Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G5570 Trifolium pratense HOM05D006400 ORTHO05D008039 8.6e-154 547.7 479 100.0
Ca_22891_v3 Cicer arietinum L. HOM05D006400 ORTHO05D008039 4.8e-112 409.1 452 79.2
Medtr4g021220 Medicago truncatula HOM05D006400 ORTHO05D008039 1.1e-103 381.3 439 81.8
Lj3g0022967 Lotus japonicus HOM05D006400 ORTHO05D008039 3.3e-97 359.8 480 69.8
Phvul.011G001300 Phaseolus vulgaris HOM05D006400 ORTHO05D008039 2.7e-91 340.1 478 60.7
VMungo1127G0679 Vigna mungo HOM05D006400 ORTHO05D008039 1.4e-90 337.8 478 61.7
Lalb_Chr09g0323451 Lupinus albus HOM05D006400 ORTHO05D008039 6.7e-90 335.5 478 67.2
Glyma.15G265000 Glycine max HOM05D006400 ORTHO05D008039 1.7e-85 320.9 477 61.6
Glyma.08G238900 Glycine max HOM05D006400 ORTHO05D008039 2.2e-85 320.5 479 60.5
arahy.Tifrunner.gnm1.ann1.S7MQ4D Arachis hypogaea HOM05D006400 ORTHO05D008039 8.2e-80 302.0 472 62.5
TPR.G39692 Trifolium pratense HOM05D006400 ORTHO05D008039 2.0e-78 297.4 144 97.9
Haze_02836 Corylus avellana HOM05D006400 ORTHO05D008039 1.7e-56 224.6 474 57.8
Psat7g239440 Pisum sativum HOM05D006400 ORTHO05D008039 1.9e-52 211.1 413 51.3
Prupe.4G276000 Prunus persica HOM05D006400 ORTHO05D008039 7.3e-52 209.1 475 53.5
RcHm_v2.0_Chr7g0204361 Rosa chinensis HOM05D006400 ORTHO05D008039 1.6e-51 208.0 456 51.1
QL09p046276 Quercus lobata HOM05D006400 ORTHO05D008039 3.6e-51 206.8 468 58.1
Thecc.03G246700 Theobroma cacao HOM05D006400 ORTHO05D008039 6.2e-51 206.1 450 68.7
CiPaw.16G085600 Carya illinoinensis HOM05D006400 ORTHO05D008039 2.3e-50 204.1 461 65.9
ClCG06G010030 Citrullus lanatus HOM05D006400 ORTHO05D008039 2.0e-49 201.1 462 60.8
Dinv25846 Davidia involucrata HOM05D006400 ORTHO05D008039 1.7e-48 198.0 456 66.0
TAR628G0792 Trochodendron aralioides HOM05D006400 ORTHO05D008039 4.9e-48 196.4 463 60.3
FAN18G2780 Fragaria x ananassa HOM05D006400 ORTHO05D008039 6.4e-48 196.1 443 62.8
Ciclev10019985m.g Citrus clementina HOM05D006400 ORTHO05D008039 8.3e-48 195.7 446 61.9
FvH4_5g19630 Fragaria vesca HOM05D006400 ORTHO05D008039 2.4e-47 194.1 443 63.4
FAN08G3355 Fragaria x ananassa HOM05D006400 ORTHO05D008039 7.0e-47 192.6 443 60.5
MD04G1061400 Malus domestica HOM05D006400 ORTHO05D008039 2.7e-46 190.7 459 59.9
vmacro00015 Vaccinium macrocarpon HOM05D006400 ORTHO05D008039 4.6e-46 189.9 448 63.8
CSS0025678 Camellia sinensis var. sinensis HOM05D006400 ORTHO05D008039 6.0e-46 189.5 475 61.5
Lj3C13G5 Lonicera japonica HOM05D006400 ORTHO05D008039 7.8e-46 189.1 451 52.5
