Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G5540 Trifolium pratense HOM05D005940 ORTHO05D007027 0.0e+00 1559.7 794 100.0
Medtr1g103870 Medicago truncatula HOM05D005940 ORTHO05D007027 2.3e-180 636.7 367 85.6
Medtr1g103900 Medicago truncatula HOM05D005940 ORTHO05D007027 7.8e-168 595.1 368 79.9
Medtr1g030720 Medicago truncatula HOM05D005940 ORTHO05D007027 2.6e-163 580.1 368 78.0
Psat6g207800 Pisum sativum HOM05D005940 ORTHO05D007027 3.5e-160 569.7 337 82.2
Ca_10908_v3 Cicer arietinum L. HOM05D005940 ORTHO05D007027 1.1e-158 564.7 335 82.7
Glyma.20G145700 Glycine max HOM05D005940 ORTHO05D007027 3.1e-156 556.6 364 75.0
Lj5g0027680 Lotus japonicus HOM05D005940 ORTHO05D007027 6.0e-152 542.3 361 71.5
Phvul.007G056900 Phaseolus vulgaris HOM05D005940 ORTHO05D007027 1.8e-140 504.2 364 68.4
arahy.Tifrunner.gnm1.ann1.N3JKH2 Arachis hypogaea HOM05D005940 ORTHO05D007027 5.8e-139 499.2 367 67.8
arahy.Tifrunner.gnm1.ann1.3UA0UH Arachis hypogaea HOM05D005940 ORTHO05D007027 1.9e-137 494.2 363 67.8
VMungo0720G1649 Vigna mungo HOM05D005940 ORTHO05D007027 2.4e-137 493.8 335 73.7
Lalb_Chr21g0304671 Lupinus albus HOM05D005940 ORTHO05D007027 4.6e-136 489.6 363 67.8
Cfa001588 Carpinus fangiana HOM05D005940 ORTHO05D007027 5.9e-123 446.0 363 58.4
CiPaw.02G177100 Carya illinoinensis HOM05D005940 ORTHO05D007027 8.8e-119 432.2 363 58.7
GSVIVG01016348001 Vitis vinifera HOM05D005940 ORTHO05D007027 7.4e-118 429.1 361 57.9
QL08p056963 Quercus lobata HOM05D005940 ORTHO05D007027 4.1e-116 423.3 364 59.3
CANSAT25G0128 Cannabis sativa HOM05D005940 ORTHO05D007027 4.5e-115 419.9 373 55.0
ClCG02G013840 Citrullus lanatus HOM05D005940 ORTHO05D007027 3.8e-114 416.8 361 55.4
Atru.chr12.628 Acer truncatum HOM05D005940 ORTHO05D007027 1.4e-113 414.8 351 57.3
TAR623G0325 Trochodendron aralioides HOM05D005940 ORTHO05D007027 3.2e-113 413.7 362 55.5
TWI38G0416 Tripterygium wilfordii HOM05D005940 ORTHO05D007027 5.5e-113 412.9 362 55.8
Sed0018989 Sechium edule HOM05D005940 ORTHO05D007027 1.2e-112 411.8 361 56.5
Prupe.2G219400 Prunus persica HOM05D005940 ORTHO05D007027 1.0e-111 408.7 368 57.1
Prupe.2G216400 Prunus persica HOM05D005940 ORTHO05D007027 5.1e-111 406.4 364 56.9
Gorai.012G093100 Gossypium raimondii HOM05D005940 ORTHO05D007027 8.8e-111 405.6 368 53.3
Ciclev10033357m.g Citrus clementina HOM05D005940 ORTHO05D007027 1.1e-110 405.2 359 55.4
FAN10G2498 Fragaria x ananassa HOM05D005940 ORTHO05D007027 2.0e-110 404.4 357 55.5
RcHm_v2.0_Chr1g0364231 Rosa chinensis HOM05D005940 ORTHO05D007027 3.3e-110 403.7 357 56.6
FAN06G4195 Fragaria x ananassa HOM05D005940 ORTHO05D007027 9.7e-110 402.1 357 55.7
Eucgr.G02795 Eucalyptus grandis HOM05D005940 ORTHO05D007027 1.3e-109 401.7 359 55.4
