Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G5521 Trifolium pratense HOM05D003286 ORTHO05D002463 4.4e-121 438.0 221 100.0
Medtr1g105515 Medicago truncatula HOM05D003286 ORTHO05D002463 4.4e-44 182.2 265 43.8
Psat6g210240 Pisum sativum HOM05D003286 ORTHO05D002463 4.9e-35 152.1 247 40.5
Ca_10980_v3 Cicer arietinum L. HOM05D003286 ORTHO05D002463 5.8e-28 128.6 248 36.7
Ca_11000_v3 Cicer arietinum L. HOM05D003286 ORTHO05D002463 5.8e-28 128.6 248 36.7
THA.LOC104806256 Tarenaya hassleriana HOM05D003286 ORTHO05D002463 4.3e-23 112.5 202 36.1
PGR042G2119 Punica granatum HOM05D003286 ORTHO05D002463 6.2e-22 108.6 199 35.7
BcaB01g01895 Brassica carinata HOM05D003286 ORTHO05D002463 8.1e-22 108.2 206 36.9
BcaC04g21387 Brassica carinata HOM05D003286 ORTHO05D002463 8.1e-22 108.2 206 35.9
C09p32410 Brassica napus HOM05D003286 ORTHO05D002463 8.1e-22 108.2 206 35.9
BolC9t56086H Brassica oleracea HOM05D003286 ORTHO05D002463 8.1e-22 108.2 206 35.9
Thhalv10028963m.g Eutrema salsugineum HOM05D003286 ORTHO05D002463 8.1e-22 108.2 208 35.6
A09p25500 Brassica napus HOM05D003286 ORTHO05D002463 1.1e-21 107.8 207 35.7
BraA09t38125Z Brassica rapa HOM05D003286 ORTHO05D002463 1.1e-21 107.8 207 35.7
BraA08t33672Z Brassica rapa HOM05D003286 ORTHO05D002463 1.4e-21 107.5 204 35.8
MELO3C007371.2 Cucumis melo HOM05D003286 ORTHO05D002463 1.8e-21 107.1 200 37.5
A08p17100 Brassica napus HOM05D003286 ORTHO05D002463 2.3e-21 106.7 206 35.4
CsaV3_6G049250 Cucumis sativus L. HOM05D003286 ORTHO05D002463 6.8e-21 105.1 198 36.4
GSVIVG01012631001 Vitis vinifera HOM05D003286 ORTHO05D002463 8.9e-21 104.8 203 35.5
Sp6g02990 Schrenkiella parvula HOM05D003286 ORTHO05D002463 1.2e-20 104.4 210 35.7
Duzib160G0656 Durio zibethinus HOM05D003286 ORTHO05D002463 1.5e-20 104.0 209 34.0
BcaC01g00928 Brassica carinata HOM05D003286 ORTHO05D002463 4.4e-20 102.4 206 34.5
C03p86020 Brassica napus HOM05D003286 ORTHO05D002463 4.4e-20 102.4 206 34.5
BolC3t20894H Brassica oleracea HOM05D003286 ORTHO05D002463 4.4e-20 102.4 206 34.5
Aa31sc199G10 Aethionema arabicum HOM05D003286 ORTHO05D002463 5.8e-20 102.1 209 34.4
TPR.G34503 Trifolium pratense HOM05D003286 ORTHO05D002463 7.5e-20 101.7 264 31.4
Psat6g165560 Pisum sativum HOM05D003286 ORTHO05D002463 1.3e-19 100.9 268 31.3
AL6G48830 Arabidopsis lyrata HOM05D003286 ORTHO05D002463 3.7e-19 99.4 204 35.8
Carub.0006s3413 Capsella rubella HOM05D003286 ORTHO05D002463 3.7e-19 99.4 213 33.8
Manes.16G012200 Manihot esculenta HOM05D003286 ORTHO05D002463 3.7e-19 99.4 260 33.8
VMungo0251G0596 Vigna mungo HOM05D003286 ORTHO05D002463 4.9e-19 99.0 259 30.9
ClCG01G022170 Citrullus lanatus HOM05D003286 ORTHO05D002463 6.4e-19 98.6 205 33.7
