Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G5557 Trifolium pratense HOM05D004479 ORTHO05D005597 4.3e-263 911.0 535 100.0
Medtr5g013930 Medicago truncatula HOM05D004479 ORTHO05D005597 3.1e-237 825.1 545 91.2
arahy.Tifrunner.gnm1.ann1.HYUF3S Arachis hypogaea HOM05D004479 ORTHO05D005597 4.1e-213 745.0 523 84.1
arahy.Tifrunner.gnm1.ann1.SFLF9H Arachis hypogaea HOM05D004479 ORTHO05D005597 4.1e-213 745.0 523 84.1
Ca_21726_v3 Cicer arietinum L. HOM05D004479 ORTHO05D005597 5.0e-211 738.0 537 85.5
VMungo1080G0276 Vigna mungo HOM05D004479 ORTHO05D005597 5.2e-200 701.4 531 81.7
Glyma.12G188300 Glycine max HOM05D004479 ORTHO05D005597 4.9e-198 694.9 525 78.3
Phvul.005G185100 Phaseolus vulgaris HOM05D004479 ORTHO05D005597 6.8e-192 674.5 527 78.9
Ciclev10025265m.g Citrus clementina HOM05D004479 ORTHO05D005597 8.9e-192 674.1 572 72.2
Psat5g288040 Pisum sativum HOM05D004479 ORTHO05D005597 2.8e-185 652.5 436 89.0
Gohir.A01G221776 Gossypium hirsutum HOM05D004479 ORTHO05D005597 1.5e-183 646.7 558 72.6
Dinv09182 Davidia involucrata HOM05D004479 ORTHO05D005597 1.6e-180 636.7 538 74.2
QL05p084035 Quercus lobata HOM05D004479 ORTHO05D005597 2.7e-180 636.0 565 70.6
Lj3g0018425 Lotus japonicus HOM05D004479 ORTHO05D005597 1.0e-179 634.0 493 79.9
Gorai.010G142700 Gossypium raimondii HOM05D004479 ORTHO05D005597 4.3e-178 628.6 560 71.6
Prupe.1G049400 Prunus persica HOM05D004479 ORTHO05D005597 9.6e-178 627.5 545 72.1
RcHm_v2.0_Chr4g0395701 Rosa chinensis HOM05D004479 ORTHO05D005597 3.4e-175 619.0 567 69.5
CsaV3_3G030520 Cucumis sativus L. HOM05D004479 ORTHO05D005597 9.9e-175 617.5 555 67.6
Duzib192G0061 Durio zibethinus HOM05D004479 ORTHO05D005597 8.4e-174 614.4 522 72.4
MELO3C026710.2 Cucumis melo HOM05D004479 ORTHO05D005597 4.6e-172 608.6 550 68.7
Potri.010G253100 Populus trichocarpa HOM05D004479 ORTHO05D005597 7.8e-172 607.8 558 67.2
ClCG07G014640 Citrullus lanatus HOM05D004479 ORTHO05D005597 3.0e-171 605.9 531 69.5
TAR626G0959 Trochodendron aralioides HOM05D004479 ORTHO05D005597 3.9e-171 605.5 565 67.3
Ca_04816_v3 Cicer arietinum L. HOM05D004479 ORTHO05D005597 4.3e-170 602.1 535 74.6
Manes.06G177300 Manihot esculenta HOM05D004479 ORTHO05D005597 2.1e-169 599.7 570 69.3
MD16G1227300 Malus domestica HOM05D004479 ORTHO05D005597 2.8e-169 599.4 567 67.0
COL.COLO4_31168 Corchorus olitorius HOM05D004479 ORTHO05D005597 3.6e-169 599.0 523 72.7
Actinidia21882 Actinidia chinensis HOM05D004479 ORTHO05D005597 8.1e-169 597.8 546 67.9
CANSAT78G0411 Cannabis sativa HOM05D004479 ORTHO05D005597 2.6e-167 592.8 544 68.4
Thecc.06G058800 Theobroma cacao HOM05D004479 ORTHO05D005597 2.6e-167 592.8 553 68.7
GSVIVG01029540001 Vitis vinifera HOM05D004479 ORTHO05D005597 1.7e-166 590.1 543 67.0
Eucgr.J03177 Eucalyptus grandis HOM05D004479 ORTHO05D005597 6.4e-166 588.2 532 68.8