CsaV3_5G006320 Cucumis sativus L. HOM05D005940 ORTHO05D007027 1.7e-109 401.4 361 54.3
Hma1.2p1_0192F.1_g083550 Hydrangea macrophylla HOM05D005940 ORTHO05D007027 2.4e-108 397.5 375 53.6
Duzib114G0016 Durio zibethinus HOM05D005940 ORTHO05D007027 7.0e-108 396.0 365 53.4
Oeu055049.1 Olea europaea HOM05D005940 ORTHO05D007027 7.0e-108 396.0 423 48.2
Lj1A925T62 Lonicera japonica HOM05D005940 ORTHO05D007027 9.1e-108 395.6 337 57.6
Potri.010G216500 Populus trichocarpa HOM05D005940 ORTHO05D007027 1.5e-107 394.8 357 55.7
Nn2g10645 Nelumbo nucifera HOM05D005940 ORTHO05D007027 2.6e-107 394.0 347 55.3
FAN01G1689 Fragaria x ananassa HOM05D005940 ORTHO05D007027 2.9e-106 390.6 357 55.7
Aqoxy7G03246 Aquilegia oxysepala HOM05D005940 ORTHO05D007027 5.0e-106 389.8 365 53.7
Cc09_g02600 Coffea canephora HOM05D005940 ORTHO05D007027 8.5e-106 389.0 359 54.0
ECA232G2986 Erigeron canadensis HOM05D005940 ORTHO05D007027 1.6e-104 384.8 368 51.4
Gohir.D04G082400 Gossypium hirsutum HOM05D005940 ORTHO05D007027 1.6e-104 384.8 367 51.2
DCAR_019137 Daucus carota HOM05D005940 ORTHO05D007027 8.0e-104 382.5 347 54.5
PGR102G2278 Punica granatum HOM05D005940 ORTHO05D007027 8.0e-104 382.5 358 53.6
PSO170G0010 Papaver somniferum HOM05D005940 ORTHO05D007027 3.9e-103 380.2 360 53.9
FvH4_7g20280 Fragaria vesca HOM05D005940 ORTHO05D007027 5.2e-103 379.8 342 55.6
Solyc04g049890.4 Solanum lycopersicum HOM05D005940 ORTHO05D007027 5.2e-103 379.8 362 53.0
PSO357G0422 Papaver somniferum HOM05D005940 ORTHO05D007027 1.7e-101 374.8 360 53.1
PGSC0003DMG400010575 Solanum tuberosum HOM05D005940 ORTHO05D007027 6.3e-101 372.9 361 52.6
Nitab4.5_0000061g0280 Nicotiana tabacum HOM05D005940 ORTHO05D007027 1.1e-100 372.1 346 53.8
Migut.F01794 Erythranthe guttata HOM05D005940 ORTHO05D007027 1.8e-100 371.3 367 49.9
Sopen04g020430 Solanum pennellii HOM05D005940 ORTHO05D007027 1.8e-100 371.3 369 51.8
Peaxi162Scf00208g00211 Petunia axillaris HOM05D005940 ORTHO05D007027 5.3e-100 369.8 359 51.5
Lsat_1_v5_gn_1_128021 Lactuca sativa HOM05D005940 ORTHO05D007027 2.0e-99 367.9 362 51.7
HanXRQChr16g0510921 Helianthus annuus HOM05D005940 ORTHO05D007027 4.5e-99 366.7 360 50.6
MD01G1112500 Malus domestica HOM05D005940 ORTHO05D007027 1.1e-97 362.1 359 52.4
Dinv31364 Davidia involucrata HOM05D005940 ORTHO05D007027 3.7e-93 347.1 303 56.4
THA.LOC104809986 Tarenaya hassleriana HOM05D005940 ORTHO05D007027 7.0e-92 342.8 367 49.9
FAN03G1319 Fragaria x ananassa HOM05D005940 ORTHO05D007027 1.2e-91 342.0 312 55.4
Thecc.10G067000 Theobroma cacao HOM05D005940 ORTHO05D007027 1.1e-89 335.5 301 55.5
CARHR164970 Cardamine hirsuta HOM05D005940 ORTHO05D007027 4.7e-88 330.1 365 49.0
Sp5g07450 Schrenkiella parvula HOM05D005940 ORTHO05D007027 6.8e-87 326.2 371 48.5