Lj2g0008596 Lotus japonicus HOM05D003286 ORTHO05D002463 1.1e-18 97.8 208 34.1
Carub.0006s3317 Capsella rubella HOM05D003286 ORTHO05D002463 2.4e-18 96.7 208 36.1
Gorai.011G016700 Gossypium raimondii HOM05D003286 ORTHO05D002463 2.4e-18 96.7 268 29.9
Psat5g122680 Pisum sativum HOM05D003286 ORTHO05D002463 3.2e-18 96.3 266 32.0
CARHR251320 Cardamine hirsuta HOM05D003286 ORTHO05D002463 4.1e-18 95.9 207 34.3
Phvul.002G250900 Phaseolus vulgaris HOM05D003286 ORTHO05D002463 7.1e-18 95.1 261 32.2
Gohir.D10G015100 Gossypium hirsutum HOM05D003286 ORTHO05D002463 9.2e-18 94.7 268 30.2
Ciclev10018056m.g Citrus clementina HOM05D003286 ORTHO05D002463 1.6e-17 94.0 269 31.6
Glyma.13G153900 Glycine max HOM05D003286 ORTHO05D002463 1.6e-17 94.0 261 31.4
Glyma.U031417 Glycine max HOM05D003286 ORTHO05D002463 1.6e-17 94.0 269 30.1
Thecc.06G214200 Theobroma cacao HOM05D003286 ORTHO05D002463 1.6e-17 94.0 265 29.4
MBI02_g21870_MAGBIO Magnolia biondii HOM05D003286 ORTHO05D002463 3.5e-17 92.8 263 30.0
RcHm_v2.0_Chr5g0003951 Rosa chinensis HOM05D003286 ORTHO05D002463 4.6e-17 92.4 267 26.6
Gohir.A10G015100 Gossypium hirsutum HOM05D003286 ORTHO05D002463 6.0e-17 92.0 268 29.9
BolC9t53168H Brassica oleracea HOM05D003286 ORTHO05D002463 7.8e-17 91.7 200 32.5
C02p39730 Brassica napus HOM05D003286 ORTHO05D002463 1.3e-16 90.9 208 33.2
C09p02370 Brassica napus HOM05D003286 ORTHO05D002463 1.7e-16 90.5 201 33.8
QL93p0073_0716 Quercus lobata HOM05D003286 ORTHO05D002463 1.7e-16 90.5 279 27.2
GSVIVG01029957001 Vitis vinifera HOM05D003286 ORTHO05D002463 1.7e-16 90.5 208 33.7
Medtr3g080180 Medicago truncatula HOM05D003286 ORTHO05D002463 2.3e-16 90.1 264 29.2
TWI38G0444 Tripterygium wilfordii HOM05D003286 ORTHO05D002463 2.3e-16 90.1 228 31.6
AT4G05230 Arabidopsis thaliana HOM05D003286 ORTHO05D002463 3.0e-16 89.7 205 32.7
Potri.004G022400 Populus trichocarpa HOM05D003286 ORTHO05D002463 3.0e-16 89.7 266 27.8
CARHR252330 Cardamine hirsuta HOM05D003286 ORTHO05D002463 6.6e-16 88.6 206 31.6
Ca_10981_v3 Cicer arietinum L. HOM05D003286 ORTHO05D002463 1.1e-15 87.8 183 36.1
Ca_11001_v3 Cicer arietinum L. HOM05D003286 ORTHO05D002463 1.1e-15 87.8 183 36.1
SHI02168 Sapria himalayana HOM05D003286 ORTHO05D002463 1.1e-15 87.8 248 30.2
Zm00001eb101690 Zea mays HOM05D003286 ORTHO05D002463 1.1e-15 87.8 200 32.0
Lalb_Chr10g0101691 Lupinus albus HOM05D003286 ORTHO05D002463 1.5e-15 87.4 290 30.0
A09p02270 Brassica napus HOM05D003286 ORTHO05D002463 1.9e-15 87.0 211 31.8
BraA09t35876Z Brassica rapa HOM05D003286 ORTHO05D002463 1.9e-15 87.0 211 31.8
Manes.17G035100 Manihot esculenta HOM05D003286 ORTHO05D002463 1.9e-15 87.0 269 28.6