Gohir.A06G118600 Gossypium hirsutum HOM05D004479 ORTHO05D005597 2.7e-164 582.8 552 67.6
FvH4_4g04880 Fragaria vesca HOM05D004479 ORTHO05D005597 8.7e-163 577.8 552 67.6
Sed0022371 Sechium edule HOM05D004479 ORTHO05D005597 1.5e-162 577.0 525 68.4
PGR119G2289 Punica granatum HOM05D004479 ORTHO05D005597 1.3e-161 573.9 537 67.8
Sabra10G0196900 Salix brachista HOM05D004479 ORTHO05D005597 1.8e-160 570.1 654 55.8
FAN17G0751 Fragaria x ananassa HOM05D004479 ORTHO05D005597 5.3e-160 568.5 573 62.5
Atru.chr1.2695 Acer truncatum HOM05D004479 ORTHO05D005597 3.4e-159 565.8 564 65.6
Cc04_g00200 Coffea canephora HOM05D004479 ORTHO05D005597 4.5e-159 565.5 544 66.7
FAN22G0181 Fragaria x ananassa HOM05D004479 ORTHO05D005597 2.1e-156 556.6 509 67.2
Nitab4.5_0004918g0010 Nicotiana tabacum HOM05D004479 ORTHO05D005597 6.0e-156 555.1 546 65.9
MSTRG.10879 Avicennia marina HOM05D004479 ORTHO05D005597 3.0e-155 552.7 548 65.7
Solyc03g123960.3 Solanum lycopersicum HOM05D004479 ORTHO05D005597 1.5e-154 550.4 550 64.2
Nn7g37005 Nelumbo nucifera HOM05D004479 ORTHO05D005597 2.5e-154 549.7 559 65.1
Glyma.13G372700 Glycine max HOM05D004479 ORTHO05D005597 2.8e-153 546.2 431 80.5
TWI09G1491 Tripterygium wilfordii HOM05D004479 ORTHO05D005597 1.1e-152 544.3 489 67.3
RcHm_v2.0_Chr4g0395721 Rosa chinensis HOM05D004479 ORTHO05D005597 1.8e-152 543.5 489 70.8
Aqoxy7G02788 Aquilegia oxysepala HOM05D004479 ORTHO05D005597 2.4e-152 543.1 562 64.9
Migut.I01194 Erythranthe guttata HOM05D004479 ORTHO05D005597 1.2e-151 540.8 558 64.5
Sopen03g041690 Solanum pennellii HOM05D004479 ORTHO05D005597 2.6e-151 539.7 582 61.2
EL10Ac7g18162 Beta vulgaris HOM05D004479 ORTHO05D005597 7.6e-151 538.1 504 64.9
CSS0019442 Camellia sinensis var. sinensis HOM05D004479 ORTHO05D005597 7.6e-151 538.1 572 62.8
Nitab4.5_0002664g0040 Nicotiana tabacum HOM05D004479 ORTHO05D005597 7.6e-151 538.1 563 63.8
Cfa002151 Carpinus fangiana HOM05D004479 ORTHO05D005597 1.0e-150 537.7 484 69.2
HanXRQChr12g0359691 Helianthus annuus HOM05D004479 ORTHO05D005597 3.5e-148 529.3 539 63.8
CAN.G790.12 Capsicum annuum HOM05D004479 ORTHO05D005597 6.7e-147 525.0 533 63.8
THA.LOC104800314 Tarenaya hassleriana HOM05D004479 ORTHO05D005597 8.7e-147 524.6 571 60.6
Ah.15g094320 Amaranthus hybridus HOM05D004479 ORTHO05D005597 4.8e-145 518.8 536 64.2
Hma1.2p1_1111F.1_g258400 Hydrangea macrophylla HOM05D004479 ORTHO05D005597 1.1e-141 507.7 461 70.3
MBI13_g34036_MAGBIO Magnolia biondii HOM05D004479 ORTHO05D005597 1.1e-141 507.7 480 65.4
Oeu049641.1 Olea europaea HOM05D004479 ORTHO05D005597 5.5e-141 505.4 580 59.3
PSO170G2367 Papaver somniferum HOM05D004479 ORTHO05D005597 2.7e-140 503.1 567 61.2
Lsat_1_v5_gn_5_137281 Lactuca sativa HOM05D004479 ORTHO05D005597 7.9e-140 501.5 498 66.1
Hund18609 Selenicereus undatus HOM05D004479 ORTHO05D005597 3.9e-139 499.2 553 57.9
