Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G5479 Trifolium pratense HOM05D005574 ORTHO05D007102 1.4e-204 716.1 358 100.0
Psat6g206920 Pisum sativum HOM05D005574 ORTHO05D007102 4.2e-153 545.0 361 75.9
Medtr1g103560 Medicago truncatula HOM05D005574 ORTHO05D007102 1.8e-151 539.7 368 75.3
Ca_10888_v3 Cicer arietinum L. HOM05D005574 ORTHO05D007102 2.6e-139 499.2 335 75.8
Glyma.20G147200 Glycine max HOM05D005574 ORTHO05D007102 1.0e-111 407.5 363 60.9
Glyma.10G247300 Glycine max HOM05D005574 ORTHO05D007102 4.0e-111 405.6 363 60.6
arahy.Tifrunner.gnm1.ann1.R5YE9W Arachis hypogaea HOM05D005574 ORTHO05D007102 4.5e-107 392.1 343 60.6
arahy.Tifrunner.gnm1.ann1.PUQJ4X Arachis hypogaea HOM05D005574 ORTHO05D007102 2.2e-106 389.8 346 59.5
Phvul.007G058100 Phaseolus vulgaris HOM05D005574 ORTHO05D007102 5.0e-106 388.7 357 60.2
VMungo0720G0566 Vigna mungo HOM05D005574 ORTHO05D007102 4.4e-102 375.6 357 58.3
Lj5g0023935 Lotus japonicus HOM05D005574 ORTHO05D007102 7.5e-102 374.8 350 58.9
QL06p002087 Quercus lobata HOM05D005574 ORTHO05D007102 3.6e-96 355.9 346 55.8
Lalb_Chr02g0140631 Lupinus albus HOM05D005574 ORTHO05D007102 1.4e-95 354.0 362 54.1
Prupe.1G015700 Prunus persica HOM05D005574 ORTHO05D007102 5.9e-91 338.6 346 53.2
Cfa015664 Carpinus fangiana HOM05D005574 ORTHO05D007102 1.7e-90 337.0 347 52.4
Haze_00883 Corylus avellana HOM05D005574 ORTHO05D007102 1.7e-90 337.0 351 52.1
RcHm_v2.0_Chr4g0415861 Rosa chinensis HOM05D005574 ORTHO05D007102 1.1e-89 334.3 351 51.9
CiPaw.02G098000 Carya illinoinensis HOM05D005574 ORTHO05D007102 9.5e-89 331.3 358 52.0
FAN07G2976 Fragaria x ananassa HOM05D005574 ORTHO05D007102 1.4e-87 327.4 359 51.3
Atru.chr4.2447 Acer truncatum HOM05D005574 ORTHO05D007102 3.0e-87 326.2 355 51.0
FAN02G2947 Fragaria x ananassa HOM05D005574 ORTHO05D007102 8.9e-87 324.7 348 51.4
Ciclev10005241m.g Citrus clementina HOM05D005574 ORTHO05D007102 3.4e-86 322.8 346 51.7
MD16G1195700 Malus domestica HOM05D005574 ORTHO05D007102 3.4e-86 322.8 347 51.0
Dinv44545 Davidia involucrata HOM05D005574 ORTHO05D007102 4.4e-86 322.4 353 50.1
Thecc.04G192400 Theobroma cacao HOM05D005574 ORTHO05D007102 9.8e-86 321.2 342 50.9
FvH4_4g16270 Fragaria vesca HOM05D005574 ORTHO05D007102 2.2e-85 320.1 364 49.5
FAN12G0525 Fragaria x ananassa HOM05D005574 ORTHO05D007102 2.2e-85 320.1 364 49.5
FAN12G2145 Fragaria x ananassa HOM05D005574 ORTHO05D007102 2.2e-85 320.1 364 49.5
FAN12G2997 Fragaria x ananassa HOM05D005574 ORTHO05D007102 2.2e-85 320.1 364 49.5
MD13G1194900 Malus domestica HOM05D005574 ORTHO05D007102 2.9e-85 319.7 347 51.6
TAR362G0087 Trochodendron aralioides HOM05D005574 ORTHO05D007102 2.9e-85 319.7 337 50.1
Potri.010G086100 Populus trichocarpa HOM05D005574 ORTHO05D007102 1.8e-84 317.0 361 50.4
Duzib268G0255 Durio zibethinus HOM05D005574 ORTHO05D007102 4.1e-84 315.8 347 50.7