Atru.chr9.1257 Acer truncatum HOM05D006400 ORTHO05D008039 1.3e-45 188.3 463 59.2
MD06G1055200 Malus domestica HOM05D006400 ORTHO05D008039 1.3e-45 188.3 459 58.0
TWI15G0916 Tripterygium wilfordii HOM05D006400 ORTHO05D008039 2.3e-45 187.6 447 60.0
TAR628G0558 Trochodendron aralioides HOM05D006400 ORTHO05D008039 3.9e-45 186.8 428 61.7
GSVIVG01007151001 Vitis vinifera HOM05D006400 ORTHO05D008039 8.6e-45 185.7 445 67.6
Sed0010566 Sechium edule HOM05D006400 ORTHO05D008039 1.1e-44 185.3 461 56.8
CAN.G1312.18 Capsicum annuum HOM05D006400 ORTHO05D008039 1.9e-44 184.5 433 46.9
CsaV3_2G011310 Cucumis sativus L. HOM05D006400 ORTHO05D008039 6.2e-43 179.5 461 55.5
Gohir.D03G032200 Gossypium hirsutum HOM05D006400 ORTHO05D008039 6.2e-43 179.5 451 60.1
Gorai.003G033700 Gossypium raimondii HOM05D006400 ORTHO05D008039 1.1e-42 178.7 451 59.6
Sabra01G0124300 Salix brachista HOM05D006400 ORTHO05D008039 1.1e-42 178.7 472 52.5
Sabra01G0124400 Salix brachista HOM05D006400 ORTHO05D008039 1.1e-42 178.7 472 52.5
Sabra01G0124500 Salix brachista HOM05D006400 ORTHO05D008039 1.1e-42 178.7 472 52.5
Gorai.007G029300 Gossypium raimondii HOM05D006400 ORTHO05D008039 1.8e-42 177.9 445 60.7
Gohir.D11G026800 Gossypium hirsutum HOM05D006400 ORTHO05D008039 2.3e-42 177.6 474 58.2
Eucgr.E00397 Eucalyptus grandis HOM05D006400 ORTHO05D008039 6.8e-42 176.0 458 60.7
Potri.001G154901 Populus trichocarpa HOM05D006400 ORTHO05D008039 8.9e-42 175.6 459 54.9
HanXRQChr17g0533241 Helianthus annuus HOM05D006400 ORTHO05D008039 1.5e-41 174.9 445 66.1
Oeu052953.1 Olea europaea HOM05D006400 ORTHO05D008039 5.8e-41 172.9 437 54.0
CANSAT25G0610 Cannabis sativa HOM05D006400 ORTHO05D008039 6.4e-40 169.5 437 61.6
A06p45130 Brassica napus HOM05D006400 ORTHO05D008039 1.9e-39 167.9 477 40.5
BolC7t43646H Brassica oleracea HOM05D006400 ORTHO05D008039 1.9e-39 167.9 446 42.2
Gohir.A02G148300 Gossypium hirsutum HOM05D006400 ORTHO05D008039 2.4e-39 167.5 451 50.6
BraA06t27383Z Brassica rapa HOM05D006400 ORTHO05D008039 4.1e-39 166.8 462 41.1
Nitab4.5_0007283g0050 Nicotiana tabacum HOM05D006400 ORTHO05D008039 2.1e-38 164.5 439 59.5
BcaC06g31395 Brassica carinata HOM05D006400 ORTHO05D008039 2.7e-38 164.1 443 44.7
CARHR174040 Cardamine hirsuta HOM05D006400 ORTHO05D008039 4.6e-38 163.3 447 41.6
Solyc08g078280.1 Solanum lycopersicum HOM05D006400 ORTHO05D008039 1.0e-37 162.2 439 50.1
C07p31010 Brassica napus HOM05D006400 ORTHO05D008039 1.3e-37 161.8 446 41.5
