 45.1
Sopen06g001560 Solanum pennellii HOM05D004998 ORTHO05D006104 2.8e-23 112.8 190 42.6
PGSC0003DMG400002149 Solanum tuberosum HOM05D004998 ORTHO05D006104 2.8e-23 112.8 191 43.5
Solyc06g005600.3 Solanum lycopersicum HOM05D004998 ORTHO05D006104 3.7e-23 112.5 190 42.6
BcaB08g36256 Brassica carinata HOM05D004998 ORTHO05D006104 4.8e-23 112.1 191 40.8
Gohir.D05G094800 Gossypium hirsutum HOM05D004998 ORTHO05D006104 1.1e-22 110.9 192 43.2
ECA247G2861 Erigeron canadensis HOM05D004998 ORTHO05D006104 1.8e-22 110.2 192 42.7
HanXRQChr12g0374241 Helianthus annuus HOM05D004998 ORTHO05D006104 2.4e-22 109.8 189 45.0
AT5G59460 Arabidopsis thaliana HOM05D004998 ORTHO05D006104 3.1e-22 109.4 182 40.7
A02p07120 Brassica napus HOM05D004998 ORTHO05D006104 4.0e-22 109.0 172 45.9
Gorai.009G098000 Gossypium raimondii HOM05D004998 ORTHO05D006104 5.3e-22 108.6 192 43.2
BcaC03g14012 Brassica carinata HOM05D004998 ORTHO05D006104 9.0e-22 107.8 173 45.1
C02p12480 Brassica napus HOM05D004998 ORTHO05D006104 9.0e-22 107.8 173 45.1
BolC2t07348H Brassica oleracea HOM05D004998 ORTHO05D006104 9.0e-22 107.8 173 45.1
BraA02t05793Z Brassica rapa HOM05D004998 ORTHO05D006104 9.0e-22 107.8 173 45.1
SalBow3G1756 Salvia bowleyana HOM05D004998 ORTHO05D006104 9.0e-22 107.8 181 43.1
Aa31LG4G15620 Aethionema arabicum HOM05D004998 ORTHO05D006104 2.0e-21 106.7 182 40.1
Lalb_Chr01g0003571 Lupinus albus HOM05D004998 ORTHO05D006104 2.6e-21 106.3 134 50.7
A10p16680 Brassica napus HOM05D004998 ORTHO05D006104 3.4e-21 105.9 175 42.3
BraA10t43749Z Brassica rapa HOM05D004998 ORTHO05D006104 3.4e-21 105.9 175 42.3
HPP92_006623 Vanilla planifolia HOM05D004998 ORTHO05D006104 3.4e-21 105.9 109 54.1
Dinv06259 Davidia involucrata HOM05D004998 ORTHO05D006104 5.8e-21 105.1 103 59.2
Peaxi162Scf00122g01415 Petunia axillaris HOM05D004998 ORTHO05D006104 2.9e-20 102.8 181 42.5
ATR0559G067 Amborella trichopoda HOM05D004998 ORTHO05D006104 3.8e-20 102.4 182 41.8
Gohir.A03G043800 Gossypium hirsutum HOM05D004998 ORTHO05D006104 3.8e-20 102.4 170 47.1
Thhalv10002686m.g Eutrema salsugineum HOM05D004998 ORTHO05D006104 4.9e-20 102.1 188 41.5
Gohir.D03G123600 Gossypium hirsutum HOM05D004998 ORTHO05D006104 1.1e-19 100.9 177 47.5
Oeu053883.1 Olea europaea HOM05D004998 ORTHO05D006104 1.1e-19 100.9 176 39.2
BcaB05g22508 Brassica carinata HOM05D004998 ORTHO05D006104 5.5e-19 98.6 170 38.8
PSO339G2709 Papaver somniferum HOM05D004998 ORTHO05D006104 9.3e-19 97.8 195 38.5