CANSAT78G2217 Cannabis sativa HOM05D005574 ORTHO05D007102 2.7e-83 313.2 353 48.4
GSVIVG01017997001 Vitis vinifera HOM05D005574 ORTHO05D007102 7.8e-83 311.6 325 51.1
Peaxi162Scf00092g00614 Petunia axillaris HOM05D005574 ORTHO05D007102 2.5e-81 306.6 339 48.4
COL.COLO4_05700 Corchorus olitorius HOM05D005574 ORTHO05D007102 5.6e-81 305.4 336 48.5
Sabra10G0057600 Salix brachista HOM05D005574 ORTHO05D007102 5.6e-81 305.4 359 48.7
CSS0019466 Camellia sinensis var. sinensis HOM05D005574 ORTHO05D007102 3.6e-80 302.8 348 46.8
TWI53G0495 Tripterygium wilfordii HOM05D005574 ORTHO05D007102 2.0e-78 297.0 331 48.9
Gorai.011G151700 Gossypium raimondii HOM05D005574 ORTHO05D007102 3.4e-78 296.2 338 49.7
Nitab4.5_0004135g0020 Nicotiana tabacum HOM05D005574 ORTHO05D007102 3.4e-78 296.2 321 49.8
Actinidia23520 Actinidia chinensis HOM05D005574 ORTHO05D007102 9.8e-78 294.7 365 46.6
Nitab4.5_0001920g0060 Nicotiana tabacum HOM05D005574 ORTHO05D007102 1.7e-77 293.9 324 49.1
Nn6g34090 Nelumbo nucifera HOM05D005574 ORTHO05D007102 3.7e-77 292.7 336 46.1
Cc03_g03930 Coffea canephora HOM05D005574 ORTHO05D007102 1.1e-76 291.2 351 46.7
Rhsim04G0201500 Rhododendron simsii HOM05D005574 ORTHO05D007102 3.2e-76 289.7 351 45.6
Gohir.A10G129500 Gossypium hirsutum HOM05D005574 ORTHO05D007102 4.1e-76 289.3 338 48.8
Manes.03G177100 Manihot esculenta HOM05D005574 ORTHO05D007102 4.1e-76 289.3 350 46.3
Gohir.D10G136700 Gossypium hirsutum HOM05D005574 ORTHO05D007102 5.4e-76 288.9 338 49.1
Hma1.2p1_0602F.1_g187410 Hydrangea macrophylla HOM05D005574 ORTHO05D007102 1.2e-75 287.7 329 48.3
MSTRG.4036 Avicennia marina HOM05D005574 ORTHO05D007102 1.3e-74 284.3 329 48.3
MELO3C006525.2 Cucumis melo HOM05D005574 ORTHO05D007102 2.3e-74 283.5 348 44.0
ClCG05G005090 Citrullus lanatus HOM05D005574 ORTHO05D007102 3.9e-74 282.7 347 44.4
Oeu058969.1 Olea europaea HOM05D005574 ORTHO05D007102 5.6e-73 278.9 336 47.6
CsaV3_3G013190 Cucumis sativus L. HOM05D005574 ORTHO05D007102 7.3e-73 278.5 348 43.7
Dinv14005 Davidia involucrata HOM05D005574 ORTHO05D007102 1.1e-71 274.6 338 48.2
Sopen09g031060 Solanum pennellii HOM05D005574 ORTHO05D007102 1.1e-71 274.6 344 44.8
Solyc09g082180.3 Solanum lycopersicum HOM05D005574 ORTHO05D007102 6.8e-71 271.9 340 44.7
Sed0027704 Sechium edule HOM05D005574 ORTHO05D007102 8.9e-71 271.6 349 44.1
Sed0003604 Sechium edule HOM05D005574 ORTHO05D007102 1.3e-69 267.7 351 45.6
Aqoxy2G03411 Aquilegia oxysepala HOM05D005574 ORTHO05D007102 2.2e-69 266.9 337 45.4
PSO210G4004 Papaver somniferum HOM05D005574 ORTHO05D007102 2.9e-69 266.5 347 44.4
Migut.G00347 Erythranthe guttata HOM05D005574 ORTHO05D007102 8.3e-69 265.0 333 45.9
MSTRG.9977 Avicennia marina HOM05D005574 ORTHO05D007102 2.4e-68 263.5 357 43.4
DCAR_030644 Daucus carota HOM05D005574 ORTHO05D007102 7.1e-68 261.9 337 44.2