Nitab4.5_0002601g0010 Nicotiana tabacum HOM05D006400 ORTHO05D008039 3.9e-37 160.2 476 46.6
Sp2g12080 Schrenkiella parvula HOM05D006400 ORTHO05D008039 5.1e-37 159.8 448 43.8
SHI09587 Sapria himalayana HOM05D006400 ORTHO05D008039 6.6e-37 159.5 440 42.3
Thhalv10000870m.g Eutrema salsugineum HOM05D006400 ORTHO05D008039 1.1e-36 158.7 451 40.1
PGR042G3373 Punica granatum HOM05D006400 ORTHO05D008039 1.1e-36 158.7 458 52.4
THA.LOC104810088 Tarenaya hassleriana HOM05D006400 ORTHO05D008039 1.9e-36 157.9 457 45.7
Ah.01g005640 Amaranthus hybridus HOM05D006400 ORTHO05D008039 3.3e-36 157.1 437 53.8
MSTRG.24505 Avicennia marina HOM05D006400 ORTHO05D008039 9.5e-36 155.6 459 49.7
EL10Ac5g12550 Beta vulgaris HOM05D006400 ORTHO05D008039 9.5e-36 155.6 447 54.1
MELO3C008512.2 Cucumis melo HOM05D006400 ORTHO05D008039 3.6e-35 153.7 461 52.9
Cc08_g12000 Coffea canephora HOM05D006400 ORTHO05D008039 6.2e-35 152.9 474 54.6
DCAR_009350 Daucus carota HOM05D006400 ORTHO05D008039 6.2e-35 152.9 391 56.0
Carub.0008s0042 Capsella rubella HOM05D006400 ORTHO05D008039 3.1e-34 150.6 446 40.4
Rhsim13G0212900 Rhododendron simsii HOM05D006400 ORTHO05D008039 4.0e-34 150.2 421 67.7
Aqoxy3G01604 Aquilegia oxysepala HOM05D006400 ORTHO05D008039 5.2e-34 149.8 467 60.8
Hma1.2p1_1196F.1_g266060 Hydrangea macrophylla HOM05D006400 ORTHO05D008039 5.2e-34 149.8 151 47.7
Hund12818 Selenicereus undatus HOM05D006400 ORTHO05D008039 5.2e-34 149.8 462 61.0
Migut.N02973 Erythranthe guttata HOM05D006400 ORTHO05D008039 6.8e-34 149.4 440 46.6
QL01p026672 Quercus lobata HOM05D006400 ORTHO05D008039 2.2e-32 144.4 139 49.6
Actinidia14396 Actinidia chinensis HOM05D006400 ORTHO05D008039 6.4e-32 142.9 137 50.4
Aa31csc39G30 Aethionema arabicum HOM05D006400 ORTHO05D008039 6.4e-32 142.9 461 42.5
PGSC0003DMG400039297 Solanum tuberosum HOM05D006400 ORTHO05D008039 6.4e-32 142.9 439 48.5
BcaC06g34259 Brassica carinata HOM05D006400 ORTHO05D008039 8.4e-32 142.5 142 48.6
PGR042G3592 Punica granatum HOM05D006400 ORTHO05D008039 8.4e-32 142.5 463 56.8
Nitab4.5_0010304g0010 Nicotiana tabacum HOM05D006400 ORTHO05D008039 1.4e-31 141.7 421 59.1
VMungo0251G3116 Vigna mungo HOM05D006400 ORTHO05D008039 2.4e-31 141.0 103 66.0
Manes.14G149022 Manihot esculenta HOM05D006400 ORTHO05D008039 4.1e-31 140.2 413 29.1
SGA_v2.0_scaffold54G19637 Striga asiatica HOM05D006400 ORTHO05D008039 7.1e-31 139.4 428 46.0
Manes.02G042000 Manihot esculenta HOM05D006400 ORTHO05D008039 2.7e-30 137.5 378 65.1