Gohir.A10G211300 Gossypium hirsutum HOM05D003286 ORTHO05D002463 2.5e-15 86.7 265 28.7
QL05p075142 Quercus lobata HOM05D003286 ORTHO05D002463 2.5e-15 86.7 281 27.0
TAR624G0182 Trochodendron aralioides HOM05D003286 ORTHO05D002463 2.5e-15 86.7 204 36.8
Psat6g222040 Pisum sativum HOM05D000629 ORTHO05D000576 3.3e-15 86.3 87 50.6
Sed0004843 Sechium edule HOM05D003286 ORTHO05D002463 3.3e-15 86.3 266 28.9
Cfa000276 Carpinus fangiana HOM05D003286 ORTHO05D002463 4.3e-15 85.9 251 29.5
FAN24G2961 Fragaria x ananassa HOM05D003286 ORTHO05D002463 4.3e-15 85.9 271 27.7
Eucgr.E03707 Eucalyptus grandis HOM05D003286 ORTHO05D002463 5.6e-15 85.5 266 25.6
Manes.17G035200 Manihot esculenta HOM05D003286 ORTHO05D002463 5.6e-15 85.5 269 29.0
Ca_10982_v3 Cicer arietinum L. HOM05D003286 ORTHO05D002463 7.3e-15 85.1 261 29.5
Ca_11002_v3 Cicer arietinum L. HOM05D003286 ORTHO05D002463 7.3e-15 85.1 261 29.5
CiPaw.09G087100 Carya illinoinensis HOM05D003286 ORTHO05D002463 1.2e-14 84.3 270 26.7
TAR624G0130 Trochodendron aralioides HOM05D003286 ORTHO05D002463 1.2e-14 84.3 203 33.5
TAR624G1349 Trochodendron aralioides HOM05D003286 ORTHO05D002463 1.2e-14 84.3 203 33.5
unitig_32.g10728 Utricularia gibba HOM05D003286 ORTHO05D002463 1.2e-14 84.3 253 28.5
FvH4_2g19820 Fragaria vesca HOM05D003286 ORTHO05D002463 2.1e-14 83.6 271 27.3
TAR624G0858 Trochodendron aralioides HOM05D003286 ORTHO05D002463 2.1e-14 83.6 204 34.3
Hma1.2p1_0158F.1_g069790 Hydrangea macrophylla HOM05D003286 ORTHO05D002463 4.7e-14 82.4 271 28.4
Actinidia01598 Actinidia chinensis HOM05D003286 ORTHO05D002463 8.1e-14 81.6 263 28.1
Cpa.g.sc198.10 Carica papaya HOM05D003286 ORTHO05D002463 1.1e-13 81.3 260 26.9
unitig_748.g8449 Utricularia gibba HOM05D003286 ORTHO05D002463 1.1e-13 81.3 241 26.6
FAN15G1751 Fragaria x ananassa HOM05D003286 ORTHO05D002463 1.4e-13 80.9 269 26.8
Psat6g209040 Pisum sativum HOM05D000629 ORTHO05D000576 1.4e-13 80.9 91 47.3
Sabra04G0012200 Salix brachista HOM05D003286 ORTHO05D002463 1.4e-13 80.9 263 28.5
MD10G1314800 Malus domestica HOM05D003286 ORTHO05D002463 3.1e-13 79.7 285 26.3
Prupe.4G026000 Prunus persica HOM05D003286 ORTHO05D002463 4.0e-13 79.3 282 26.6
Duzib235G0679 Durio zibethinus HOM05D003286 ORTHO05D002463 5.2e-13 79.0 267 26.2
ECA238G0902 Erigeron canadensis HOM05D003286 ORTHO05D002463 6.8e-13 78.6 251 29.5
Nn1g03635 Nelumbo nucifera HOM05D003286 ORTHO05D002463 6.8e-13 78.6 290 26.9
Eucgr.D00812 Eucalyptus grandis HOM05D003286 ORTHO05D002463 2.0e-12 77.0 242 27.7
VMungo0720G2163 Vigna mungo HOM05D003286 ORTHO05D002463 2.6e-12 76.6 147 32.7
HanXRQChr08g0234141 Helianthus annuus HOM05D003286 ORTHO05D002463 3.4e-12 76.3 267 25.8
