Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G5572 Trifolium pratense HOM05D003553 ORTHO05D005072 3.9e-87 324.7 159 100.0
Psat7g237240 Pisum sativum HOM05D003553 ORTHO05D005072 2.9e-50 202.2 103 96.1
Medtr4g076520 Medicago truncatula HOM05D003553 ORTHO05D005072 8.6e-50 200.7 105 93.3
arahy.Tifrunner.gnm1.ann1.9TI54L Arachis hypogaea HOM05D003553 ORTHO05D005072 1.9e-49 199.5 105 92.4
arahy.Tifrunner.gnm1.ann1.D3VYYS Arachis hypogaea HOM05D003553 ORTHO05D005072 1.9e-49 199.5 105 92.4
arahy.Tifrunner.gnm1.ann1.PUHY82 Arachis hypogaea HOM05D003553 ORTHO05D005072 1.9e-49 199.5 105 92.4
Glyma.01G104100 Glycine max HOM05D003553 ORTHO05D005072 1.9e-49 199.5 105 92.4
Phvul.010G011700 Phaseolus vulgaris HOM05D003553 ORTHO05D005072 2.1e-48 196.1 105 90.5
Glyma.03G070600 Glycine max HOM05D003553 ORTHO05D005072 6.2e-48 194.5 105 90.5
Lalb_Chr07g0192981 Lupinus albus HOM05D003553 ORTHO05D005072 3.1e-47 192.2 101 93.1
Atru.chr9.2308 Acer truncatum HOM05D003553 ORTHO05D005072 2.0e-46 189.5 105 86.7
Potri.012G070000 Populus trichocarpa HOM05D003553 ORTHO05D005072 3.4e-46 188.7 109 85.3
Ciclev10024236m.g Citrus clementina HOM05D003553 ORTHO05D005072 5.8e-46 188.0 105 86.7
MD06G1188700 Malus domestica HOM05D003553 ORTHO05D005072 2.9e-45 185.7 103 87.4
RcHm_v2.0_Chr7g0180661 Rosa chinensis HOM05D003553 ORTHO05D005072 8.3e-45 184.1 103 87.4
Manes.14G075200 Manihot esculenta HOM05D003553 ORTHO05D005072 2.4e-44 182.6 105 83.8
Cfa018984 Carpinus fangiana HOM05D003553 ORTHO05D005072 7.0e-44 181.0 103 86.4
Rhsim08G0159300 Rhododendron simsii HOM05D003553 ORTHO05D005072 2.0e-43 179.5 101 85.1
Cpa.g.sc17.207 Carica papaya HOM05D003553 ORTHO05D005072 2.7e-43 179.1 99 85.9
FvH4_5g15420 Fragaria vesca HOM05D003553 ORTHO05D005072 3.5e-43 178.7 97 89.7
FAN18G1891 Fragaria x ananassa HOM05D003553 ORTHO05D005072 3.5e-43 178.7 97 89.7
FAN04G2395 Fragaria x ananassa HOM05D003553 ORTHO05D005072 6.0e-43 177.9 99 87.9
FAN08G3028 Fragaria x ananassa HOM05D006304 ORTHO05D008584 6.0e-43 177.9 99 87.9
Lsat_1_v5_gn_3_22001 Lactuca sativa HOM05D003553 ORTHO05D005072 1.0e-42 177.2 98 86.7
Duzib084G0749 Durio zibethinus HOM05D003553 ORTHO05D005072 1.3e-42 176.8 108 79.6
ECA247G0496 Erigeron canadensis HOM05D003553 ORTHO05D005072 1.7e-42 176.4 98 86.7
Thecc.03G080100 Theobroma cacao HOM05D003553 ORTHO05D005072 1.7e-42 176.4 99 84.8
vmacro17511 Vaccinium macrocarpon HOM05D003553 ORTHO05D005072 1.7e-42 176.4 96 87.5