Hund12118 Selenicereus undatus HOM05D005574 ORTHO05D007102 7.8e-67 258.5 335 44.2
Duzib151G0572 Durio zibethinus HOM05D005574 ORTHO05D007102 3.0e-66 256.5 299 47.2
SGA_v2.0_scaffold257G45710 Striga asiatica HOM05D005574 ORTHO05D007102 3.3e-65 253.1 331 42.9
THA.LOC104800960 Tarenaya hassleriana HOM05D005574 ORTHO05D007102 9.5e-65 251.5 366 41.3
PSO761G0453 Papaver somniferum HOM05D005574 ORTHO05D007102 1.6e-64 250.8 346 43.1
Sp1g04310 Schrenkiella parvula HOM05D005574 ORTHO05D007102 2.1e-64 250.4 330 41.5
Sc19g0004060 Simmondsia chinensis HOM05D005574 ORTHO05D007102 2.1e-64 250.4 317 43.5
Thhalv10002568m.g Eutrema salsugineum HOM05D005574 ORTHO05D007102 1.1e-63 248.1 348 38.5
SalBow2G1029 Salvia bowleyana HOM05D005574 ORTHO05D007102 1.1e-63 248.1 357 40.9
Eucgr.B01081 Eucalyptus grandis HOM05D005574 ORTHO05D007102 6.8e-63 245.4 307 45.6
BcaB02g06860 Brassica carinata HOM05D005574 ORTHO05D007102 1.5e-62 244.2 360 37.8
Ah.13g071610 Amaranthus hybridus HOM05D005574 ORTHO05D007102 2.6e-62 243.4 353 39.7
AL1G15280 Arabidopsis lyrata HOM05D005574 ORTHO05D007102 4.4e-62 242.7 336 39.6
Aa31LG1G19200 Aethionema arabicum HOM05D005574 ORTHO05D007102 9.9e-62 241.5 317 42.6
EL10Ac3g06494 Beta vulgaris HOM05D005574 ORTHO05D007102 9.9e-62 241.5 329 40.4
AUR62034712 Chenopodium quinoa HOM05D005574 ORTHO05D007102 2.9e-61 240.0 361 38.5
BcaC05g24386 Brassica carinata HOM05D005574 ORTHO05D007102 8.4e-61 238.4 351 38.5
C05p03780 Brassica napus HOM05D005574 ORTHO05D007102 8.4e-61 238.4 351 38.5
BolC5t29155H Brassica oleracea HOM05D005574 ORTHO05D007102 8.4e-61 238.4 351 38.5
A10p04140 Brassica napus HOM05D005574 ORTHO05D007102 1.1e-60 238.0 347 39.2
BraA10t42684Z Brassica rapa HOM05D005574 ORTHO05D007102 1.1e-60 238.0 347 39.2
PGR142G0953 Punica granatum HOM05D005574 ORTHO05D007102 2.4e-60 236.9 327 42.5
AUR62033680 Chenopodium quinoa HOM05D005574 ORTHO05D007102 9.2e-60 235.0 304 43.4
Lsat_1_v5_gn_5_104360 Lactuca sativa HOM05D005574 ORTHO05D007102 3.5e-59 233.0 328 41.5
CARHR004930 Cardamine hirsuta HOM05D005574 ORTHO05D007102 1.3e-58 231.1 335 39.1
HanXRQChr10g0294751 Helianthus annuus HOM05D005574 ORTHO05D007102 3.6e-56 223.0 328 39.6
Potri.008G154400 Populus trichocarpa HOM05D005574 ORTHO05D007102 4.4e-54 216.1 259 49.4
CDE07G0532 Ceratophyllum demersum HOM05D005574 ORTHO05D007102 5.8e-54 215.7 320 39.1
ATR0697G187 Amborella trichopoda HOM05D005574 ORTHO05D007102 3.8e-53 213.0 311 39.2
Carub.0001s0477 Capsella rubella HOM05D005574 ORTHO05D007102 6.4e-53 212.2 330 35.5
CAN.G2204.2 Capsicum annuum HOM05D000340 ORTHO05D007102 2.7e-51 206.8 173 55.5
ECA234G0493 Erigeron canadensis HOM05D005574 ORTHO05D007102 1.0e-50 204.9 342 38.6
AT1G05440 Arabidopsis thaliana HOM05D005574 ORTHO05D007102 5.6e-49 199.1 353 36.0
HPP92_009613 Vanilla planifolia HOM05D005574 ORTHO05D007102 7.3e-49 198.7 337 38.6