Gorai.003G130300 Gossypium raimondii HOM05D004998 ORTHO05D006104 2.7e-18 96.3 177 46.3
C09p51870 Brassica napus HOM05D004998 ORTHO05D006104 1.8e-17 93.6 154 41.6
BolC3t13819H Brassica oleracea HOM05D004998 ORTHO05D006104 3.9e-17 92.4 152 39.5
CDE02G2808 Ceratophyllum demersum HOM05D004998 ORTHO05D006104 5.1e-17 92.0 193 37.8
Aa31LG1G11810 Aethionema arabicum HOM05D000959 ORTHO05D000775 1.5e-16 90.5 169 43.2
Zm00001eb124480 Zea mays HOM05D004998 ORTHO05D006104 1.5e-16 90.5 82 56.1
Cpa.g.sc81.121 Carica papaya HOM05D004998 ORTHO05D006104 2.5e-16 89.7 76 63.2
CDE08G1537 Ceratophyllum demersum HOM05D004998 ORTHO05D006104 4.3e-16 89.0 167 38.9
FAN11G1834 Fragaria x ananassa HOM05D004998 ORTHO05D006104 5.6e-16 88.6 177 39.0
FvH4_3g41460 Fragaria vesca HOM05D004998 ORTHO05D006104 1.3e-15 87.4 177 38.4
BcaC04g19766 Brassica carinata HOM05D004998 ORTHO05D006104 3.7e-15 85.9 182 37.9
Os01g0144600 Oryza sativa ssp. japonica HOM05D004998 ORTHO05D006104 3.7e-15 85.9 198 34.8
Nitab4.5_0006945g0010 Nicotiana tabacum HOM05D004998 ORTHO05D006104 4.8e-15 85.5 190 45.8
Nitab4.5_0007132g0030 Nicotiana tabacum HOM05D004998 ORTHO05D006104 4.8e-15 85.5 175 47.4
BcaB08g36255 Brassica carinata HOM05D004998 ORTHO05D006104 8.2e-15 84.7 179 38.0
BolC9t58049H Brassica oleracea HOM05D004998 ORTHO05D006104 2.4e-14 83.2 85 52.9
FAN21G1361 Fragaria x ananassa HOM05D004998 ORTHO05D006104 1.2e-13 80.9 177 37.3
FAN25G2664 Fragaria x ananassa HOM05D004998 ORTHO05D006104 1.3e-12 77.4 177 36.7
C03p13710 Brassica napus HOM05D004998 ORTHO05D006104 3.2e-11 72.8 142 40.1
Pp3c16_15780 Physcomitrium patens HOM05D004998 ORTHO05D006104 9.3e-11 71.2 84 50.0
Sc12g0001370 Simmondsia chinensis HOM05D004998 ORTHO05D006104 6.1e-10 68.6 140 35.7
arahy.Tifrunner.gnm1.ann1.MN3VL9 Arachis hypogaea HOM05D004998 ORTHO05D006104 3.0e-09 66.2 66 53.0
Mapoly0094s0023 Marchantia polymorpha HOM05D004998 ORTHO05D006104 3.0e-09 66.2 80 50.0
Oeu002429.1 Olea europaea HOM05D004998 ORTHO05D006104 1.9e-08 63.5 59 57.6
Medtr4g064210 Medicago truncatula HOM05D004998 ORTHO05D006104 3.3e-08 62.8 56 55.4
BcaB01g04577 Brassica carinata HOM05D004998 ORTHO05D006104 4.3e-08 62.4 151 37.7
BcaC01g06521 Brassica carinata HOM05D004998 ORTHO05D006104 4.3e-08 62.4 125 37.6
SEGI_30466 Sequoiadendron giganteum HOM05D004998 ORTHO05D006104 6.3e-07 58.5 131 32.1
FAN25G0408 Fragaria x ananassa HOM05D004998 ORTHO05D006104 4.1e-06 55.8 63 58.7


User provided reference genes

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