Eucgr.B00433 Eucalyptus grandis HOM05D003553 ORTHO05D005072 2.3e-42 176.0 104 82.7
Lj3g0022540 Lotus japonicus HOM05D003553 ORTHO05D005072 8.6e-42 174.1 89 94.4
Nitab4.5_0000269g0200 Nicotiana tabacum HOM05D003553 ORTHO05D005072 1.1e-41 173.7 128 67.2
Solyc06g071030.3 Solanum lycopersicum HOM05D003553 ORTHO05D005072 1.9e-41 172.9 100 82.0
Sopen06g027330 Solanum pennellii HOM05D003553 ORTHO05D005072 1.9e-41 172.9 100 82.0
PGSC0003DMG400033038 Solanum tuberosum HOM05D003553 ORTHO05D005072 1.9e-41 172.9 100 82.0
Peaxi162Scf00013g00033 Petunia axillaris HOM05D003553 ORTHO05D005072 2.5e-41 172.6 99 82.8
Nitab4.5_0009895g0030 Nicotiana tabacum HOM05D003553 ORTHO05D005072 3.3e-41 172.2 100 81.0
Nn3g17139 Nelumbo nucifera HOM05D003553 ORTHO05D005072 4.3e-41 171.8 100 80.0
Actinidia19057 Actinidia chinensis HOM05D003553 ORTHO05D005072 5.6e-41 171.4 94 87.2
TAR622G0338 Trochodendron aralioides HOM05D003553 ORTHO05D005072 7.3e-41 171.0 97 82.5
Medtr7g011400 Medicago truncatula HOM05D003553 ORTHO05D005072 9.5e-41 170.6 89 92.1
Gohir.A12G175340 Gossypium hirsutum HOM05D003553 ORTHO05D005072 1.2e-40 170.2 109 75.2
Gorai.009G355100 Gossypium raimondii HOM05D003553 ORTHO05D005072 1.2e-40 170.2 109 76.1
SGA_v2.0_scaffold25G10906 Striga asiatica HOM05D003553 ORTHO05D005072 1.2e-40 170.2 108 75.9
GSVIVG01008052001 Vitis vinifera HOM05D003553 ORTHO05D005072 1.6e-40 169.9 100 81.0
HanXRQChr14g0461161 Helianthus annuus HOM05D003553 ORTHO05D005072 2.8e-40 169.1 94 88.3
QL10p015682 Quercus lobata HOM05D003553 ORTHO05D005072 2.8e-40 169.1 143 64.3
Migut.I00129 Erythranthe guttata HOM05D003553 ORTHO05D005072 4.7e-40 168.3 100 81.0
CiPaw.11G039100 Carya illinoinensis HOM05D003553 ORTHO05D005072 1.1e-39 167.2 102 79.4
AUR62014518 Chenopodium quinoa HOM05D003553 ORTHO05D005072 1.4e-39 166.8 104 76.0
MSTRG.23042 Avicennia marina HOM05D003553 ORTHO05D005072 1.8e-39 166.4 99 77.8
Dinv19921 Davidia involucrata HOM05D003553 ORTHO05D005072 1.8e-39 166.4 89 89.9
Migut.I00130 Erythranthe guttata HOM05D003553 ORTHO05D005072 3.1e-39 165.6 109 74.3
Prupe.5G187000 Prunus persica HOM05D003553 ORTHO05D005072 3.1e-39 165.6 89 88.8
Gohir.D05G331200 Gossypium hirsutum HOM05D003553 ORTHO05D005072 4.0e-39 165.2 109 74.3
Gohir.A04G049100 Gossypium hirsutum HOM05D003553 ORTHO05D005072 6.8e-39 164.5 109 74.3
Sabra12G0049900 Salix brachista HOM05D003553 ORTHO05D005072 6.8e-39 164.5 93 84.9
SalBow5G1335 Salvia bowleyana HOM05D003553 ORTHO05D005072 8.9e-39 164.1 108 74.1