MBI15_g31435_MAGBIO Magnolia biondii HOM05D005574 ORTHO05D007102 2.4e-47 193.7 262 40.5
CAN.G2204.4 Capsicum annuum HOM05D005574 ORTHO05D007102 4.9e-45 186.0 226 46.0
SEGI_38250 Sequoiadendron giganteum HOM05D005574 ORTHO05D007102 5.4e-44 182.6 348 32.5
CDE06G2673 Ceratophyllum demersum HOM05D005574 ORTHO05D007102 2.8e-40 170.2 249 41.8
Os03g0747100 Oryza sativa ssp. japonica HOM05D005574 ORTHO05D007102 3.7e-40 169.9 315 36.8
Zm00001eb057090 Zea mays HOM05D005574 ORTHO05D007102 4.0e-39 166.4 309 35.6
Actinidia40140 Actinidia chinensis HOM05D005574 ORTHO05D007102 1.1e-36 158.3 138 57.2
ECA234G4095 Erigeron canadensis HOM05D005574 ORTHO05D007102 2.4e-36 157.1 184 46.2
SMO174G0025 Selaginella moellendorffii HOM05D005574 ORTHO05D007102 3.0e-34 150.2 325 30.5
Cpa.g.sc58.90 Carica papaya HOM05D005574 ORTHO05D007102 1.4e-31 141.4 118 53.4
BolC5t33236H Brassica oleracea HOM05D005574 ORTHO05D007102 3.1e-31 140.2 186 37.6
BolC1t04542H Brassica oleracea HOM05D005574 ORTHO05D007102 9.0e-31 138.7 191 36.1
C01p35960 Brassica napus HOM05D005574 ORTHO05D007102 1.0e-29 135.2 151 41.1
unitig_32.g11728 Utricularia gibba HOM05D005574 ORTHO05D007102 2.9e-29 133.7 332 29.5
C03p05690 Brassica napus HOM05D005574 ORTHO05D022054 6.7e-26 122.5 99 53.5
AagrBONN_evm.TU.Sc2ySwM_117.3111 Anthoceros agrestis HOM05D005574 ORTHO05D007102 6.5e-21 105.9 272 26.8
BolC1t03554H Brassica oleracea HOM05D005574 ORTHO05D022054 1.1e-20 105.1 90 51.1
BcaC07g42131 Brassica carinata HOM05D005574 ORTHO05D007102 5.7e-17 92.8 105 42.9
C08p51720 Brassica napus HOM05D005574 ORTHO05D007102 5.7e-17 92.8 105 42.9
A02p27770 Brassica napus HOM05D005574 ORTHO05D007102 4.8e-16 89.7 108 40.7
BraA02t07818Z Brassica rapa HOM05D005574 ORTHO05D007102 4.8e-16 89.7 108 40.7
BcaC09g49493 Brassica carinata HOM05D005574 ORTHO05D007102 6.3e-16 89.4 145 33.1
BolC3t13081H Brassica oleracea HOM05D005574 ORTHO05D007102 6.3e-16 89.4 107 40.2
A03p47670 Brassica napus HOM05D005574 ORTHO05D007102 8.2e-16 89.0 107 40.2
BraA09t37853Z Brassica rapa HOM05D005574 ORTHO05D007102 8.2e-16 89.0 107 40.2
BcaB07g33702 Brassica carinata HOM05D005574 ORTHO05D007102 1.4e-15 88.2 201 28.9
A09p67440 Brassica napus HOM05D005574 ORTHO05D007102 1.4e-15 88.2 91 47.3
BraA07t27929Z Brassica rapa HOM05D005574 ORTHO05D007102 5.3e-15 86.3 108 38.9
BraA09t41109Z Brassica rapa HOM05D005574 ORTHO05D007102 6.9e-15 85.9 85 49.4
A09p57160 Brassica napus HOM05D005574 ORTHO05D007102 2.2e-13 80.9 61 59.0
C01p45800 Brassica napus HOM05D005574 ORTHO05D007102 1.4e-12 78.2 151 29.1
BcaC09g48798 Brassica carinata HOM05D005574 ORTHO05D007102 4.2e-12 76.6 95 37.9
Sabra08G0117800 Salix brachista HOM05D000633 ORTHO05D000477 3.6e-11 73.6 74 45.9


User provided reference genes

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