PGR004G2484 Punica granatum HOM05D003286 ORTHO05D002463 5.8e-12 75.5 256 28.1
EL10Ac4g07788 Beta vulgaris HOM05D003286 ORTHO05D002463 7.6e-12 75.1 303 23.4
Peaxi162Scf00063g00244 Petunia axillaris HOM05D003286 ORTHO05D002463 7.6e-12 75.1 271 26.6
Lj1g0012071 Lotus japonicus HOM05D003286 ORTHO05D002463 9.9e-12 74.7 274 26.6
Medtr8g019530 Medicago truncatula HOM05D003286 ORTHO05D002463 9.9e-12 74.7 97 43.3
CANSAT56G4121 Cannabis sativa HOM05D003286 ORTHO05D002463 1.7e-11 73.9 290 28.3
Aqoxy1G02958 Aquilegia oxysepala HOM05D003286 ORTHO05D002463 2.2e-11 73.6 276 26.8
Cc07_g12950 Coffea canephora HOM05D003286 ORTHO05D002463 2.9e-11 73.2 284 24.6
Oeu009440.1 Olea europaea HOM05D003286 ORTHO05D002463 2.9e-11 73.2 253 25.7
Rhsim10G0183400 Rhododendron simsii HOM05D003286 ORTHO05D002463 4.9e-11 72.4 260 28.5
Eucgr.F00162 Eucalyptus grandis HOM05D003286 ORTHO05D002463 8.4e-11 71.6 266 23.3
Lj1P1225T26 Lonicera japonica HOM05D003286 ORTHO05D002463 8.4e-11 71.6 279 25.1
Lsat_1_v5_gn_8_111880 Lactuca sativa HOM05D003286 ORTHO05D002463 1.1e-10 71.2 189 29.6
Phvul.007G052250 Phaseolus vulgaris HOM05D003286 ORTHO05D002463 1.1e-10 71.2 85 41.2
Os09g0481650 Oryza sativa ssp. japonica HOM05D003286 ORTHO05D002463 1.4e-10 70.9 204 30.9
AL6G49960 Arabidopsis lyrata HOM05D003286 ORTHO05D002463 1.9e-10 70.5 223 30.0
AT4G05260 Arabidopsis thaliana HOM05D003286 ORTHO05D002463 2.4e-10 70.1 252 27.0
Thhalv10029386m.g Eutrema salsugineum HOM05D003286 ORTHO05D002463 4.1e-10 69.3 181 33.7
DCAR_030615 Daucus carota HOM05D003286 ORTHO05D002463 5.4e-10 68.9 274 27.4
AL6G49970 Arabidopsis lyrata HOM05D003286 ORTHO05D002463 7.1e-10 68.6 282 25.5
Thecc.10G122300 Theobroma cacao HOM05D003286 ORTHO05D002463 7.1e-10 68.6 184 28.3
CDE04G0028 Ceratophyllum demersum HOM05D003286 ORTHO05D002463 1.2e-09 67.8 78 42.3
Nn1g08164 Nelumbo nucifera HOM05D003286 ORTHO05D002463 1.2e-09 67.8 317 25.2
CAN.G222.170 Capsicum annuum HOM05D003286 ORTHO05D002463 1.6e-09 67.4 284 25.0
Migut.K01114 Erythranthe guttata HOM05D003286 ORTHO05D002463 1.6e-09 67.4 273 26.4
VMungo0720G2787 Vigna mungo HOM05D003286 ORTHO05D002463 2.1e-09 67.0 297 25.3
PSO541G2565 Papaver somniferum HOM05D003286 ORTHO05D002463 6.0e-09 65.5 300 27.7
Sc07g0002810 Simmondsia chinensis HOM05D003286 ORTHO05D002463 7.8e-09 65.1 80 37.5
CARHR252240 Cardamine hirsuta HOM05D003286 ORTHO05D002463 1.0e-08 64.7 94 41.5
Solyc11g011900.1 Solanum lycopersicum HOM05D003286 ORTHO05D002463 1.0e-08 64.7 287 24.4
Dinv20018 Davidia involucrata HOM05D000218 ORTHO05D000125 1.3e-08 64.3 71 43.7
MD05G1341200 Malus domestica HOM05D003286 ORTHO05D002463 1.3e-08 64.3 122 31.1