COL.COLO4_05913 Corchorus olitorius HOM05D003553 ORTHO05D005072 1.2e-38 163.7 130 66.2
CiPaw.12G016200 Carya illinoinensis HOM05D003553 ORTHO05D005072 1.5e-38 163.3 99 77.8
Ah.08g217620 Amaranthus hybridus HOM05D003553 ORTHO05D005072 3.4e-38 162.2 104 73.1
DCAR_032137 Daucus carota HOM05D003553 ORTHO05D005072 4.4e-38 161.8 93 84.9
ClCG06G016360 Citrullus lanatus HOM05D003553 ORTHO05D005072 7.5e-38 161.0 94 81.9
CsaV3_1G002150 Cucumis sativus L. HOM05D003553 ORTHO05D005072 9.8e-38 160.6 98 77.6
MELO3C017156.2 Cucumis melo HOM05D003553 ORTHO05D005072 1.3e-37 160.2 98 77.6
MELO3C029757.2 Cucumis melo HOM05D003553 ORTHO05D005072 1.3e-37 160.2 98 77.6
Sed0007559 Sechium edule HOM05D003553 ORTHO05D005072 1.3e-37 160.2 96 79.2
ATR1120G170 Amborella trichopoda HOM05D003553 ORTHO05D005072 2.2e-37 159.5 104 73.1
Sc23g0004450 Simmondsia chinensis HOM05D003553 ORTHO05D005072 2.2e-37 159.5 99 75.8
Oeu006476.1 Olea europaea HOM05D003553 ORTHO05D005072 2.4e-36 156.0 96 80.2
Cc04_g15460 Coffea canephora HOM05D003553 ORTHO05D005072 3.2e-36 155.6 99 73.7
unitig_750.g28498 Utricularia gibba HOM05D003553 ORTHO05D005072 4.1e-36 155.2 99 75.8
Lj9A460T56 Lonicera japonica HOM05D003553 ORTHO05D005072 7.1e-36 154.5 124 65.3
THA.LOC104812556 Tarenaya hassleriana HOM05D003553 ORTHO05D005072 3.5e-35 152.1 101 73.3
Aqoxy3G03280 Aquilegia oxysepala HOM05D003553 ORTHO05D005072 4.6e-35 151.8 89 80.9
EL10Ac1g00671 Beta vulgaris HOM05D003553 ORTHO05D005072 1.0e-34 150.6 89 78.7
THA.LOC104813869 Tarenaya hassleriana HOM05D003553 ORTHO05D005072 2.3e-34 149.4 105 71.4
CARHR019520 Cardamine hirsuta HOM05D003553 ORTHO05D005072 3.9e-34 148.7 95 76.8
Hund26920 Selenicereus undatus HOM05D003553 ORTHO05D005072 3.9e-34 148.7 89 79.8
Sp1g16850 Schrenkiella parvula HOM05D003553 ORTHO05D005072 5.1e-34 148.3 95 75.8
Carub.0001s1852 Capsella rubella HOM05D003553 ORTHO05D005072 8.6e-34 147.5 95 75.8
Thhalv10007243m.g Eutrema salsugineum HOM05D003553 ORTHO05D005072 1.1e-33 147.1 95 75.8
HPP92_007666 Vanilla planifolia HOM05D003553 ORTHO05D005072 1.1e-33 147.1 100 71.0
AT1G18870 Arabidopsis thaliana HOM05D003553 ORTHO05D005072 1.5e-33 146.7 101 71.3
Aa31LG7G3710 Aethionema arabicum HOM05D003553 ORTHO05D005072 1.9e-33 146.4 105 68.6
BraA02t06991Z Brassica rapa HOM05D003553 ORTHO05D005072 3.3e-33 145.6 105 68.6
CSS0033583 Camellia sinensis var. sinensis HOM05D003553 ORTHO05D005072 3.3e-33 145.6 120 65.0
BcaC03g15524 Brassica carinata HOM05D003553 ORTHO05D005072 4.3e-33 145.2 105 67.6