SalBow1G4333 Salvia bowleyana HOM05D006400 ORTHO05D008039 7.8e-30 136.0 134 48.5
AL8G10680 Arabidopsis lyrata HOM05D006400 ORTHO05D008039 1.3e-29 135.2 446 39.2
AT5G47360 Arabidopsis thaliana HOM05D006400 ORTHO05D008039 2.3e-29 134.4 429 43.6
Peaxi162Scf00017g03140 Petunia axillaris HOM05D006400 ORTHO05D008039 1.5e-28 131.7 429 54.3
Lsat_1_v5_gn_4_109281 Lactuca sativa HOM05D006400 ORTHO05D008039 2.5e-28 131.0 376 69.7
Sopen08g026780 Solanum pennellii HOM05D006400 ORTHO05D008039 2.5e-28 131.0 428 52.1
Nn4g24039 Nelumbo nucifera HOM05D006400 ORTHO05D008039 4.3e-28 130.2 145 44.1
Cfa011079 Carpinus fangiana HOM05D002637 ORTHO05D008095 1.1e-26 125.6 349 69.1
MBI10_g34776_MAGBIO Magnolia biondii HOM05D000931 ORTHO05D001924 3.1e-26 124.0 429 63.4
Cpa.g.sc89.62 Carica papaya HOM05D006400 ORTHO05D008039 8.9e-26 122.5 95 54.7
COL.COLO4_37104 Corchorus olitorius HOM05D006400 ORTHO05D008039 8.9e-26 122.5 375 67.2
Hma1.2p1_1196F.1_g266040 Hydrangea macrophylla HOM05D006400 ORTHO05D008039 1.3e-24 118.6 350 65.7
Peaxi162Scf00346g00056 Petunia axillaris HOM05D006400 ORTHO05D008039 1.3e-24 118.6 427 52.9
Duzib068G0402 Durio zibethinus HOM05D006400 ORTHO05D008039 1.7e-24 118.2 103 50.5
DCAR_028626 Daucus carota HOM05D006400 ORTHO05D008039 9.3e-23 112.5 107 49.5
Psat3g121000 Pisum sativum HOM05D003671 ORTHO05D004285 2.1e-22 111.3 61 88.5
Gohir.A11G027600 Gossypium hirsutum HOM05D006400 ORTHO05D008039 3.0e-21 107.5 110 49.1
ATR0697G201 Amborella trichopoda HOM05D006400 ORTHO05D008039 1.9e-20 104.8 144 41.7
Gohir.D02G148280 Gossypium hirsutum HOM05D006400 ORTHO05D008039 6.2e-19 99.8 89 51.7
FAN13G1818 Fragaria x ananassa HOM05D006400 ORTHO05D008039 1.4e-18 98.6 103 42.7
Gorai.005G166300 Gossypium raimondii HOM05D006400 ORTHO05D008039 1.8e-18 98.2 93 47.3
BcaC06g31398 Brassica carinata HOM05D006400 ORTHO05D008039 9.9e-17 92.4 108 44.4
Sc01g0008230 Simmondsia chinensis HOM05D006400 ORTHO05D008039 2.9e-16 90.9 110 40.0
Gohir.A03G125450 Gossypium hirsutum HOM05D006400 ORTHO05D008039 4.9e-16 90.1 89 49.4
Lsat_1_v5_gn_4_109201 Lactuca sativa HOM05D006400 ORTHO05D008039 5.4e-15 86.7 76 55.3
SEGI_21761 Sequoiadendron giganteum HOM05D006400 ORTHO05D008039 2.1e-14 84.7 120 35.8
AUR62018329 Chenopodium quinoa HOM05D006400 ORTHO05D008039 3.5e-14 84.0 87 43.7
Peaxi162Scf00242g00094 Petunia axillaris HOM05D006400 ORTHO05D008039 3.9e-13 80.5 79 48.1
ECA236G1262 Erigeron canadensis HOM05D006400 ORTHO05D008039 8.7e-13 79.3 88 46.6