vmacro18747 Vaccinium macrocarpon HOM05D004479 ORTHO05D005597 1.9e-138 496.9 578 55.4
Sp2g14070 Schrenkiella parvula HOM05D004479 ORTHO05D005597 4.3e-138 495.7 551 60.8
ECA234G3188 Erigeron canadensis HOM05D001810 ORTHO05D005662 2.2e-137 493.4 498 63.1
PSO384G0383 Papaver somniferum HOM05D004479 ORTHO05D005597 3.4e-135 486.1 567 60.7
MBI13_g01743_MAGBIO Magnolia biondii HOM05D004479 ORTHO05D005597 5.0e-134 482.3 482 63.5
Rhsim08G0249800 Rhododendron simsii HOM05D004479 ORTHO05D005597 1.9e-133 480.3 546 57.9
Sc12g0011150 Simmondsia chinensis HOM05D004479 ORTHO05D005597 4.7e-132 475.7 533 58.9
PSO063G0217 Papaver somniferum HOM05D004479 ORTHO05D005597 6.1e-132 475.3 572 58.7
Hund18598 Selenicereus undatus HOM05D004479 ORTHO05D005597 3.0e-131 473.0 461 63.1
Aa31LG2G7330 Aethionema arabicum HOM05D004479 ORTHO05D005597 2.0e-130 470.3 516 57.0
AUR62001343 Chenopodium quinoa HOM05D004479 ORTHO05D005597 4.4e-130 469.2 525 56.0
unitig_748.g8028 Utricularia gibba HOM05D004479 ORTHO05D005597 4.4e-130 469.2 570 54.6
AT2G03070 Arabidopsis thaliana HOM05D004479 ORTHO05D005597 2.8e-129 466.5 534 58.8
Peaxi162Scf00038g02656 Petunia axillaris HOM05D004479 ORTHO05D005597 6.9e-128 461.8 542 54.2
Carub.0005s0192 Capsella rubella HOM05D004479 ORTHO05D005597 2.0e-127 460.3 536 61.2
CARHR213680 Cardamine hirsuta HOM05D004479 ORTHO05D005597 2.0e-127 460.3 553 59.7
Zm00001eb320420 Zea mays HOM05D004479 ORTHO05D005597 2.0e-127 460.3 535 53.3
ATR0626G211 Amborella trichopoda HOM05D004479 ORTHO05D005597 5.9e-127 458.8 531 51.8
Thhalv10004003m.g Eutrema salsugineum HOM05D004479 ORTHO05D005597 1.0e-126 458.0 525 61.5
Nitab4.5_0005664g0060 Nicotiana tabacum HOM05D004479 ORTHO05D005597 5.0e-126 455.7 523 53.7
CDE02G4004 Ceratophyllum demersum HOM05D004479 ORTHO05D005597 2.0e-122 443.7 538 54.3
HPP92_008247 Vanilla planifolia HOM05D004479 ORTHO05D005597 1.7e-121 440.7 550 51.3
SalBow6G0079 Salvia bowleyana HOM05D004479 ORTHO05D005597 2.8e-121 439.9 551 51.5
Gohir.D06G122500 Gossypium hirsutum HOM05D004479 ORTHO05D005597 7.0e-120 435.3 433 66.3
AL5G12650 Arabidopsis lyrata HOM05D004479 ORTHO05D005597 5.0e-118 429.1 530 59.6
BcaB07g30687 Brassica carinata HOM05D004479 ORTHO05D005597 3.0e-115 419.9 487 59.5
BraA09t38008Z Brassica rapa HOM05D004479 ORTHO05D005597 1.2e-114 417.9 537 56.2
AUR62025661 Chenopodium quinoa HOM05D004479 ORTHO05D005597 5.7e-114 415.6 479 54.1
BcaC04g21507 Brassica carinata HOM05D004479 ORTHO05D005597 7.5e-114 415.2 533 54.8
A09p24080 Brassica napus HOM05D004479 ORTHO05D005597 1.7e-113 414.1 529 56.0
C09p30960 Brassica napus HOM05D004479 ORTHO05D005597 6.3e-113 412.1 533 54.6
BolC9t55955H Brassica oleracea HOM05D004479 ORTHO05D005597 6.3e-113 412.1 533 54.6
Lj6C65T2 Lonicera japonica HOM05D004479 ORTHO05D005597 6.3e-113 412.1 324 71.9