BcaC08g46921 Brassica carinata HOM05D003553 ORTHO05D005072 4.3e-33 145.2 97 73.2
A02p19540 Brassica napus HOM05D003553 ORTHO05D005072 4.3e-33 145.2 105 67.6
C02p32080 Brassica napus HOM05D003553 ORTHO05D005072 4.3e-33 145.2 105 67.6
BolC2t09243H Brassica oleracea HOM05D003553 ORTHO05D005072 4.3e-33 145.2 105 67.6
BraA06t24624Z Brassica rapa HOM05D003553 ORTHO05D005072 4.3e-33 145.2 95 73.7
FAN13G0685 Fragaria x ananassa HOM05D006304 ORTHO05D008584 4.3e-33 145.2 99 75.8
Sp5g29830 Schrenkiella parvula HOM05D003553 ORTHO05D005072 4.3e-33 145.2 97 73.2
BcaB02g06963 Brassica carinata HOM05D003553 ORTHO05D005072 5.6e-33 144.8 97 72.2
BcaC08g46898 Brassica carinata HOM05D003553 ORTHO05D005072 5.6e-33 144.8 97 72.2
A07p29260 Brassica napus HOM05D003553 ORTHO05D005072 5.6e-33 144.8 95 74.7
C06p48750 Brassica napus HOM05D003553 ORTHO05D005072 5.6e-33 144.8 97 72.2
BolC6t39911H Brassica oleracea HOM05D003553 ORTHO05D005072 5.6e-33 144.8 97 72.2
BraA07t30565Z Brassica rapa HOM05D003553 ORTHO05D005072 5.6e-33 144.8 95 74.7
BraA07t31582Z Brassica rapa HOM05D003553 ORTHO05D005072 5.6e-33 144.8 97 72.2
Thhalv10018346m.g Eutrema salsugineum HOM05D003553 ORTHO05D005072 5.6e-33 144.8 95 73.7
BcaB07g31908 Brassica carinata HOM05D003553 ORTHO05D005072 7.3e-33 144.4 102 70.6
C06p33160 Brassica napus HOM05D003553 ORTHO05D005072 7.3e-33 144.4 95 73.7
BolC6t38431H Brassica oleracea HOM05D003553 ORTHO05D005072 7.3e-33 144.4 95 73.7
Aa31LG4G4940 Aethionema arabicum HOM05D003553 ORTHO05D005072 1.2e-32 143.7 114 63.2
Carub.0002s2150 Capsella rubella HOM05D003553 ORTHO05D005072 1.6e-32 143.3 97 72.2
CARHR068010 Cardamine hirsuta HOM05D003553 ORTHO05D005072 1.6e-32 143.3 95 72.6
AL2G34600 Arabidopsis lyrata HOM05D003553 ORTHO05D005072 2.1e-32 142.9 97 71.1
AT1G74710 Arabidopsis thaliana HOM05D003553 ORTHO05D005072 2.1e-32 142.9 97 71.1
BcaC05g25790 Brassica carinata HOM05D003553 ORTHO05D005072 2.1e-32 142.9 95 72.6
BcaC07g38956 Brassica carinata HOM05D003553 ORTHO05D005072 2.1e-32 142.9 95 71.6
BolC5t30429H Brassica oleracea HOM05D003553 ORTHO05D005072 2.1e-32 142.9 95 72.6
BolC8t49526H Brassica oleracea HOM05D003553 ORTHO05D005072 2.1e-32 142.9 95 71.6
BcaB03g12949 Brassica carinata HOM05D003553 ORTHO05D005072 4.7e-32 141.7 95 71.6
Zm00001eb310840 Zea mays HOM05D003553 ORTHO05D005072 4.7e-32 141.7 95 68.4
CDE06G2389 Ceratophyllum demersum HOM05D003553 ORTHO05D005072 1.4e-31 140.2 99 67.7