Thhalv10010491m.g Eutrema salsugineum HOM05D005940 ORTHO05D007027 8.8e-87 325.9 371 48.2
AUR62027909 Chenopodium quinoa HOM05D005940 ORTHO05D007027 1.2e-86 325.5 363 47.9
AL5G36080 Arabidopsis lyrata HOM05D005940 ORTHO05D007027 3.4e-86 323.9 368 48.9
EL10Ac2g03550 Beta vulgaris HOM05D005940 ORTHO05D007027 2.2e-85 321.2 338 50.3
AUR62020800 Chenopodium quinoa HOM05D005940 ORTHO05D007027 2.2e-85 321.2 316 52.2
Aa31sc33G20 Aethionema arabicum HOM05D005940 ORTHO05D007027 8.3e-85 319.3 382 47.6
Carub.0005s2159 Capsella rubella HOM05D005940 ORTHO05D007027 8.3e-85 319.3 368 48.9
BolC8t50626H Brassica oleracea HOM05D005940 ORTHO05D007027 1.8e-84 318.2 369 48.2
BcaNung04648 Brassica carinata HOM05D005940 ORTHO05D007027 4.5e-83 313.5 368 47.8
MELO3C011725.2 Cucumis melo HOM05D005940 ORTHO05D007027 1.3e-82 312.0 302 54.6
HPP92_019787 Vanilla planifolia HOM05D005940 ORTHO05D007027 1.3e-82 312.0 367 47.7
BcaB01g00141 Brassica carinata HOM05D005940 ORTHO05D007027 1.7e-82 311.6 368 47.0
Hma1.2p1_0192F.1_g083560 Hydrangea macrophylla HOM05D005940 ORTHO05D007027 4.2e-81 307.0 271 56.1
SGA_v2.0_scaffold122G33246 Striga asiatica HOM05D005940 ORTHO05D007027 1.6e-80 305.1 348 46.6
Manes.10G041400 Manihot esculenta HOM05D005940 ORTHO05D007027 3.6e-80 303.9 288 55.2
CDE11G0619 Ceratophyllum demersum HOM05D005940 ORTHO05D007027 1.0e-79 302.4 335 46.0
BraA09t40251Z Brassica rapa HOM05D005940 ORTHO05D007027 1.4e-79 302.0 369 46.9
SalBow3G3596 Salvia bowleyana HOM05D005940 ORTHO05D007027 1.4e-79 302.0 349 42.7
COL.COLO4_23758 Corchorus olitorius HOM05D005940 ORTHO05D007027 4.0e-79 300.4 252 57.5
C08p30200 Brassica napus HOM05D005940 ORTHO05D007027 1.2e-78 298.9 351 48.7
Gohir.A05G343900 Gossypium hirsutum HOM05D005940 ORTHO05D007027 2.6e-78 297.7 278 54.3
Nitab4.5_0003582g0030 Nicotiana tabacum HOM05D005940 ORTHO05D007027 3.4e-78 297.4 259 56.4
A09p47960 Brassica napus HOM05D005940 ORTHO05D007027 4.4e-78 297.0 351 48.7
Cpa.g.sc1.266 Carica papaya HOM05D005940 ORTHO05D007027 2.8e-77 294.3 273 54.6
CAN.G693.9 Capsicum annuum HOM05D005940 ORTHO05D007027 6.3e-77 293.1 286 53.1
Sabra10G0167600 Salix brachista HOM05D005940 ORTHO05D007027 1.3e-74 285.4 276 54.3
Haze_16942 Corylus avellana HOM05D005940 ORTHO05D007027 5.6e-73 280.0 230 60.4
Rhsim09G0154600 Rhododendron simsii HOM05D005940 ORTHO05D007027 3.0e-71 274.2 273 53.5
Zm00001eb194920 Zea mays HOM05D005940 ORTHO05D007027 6.4e-69 266.5 353 43.6
ATR0594G026 Amborella trichopoda HOM05D005940 ORTHO05D007027 4.6e-67 260.4 296 50.7
Medtr1g030710 Medicago truncatula HOM05D005940 ORTHO05D007027 1.4e-63 248.8 219 63.5
AT3G54970 Arabidopsis thaliana HOM05D005940 ORTHO05D007027 3.9e-58 230.7 278 48.2
Hund22470 Selenicereus undatus HOM05D005940 ORTHO05D007027 1.9e-52 211.8 331 38.1