SGA_v2.0_scaffold122G33268 Striga asiatica HOM05D004479 ORTHO05D005597 9.4e-109 398.3 424 60.6
PGSC0003DMG400009164 Solanum tuberosum HOM05D004479 ORTHO05D005597 1.2e-106 391.3 304 71.1
DCAR_030619 Daucus carota HOM05D004479 ORTHO05D005597 2.2e-105 387.1 312 69.6
PSO836G0001 Papaver somniferum HOM05D004479 ORTHO05D005597 4.6e-87 326.2 481 53.8
Haze_16264 Corylus avellana HOM05D004479 ORTHO05D005597 4.3e-85 319.7 210 81.0
Cpa.g.sc1515.2 Carica papaya HOM05D004479 ORTHO05D005597 1.8e-83 314.3 200 80.0
Dinv37782 Davidia involucrata HOM05D004479 ORTHO05D005597 6.0e-79 299.3 352 63.4
Dinv37783 Davidia involucrata HOM05D004479 ORTHO05D005597 1.0e-78 298.5 201 80.6
Os03g0423800 Oryza sativa ssp. japonica HOM05D004479 ORTHO05D005597 3.3e-77 293.5 233 65.2
Psat1g118080 Pisum sativum HOM05D004479 ORTHO05D005597 4.4e-74 283.1 173 85.5
BcaC06g31203 Brassica carinata HOM05D004479 ORTHO05D005597 3.8e-65 253.4 212 62.3
BraA06t27217Z Brassica rapa HOM05D004479 ORTHO05D005597 3.2e-64 250.4 231 59.3
BcaC06g34021 Brassica carinata HOM05D004479 ORTHO05D005597 1.6e-63 248.1 234 59.0
BolC7t43874H Brassica oleracea HOM05D004479 ORTHO05D005597 1.6e-63 248.1 231 59.7
Pp3c18_4030 Physcomitrium patens HOM05D004479 ORTHO05D005597 3.1e-59 233.8 314 47.5
A06p43310 Brassica napus HOM05D004479 ORTHO05D005597 7.6e-58 229.2 262 51.5
Psat0s1227g0080 Pisum sativum HOM05D000020 ORTHO05D015801 3.6e-52 210.3 135 83.0
Mapoly0029s0023 Marchantia polymorpha HOM05D004479 ORTHO05D005597 1.5e-50 204.9 314 42.4
Oeu062492.1 Olea europaea HOM05D004479 ORTHO05D005597 7.6e-50 202.6 222 52.7
Psat0s1762g0040 Pisum sativum HOM05D004479 ORTHO05D005597 3.2e-48 197.2 188 61.7
CiPaw.01G090700 Carya illinoinensis HOM05D004479 ORTHO05D005597 5.4e-48 196.4 211 62.1
C07p33640 Brassica napus HOM05D004479 ORTHO05D005597 4.3e-45 186.8 231 51.5
Aqoxy377s002 Aquilegia oxysepala HOM05D004479 ORTHO05D005597 3.7e-44 183.7 173 63.0
SMO114G0145 Selaginella moellendorffii HOM05D004479 ORTHO05D005597 1.7e-41 174.9 204 45.1
AagrBONN_evm.TU.Sc2ySwM_117.2251 Anthoceros agrestis HOM05D004479 ORTHO05D005597 4.9e-41 173.3 237 41.8
CBR_g41305 Chara braunii HOM05D004479 ORTHO05D005597 3.9e-38 163.7 274 40.1
AagrBONN_evm.TU.Sc2ySwM_117.1357 Anthoceros agrestis HOM05D004479 ORTHO05D005597 2.5e-37 161.0 242 40.5
CARHR145470 Cardamine hirsuta HOM05D004479 ORTHO05D005597 2.2e-33 147.9 106 71.7
COL.COLO4_31578 Corchorus olitorius HOM05D001810 ORTHO05D005662 4.2e-32 143.7 181 53.0
SEGI_11469 Sequoiadendron giganteum HOM05D004479 ORTHO05D005597 6.0e-31 139.8 156 50.0
Psat7g008520 Pisum sativum HOM05D004479 ORTHO05D005597 2.2e-28 131.3 79 86.1
Cpa.g.sc155.18 Carica papaya HOM05D004479 ORTHO05D005597 4.5e-26 123.6 103 68.9
Psat0s2660g0040 Pisum sativum HOM05D000020 ORTHO05D015801 7.7e-26 122.9 76 81.6