Phvul.007G052300 Phaseolus vulgaris HOM05D003286 ORTHO05D050290 1.7e-08 63.9 198 29.8
AT4G03370 Arabidopsis thaliana HOM05D003286 ORTHO05D002463 3.9e-08 62.8 283 24.0
COL.COLO4_31727 Corchorus olitorius HOM05D003286 ORTHO05D002463 3.9e-08 62.8 173 27.2
Phvul.007G052200 Phaseolus vulgaris HOM05D003286 ORTHO05D050268 5.1e-08 62.4 77 33.8
CARHR252310 Cardamine hirsuta HOM05D003286 ORTHO05D002463 1.1e-07 61.2 231 26.8
AUR62020422 Chenopodium quinoa HOM05D003286 ORTHO05D002463 1.1e-07 61.2 183 26.2
FvH4_3g02641 Fragaria vesca HOM05D000218 ORTHO05D000125 1.5e-07 60.8 249 25.7
Nitab4.5_0002214g0070 Nicotiana tabacum HOM05D003286 ORTHO05D002463 2.5e-07 60.1 76 36.8
CDE04G2878 Ceratophyllum demersum HOM05D003286 ORTHO05D002463 3.3e-07 59.7 189 27.0
AL6G48840 Arabidopsis lyrata HOM05D003286 ORTHO05D002463 4.3e-07 59.3 108 31.5
AT2G32350 Arabidopsis thaliana HOM05D007466 ORTHO05D002463 7.3e-07 58.5 184 27.7
CARHR252280 Cardamine hirsuta HOM05D003286 ORTHO05D002463 9.6e-07 58.2 248 26.2
Sc07g0002820 Simmondsia chinensis HOM05D003286 ORTHO05D002463 9.6e-07 58.2 58 43.1
Phvul.007G052400 Phaseolus vulgaris HOM05D003286 ORTHO05D002463 1.2e-06 57.8 294 24.5
TAR624G0468 Trochodendron aralioides HOM05D003286 ORTHO05D002463 1.2e-06 57.8 53 52.8
HPP92_012386 Vanilla planifolia HOM05D003286 ORTHO05D002463 1.2e-06 57.8 259 23.2
Carub.0006s3408 Capsella rubella HOM05D003286 ORTHO05D002463 2.1e-06 57.0 90 37.8
Thhalv10029479m.g Eutrema salsugineum HOM05D003286 ORTHO05D002463 2.1e-06 57.0 54 53.7
BcaC02g11328 Brassica carinata HOM05D007466 ORTHO05D002463 2.8e-06 56.6 184 27.2
C04p17280 Brassica napus HOM05D007466 ORTHO05D002463 2.8e-06 56.6 184 27.2
BolC4t23280H Brassica oleracea HOM05D007466 ORTHO05D002463 2.8e-06 56.6 184 27.2
FAN27G1731 Fragaria x ananassa HOM05D003286 ORTHO05D002463 2.8e-06 56.6 260 23.8
AL125U10032 Arabidopsis lyrata HOM05D007466 ORTHO05D002463 3.6e-06 56.2 184 27.2
A05p13150 Brassica napus HOM05D007466 ORTHO05D002463 3.6e-06 56.2 184 27.7
BraA05t20253Z Brassica rapa HOM05D007466 ORTHO05D002463 4.7e-06 55.8 184 27.2
AUR62015794 Chenopodium quinoa HOM05D003286 ORTHO05D002463 4.7e-06 55.8 147 29.3
AT4G05250 Arabidopsis thaliana HOM05D003286 ORTHO05D002463 6.2e-06 55.5 95 35.8
Carub.0004s1370 Capsella rubella HOM05D007466 ORTHO05D002463 8.1e-06 55.1 182 27.5
CARHR126170 Cardamine hirsuta HOM05D007466 ORTHO05D002463 8.1e-06 55.1 183 25.1
Thhalv10029305m.g Eutrema salsugineum HOM05D003286 ORTHO05D021628 8.1e-06 55.1 98 34.7
Hund01018 Selenicereus undatus HOM05D003286 ORTHO05D002463 8.1e-06 55.1 242 25.6


User provided reference genes

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