Sc06g0001810 Simmondsia chinensis HOM05D005940 ORTHO05D007027 1.6e-51 208.8 172 58.7
PGR142G2620 Punica granatum HOM05D005940 ORTHO05D007027 6.0e-51 206.8 278 43.5
AagrBONN_evm.TU.Sc2ySwM_344.1014 Anthoceros agrestis HOM05D005940 ORTHO05D007027 6.6e-50 203.4 371 37.7
CSS0031020 Camellia sinensis var. sinensis HOM05D005940 ORTHO05D007027 1.2e-48 199.1 191 54.5
Mapoly0016s0023 Marchantia polymorpha HOM05D005940 ORTHO05D007027 8.1e-48 196.4 376 37.2
BcaNung04643 Brassica carinata HOM05D005940 ORTHO05D007027 6.8e-47 193.4 281 41.3
Pp3c1_190 Physcomitrium patens HOM05D005940 ORTHO05D007027 9.9e-46 189.5 373 35.9
SMO329G0058 Selaginella moellendorffii HOM05D005940 ORTHO05D007027 1.2e-43 182.6 347 35.4
SMO201G0153 Selaginella moellendorffii HOM05D005940 ORTHO05D007027 1.7e-42 178.7 344 34.9
SHI28162 Sapria himalayana HOM05D005940 ORTHO05D007027 9.9e-38 162.9 163 52.1
SEGI_22112 Sequoiadendron giganteum HOM05D005940 ORTHO05D007027 1.2e-35 156.0 231 42.4
Os02g0252600 Oryza sativa ssp. japonica HOM05D005940 ORTHO05D007027 1.1e-31 142.9 223 39.9
MBI14_g28170_MAGBIO Magnolia biondii HOM05D005940 ORTHO05D007027 1.9e-25 122.1 92 57.6
TPR.G40057 Trifolium pratense HOM05D005940 ORTHO05D007027 7.4e-25 120.2 71 81.7
CBR_g3301 Chara braunii HOM05D003248 ORTHO05D000301 2.8e-24 118.2 398 26.9
Sopen09g009530 Solanum pennellii HOM05D005940 ORTHO05D007027 2.2e-21 108.6 82 54.9
Haze_16941 Corylus avellana HOM05D005940 ORTHO05D007027 3.2e-20 104.8 130 42.3
unitig_46.g18613 Utricularia gibba HOM05D005940 ORTHO05D007027 3.2e-20 104.8 121 44.6
SEGI_30186 Sequoiadendron giganteum HOM05D005940 ORTHO05D007027 5.5e-20 104.0 90 52.2
FAN06G2675 Fragaria x ananassa HOM05D005940 ORTHO05D007027 7.1e-20 103.6 234 36.8
ECA240G2370 Erigeron canadensis HOM05D005940 ORTHO05D007027 1.3e-18 99.4 71 54.9
PRCOL_00002492 Prasinoderma coloniale HOM05D005940 ORTHO05D007027 2.4e-15 88.6 283 30.4
SHI28160 Sapria himalayana HOM05D000105 ORTHO05D000023 2.0e-14 85.5 68 64.7
Cre01.g033516 Chlamydomonas reinhardtii HOM05D005940 ORTHO05D007027 9.3e-12 76.6 181 29.8
MCO14G149 Micromonas commoda HOM05D005940 ORTHO05D007027 6.0e-11 73.9 286 26.2
HPP92_019693 Vanilla planifolia HOM05D005940 ORTHO05D002769 2.3e-10 72.0 64 56.2
CSS0028355 Camellia sinensis var. sinensis HOM05D005940 ORTHO05D007027 3.0e-10 71.6 38 84.2
CSS0026064 Camellia sinensis var. sinensis HOM05D005940 ORTHO05D007027 1.1e-09 69.7 47 59.6
SMO112G0074 Selaginella moellendorffii HOM05D005940 ORTHO05D007027 3.7e-08 64.7 186 30.1
PRCOL_00002155 Prasinoderma coloniale HOM05D005940 ORTHO05D007027 3.1e-07 61.6 309 25.9
Cre01.g033763 Chlamydomonas reinhardtii HOM05D005940 ORTHO05D007027 3.4e-06 58.2 58 53.4


User provided reference genes

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