C05p17290 Brassica napus HOM05D003553 ORTHO05D000856 2.3e-31 139.4 106 65.1
BcaB05g24870 Brassica carinata HOM05D003553 ORTHO05D005072 3.1e-31 139.0 100 71.0
A06p15100 Brassica napus HOM05D003553 ORTHO05D005072 4.0e-31 138.7 106 65.1
A08p30110 Brassica napus HOM05D003553 ORTHO05D005072 3.4e-30 135.6 89 71.9
C08p19030 Brassica napus HOM05D003553 ORTHO05D005072 3.4e-30 135.6 89 71.9
BraA08t34946Z Brassica rapa HOM05D003553 ORTHO05D005072 3.4e-30 135.6 89 71.9
AUR62038016 Chenopodium quinoa HOM05D003553 ORTHO05D005072 2.3e-26 122.9 104 63.5
SMO270G0001 Selaginella moellendorffii HOM05D003553 ORTHO05D005072 1.9e-25 119.8 89 67.4
SEGI_02517 Sequoiadendron giganteum HOM05D003553 ORTHO05D005072 7.3e-25 117.9 107 56.1
MD14G1195300 Malus domestica HOM05D003553 ORTHO05D005072 1.6e-24 116.7 84 70.2
Pp3c9_10620 Physcomitrium patens HOM05D003438 ORTHO05D004235 4.7e-24 115.2 130 48.5
MBI11_g14660_MAGBIO Magnolia biondii HOM05D003553 ORTHO05D005072 2.6e-22 109.4 58 84.5
AagrBONN_evm.TU.Sc2ySwM_228.2269 Anthoceros agrestis HOM05D003438 ORTHO05D004235 9.9e-22 107.5 156 40.4
Oeu048740.1 Olea europaea HOM05D003553 ORTHO05D005072 3.8e-21 105.5 80 67.5
Gorai.008G190900 Gossypium raimondii HOM05D003553 ORTHO05D005072 4.9e-21 105.1 58 82.8
Mapoly0195s0004 Marchantia polymorpha HOM05D003438 ORTHO05D004235 1.9e-20 103.2 170 37.6
MCO05G676 Micromonas commoda HOM05D003438 ORTHO05D004235 2.3e-18 96.3 95 50.5
C08p42930 Brassica napus HOM05D003553 ORTHO05D005072 5.1e-18 95.1 60 76.7
CBR_g48051 Chara braunii HOM05D003553 ORTHO05D005072 1.1e-17 94.0 179 34.1
Sc23g0004640 Simmondsia chinensis HOM05D003553 ORTHO05D005072 1.9e-17 93.2 64 73.4
PRCOL_00004179 Prasinoderma coloniale HOM05D003438 ORTHO05D004235 5.6e-17 91.7 129 41.1
BcaC07g41285 Brassica carinata HOM05D003553 ORTHO05D005072 2.4e-15 86.3 56 75.0
BolC8t51848H Brassica oleracea HOM05D003553 ORTHO05D005072 3.1e-15 85.9 56 75.0
Cre16.g659050 Chlamydomonas reinhardtii HOM05D003438 ORTHO05D004235 3.1e-15 85.9 153 36.6
HanXRQChr01g0006271 Helianthus annuus HOM05D003553 ORTHO05D005072 8.7e-10 67.8 48 77.1
SEGI_34733 Sequoiadendron giganteum HOM05D003438 ORTHO05D004235 1.9e-09 66.6 80 42.5
A09p59630 Brassica napus HOM05D003553 ORTHO05D005072 6.2e-08 61.6 49 65.3
VMungo0331G1422 Vigna mungo HOM05D003553 ORTHO05D005072 6.2e-08 61.6 34 85.3
TPR.G24814 Trifolium pratense HOM05D003553 ORTHO05D005072 8.1e-08 61.2 34 85.3


User provided reference genes

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