AUR62035872 Chenopodium quinoa HOM05D000268 ORTHO05D008039 1.5e-12 78.6 98 40.8
AUR62035870 Chenopodium quinoa HOM05D006400 ORTHO05D008039 1.9e-12 78.2 98 40.8
PSO541G3795 Papaver somniferum HOM05D006400 ORTHO05D008039 9.6e-12 75.9 110 35.5
Aqoxy6G02102 Aquilegia oxysepala HOM05D006400 ORTHO05D008039 1.3e-11 75.5 100 39.0
Zm00001eb009290 Zea mays HOM05D006400 ORTHO05D008039 1.4e-10 72.0 109 29.4
Os03g0225300 Oryza sativa ssp. japonica HOM05D006400 ORTHO05D008039 6.9e-10 69.7 111 28.8
PSO675G7384 Papaver somniferum HOM05D006400 ORTHO05D008039 7.6e-09 66.2 110 31.8
ATR0787G037 Amborella trichopoda HOM05D006400 ORTHO05D008039 6.4e-08 63.2 71 45.1
Cc03_g13390 Coffea canephora HOM05D007128 ORTHO05D009059 1.1e-07 62.4 135 31.1
Lj6C61T6 Lonicera japonica HOM05D007128 ORTHO05D009059 2.4e-07 61.2 128 28.9
Sc16g0009730 Simmondsia chinensis HOM05D007128 ORTHO05D009059 3.2e-07 60.8 127 29.1
CSS0046383 Camellia sinensis var. sinensis HOM05D007128 ORTHO05D009059 5.5e-07 60.1 128 27.3
SalBow6G5229 Salvia bowleyana HOM05D007128 ORTHO05D009059 5.5e-07 60.1 146 28.8
CSS0003119 Camellia sinensis var. sinensis HOM05D007128 ORTHO05D009059 9.3e-07 59.3 128 27.3
CDE07G1249 Ceratophyllum demersum HOM05D007128 ORTHO05D009059 9.3e-07 59.3 127 30.7
MSTRG.26768 Avicennia marina HOM05D007128 ORTHO05D009059 1.6e-06 58.5 133 31.6
Haze_00709 Corylus avellana HOM05D007128 ORTHO05D009059 1.6e-06 58.5 128 27.3
Ca_16602_v3 Cicer arietinum L. HOM05D000424 ORTHO05D000355 2.1e-06 58.2 172 25.0
Prupe.1G186300 Prunus persica HOM05D007128 ORTHO05D009059 2.7e-06 57.8 128 26.6
TWI38G2031 Tripterygium wilfordii HOM05D007128 ORTHO05D009059 2.7e-06 57.8 128 27.3
Nn5g27627 Nelumbo nucifera HOM05D007128 ORTHO05D009059 3.5e-06 57.4 130 27.7
Cfa015785 Carpinus fangiana HOM05D007128 ORTHO05D009059 4.6e-06 57.0 128 27.3
Lalb_Chr11g0066161 Lupinus albus HOM05D000424 ORTHO05D000355 4.6e-06 57.0 126 27.8
FAN02G0500 Fragaria x ananassa HOM05D006596 ORTHO05D008497 6.0e-06 56.6 127 26.8
TAR633G0543 Trochodendron aralioides HOM05D007128 ORTHO05D009059 6.0e-06 56.6 133 31.6
Atru.chr3.1624 Acer truncatum HOM05D007128 ORTHO05D009059 7.9e-06 56.2 141 30.5
AUR62004993 Chenopodium quinoa HOM05D007128 ORTHO05D009059 7.9e-06 56.2 124 27.4
Dinv22679 Davidia involucrata HOM05D007128 ORTHO05D009059 7.9e-06 56.2 148 27.7
Oeu061587.1 Olea europaea HOM05D007128 ORTHO05D009059 7.9e-06 56.2 141 27.0


User provided reference genes

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