Actinidia21652 Actinidia chinensis HOM05D004479 ORTHO05D005597 3.6e-23 114.0 66 78.8
Psat3g045760 Pisum sativum HOM05D004392 ORTHO05D004846 6.7e-22 109.8 64 85.9
QL03p033126 Quercus lobata HOM05D004479 ORTHO05D005597 1.7e-20 105.1 69 75.4
DCAR_030620 Daucus carota HOM05D004479 ORTHO05D005597 2.4e-19 101.3 100 65.0
SEGI_18721 Sequoiadendron giganteum HOM05D004479 ORTHO05D005597 5.3e-19 100.1 91 57.1
SHI42840 Sapria himalayana HOM05D004479 ORTHO05D005597 1.0e-17 95.9 133 44.4
FAN12G4029 Fragaria x ananassa HOM05D002474 ORTHO05D007142 1.3e-17 95.5 118 55.9
SHI24407 Sapria himalayana HOM05D004479 ORTHO05D005597 6.5e-17 93.2 176 42.0
Psat0s1227g0040 Pisum sativum HOM05D000280 ORTHO05D015801 5.5e-16 90.1 52 84.6
SHI42601 Sapria himalayana HOM05D004479 ORTHO05D005597 7.2e-16 89.7 152 38.8
QL05p046913 Quercus lobata HOM05D004479 ORTHO05D005597 1.4e-14 85.5 114 51.8
Psat3g175600 Pisum sativum HOM05D004479 ORTHO05D005597 5.7e-13 80.1 72 66.7
SHI31116 Sapria himalayana HOM05D004479 ORTHO05D005597 2.8e-12 77.8 52 78.8
SHI42976 Sapria himalayana HOM05D004479 ORTHO05D005597 1.5e-10 72.0 115 39.1
Haze_16261 Corylus avellana HOM05D004479 ORTHO05D029161 2.0e-10 71.6 68 70.6
SHI31115 Sapria himalayana HOM05D004479 ORTHO05D005597 2.0e-10 71.6 44 75.0
Haze_18674 Corylus avellana HOM05D004479 ORTHO05D005597 3.5e-10 70.9 40 82.5
BcaC04g22058 Brassica carinata HOM05D006908 ORTHO05D008662 5.9e-10 70.1 39 82.1
C09p24010 Brassica napus HOM05D002960 ORTHO05D042139 5.9e-10 70.1 39 82.1
BolC9t55321H Brassica oleracea HOM05D002960 ORTHO05D042139 5.9e-10 70.1 39 82.1
COL.COLO4_18371 Corchorus olitorius HOM05D004479 ORTHO05D005597 5.9e-10 70.1 70 55.7
SHI50578 Sapria himalayana HOM05D004479 ORTHO05D005597 5.9e-10 70.1 251 30.3
SHI49595 Sapria himalayana HOM05D004479 ORTHO05D005597 3.8e-09 67.4 113 39.8
SHI34972 Sapria himalayana HOM05D004479 ORTHO05D005597 1.1e-08 65.9 107 40.2
COL.COLO4_27264 Corchorus olitorius HOM05D004479 ORTHO05D005597 7.2e-08 63.2 72 50.0
Peaxi162Scf00038g02640 Petunia axillaris HOM05D004479 ORTHO05D029161 2.1e-07 61.6 42 69.0
SHI36675 Sapria himalayana HOM05D004479 ORTHO05D005597 2.7e-07 61.2 54 59.3
BcaC02g11491 Brassica carinata HOM05D019637 ORTHO05D018695 6.1e-07 60.1 40 77.5
C04p14790 Brassica napus HOM05D004479 ORTHO05D018695 6.1e-07 60.1 40 77.5
BolC4t23053H Brassica oleracea HOM05D004479 ORTHO05D018695 6.1e-07 60.1 40 77.5
SHI13126 Sapria himalayana HOM05D000105 ORTHO05D000023 1.4e-06 58.9 51 66.7
Lj5C22T9 Lonicera japonica HOM05D004479 ORTHO05D029161 1.8e-06 58.5 69 66.7
Psat0s2154g0040 Pisum sativum HOM05D003471 ORTHO05D004079 1.8e-06 58.5 61 60.7
Nitab4.5_0005739g0060 Nicotiana tabacum HOM05D004479 ORTHO05D029161 3.9e-06 57.4 77 48.1


User provided reference genes

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