Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G5474 Trifolium pratense HOM05D003253 ORTHO05D002078 5.0e-73 277.7 143 100.0
TPR.G5553 Trifolium pratense HOM05D003253 ORTHO05D002078 5.9e-42 174.5 132 69.7
Ca_10889_v3 Cicer arietinum L. HOM05D003253 ORTHO05D002078 5.6e-32 141.4 131 60.3
Ca_30336_v3 Cicer arietinum L. HOM05D003253 ORTHO05D002078 5.6e-32 141.4 131 60.3
Psat6g188240 Pisum sativum HOM05D003253 ORTHO05D002078 1.0e-30 137.1 131 56.5
Psat0s3046g0120 Pisum sativum HOM05D003253 ORTHO05D002078 4.4e-29 131.7 138 52.9
Psat6g206800 Pisum sativum HOM05D003253 ORTHO05D002078 2.9e-28 129.0 138 52.2
Medtr1g103600 Medicago truncatula HOM05D003253 ORTHO05D002078 1.9e-24 116.3 127 51.2
Ca_24401_v3 Cicer arietinum L. HOM05D003253 ORTHO05D002078 2.6e-21 105.9 109 51.4
Lalb_Chr09g0319891 Lupinus albus HOM05D003253 ORTHO05D002078 4.4e-21 105.1 110 51.8
COL.COLO4_21490 Corchorus olitorius HOM05D003253 ORTHO05D002078 5.8e-21 104.8 109 50.5
Duzib052G0544 Durio zibethinus HOM05D003253 ORTHO05D002078 5.8e-21 104.8 109 49.5
Lalb_Chr05g0211011 Lupinus albus HOM05D003253 ORTHO05D002078 2.2e-20 102.8 110 50.9
Gohir.D09G055900 Gossypium hirsutum HOM05D003253 ORTHO05D002078 1.4e-19 100.1 132 41.7
Gorai.006G069200 Gossypium raimondii HOM05D003253 ORTHO05D002078 1.4e-19 100.1 132 41.7
Gohir.A09G056601 Gossypium hirsutum HOM05D003253 ORTHO05D002078 3.2e-19 99.0 132 40.9
Eucgr.H03454 Eucalyptus grandis HOM05D003253 ORTHO05D002078 5.4e-19 98.2 135 38.5
Thecc.04G233500 Theobroma cacao HOM05D003253 ORTHO05D002078 5.4e-19 98.2 132 40.2
Manes.03G177500 Manihot esculenta HOM05D003253 ORTHO05D002078 9.2e-19 97.4 130 42.3
Hma1.2p1_0602F.1_g187400 Hydrangea macrophylla HOM05D003253 ORTHO05D002078 1.6e-18 96.7 130 40.0
Sabra10G0056900 Salix brachista HOM05D003253 ORTHO05D002078 3.5e-18 95.5 106 48.1
arahy.Tifrunner.gnm1.ann1.2A778E Arachis hypogaea HOM05D003253 ORTHO05D002078 6.0e-18 94.7 130 45.4
LjContig00408g0013219 Lotus japonicus HOM05D003253 ORTHO05D002078 6.0e-18 94.7 104 50.0
Peaxi162Scf00092g00617 Petunia axillaris HOM05D003253 ORTHO05D002078 1.3e-17 93.6 109 45.9
Sopen09g031020 Solanum pennellii HOM05D003253 ORTHO05D002078 1.3e-17 93.6 133 38.3
Solyc09g082140.4 Solanum lycopersicum HOM05D003253 ORTHO05D002078 2.3e-17 92.8 133 38.3
TWI73G0819 Tripterygium wilfordii HOM05D003253 ORTHO05D002078 2.3e-17 92.8 130 40.8
Cpa.g.sc1512.1 Carica papaya HOM05D003253 ORTHO05D002078 3.0e-17 92.4 126 38.9
CSS0040917 Camellia sinensis var. sinensis HOM05D003253 ORTHO05D002078 3.9e-17 92.0 108 43.5
VMungo1215G2555 Vigna mungo HOM05D003253 ORTHO05D002078 3.9e-17 92.0 103 46.6
arahy.Tifrunner.gnm1.ann1.ETQ115 Arachis hypogaea HOM05D003253 ORTHO05D002078 5.0e-17 91.7 130 43.8
Eucgr.H03453 Eucalyptus grandis HOM05D003253 ORTHO05D002078 5.0e-17 91.7 104 46.2
Nitab4.5_0001342g0020 Nicotiana tabacum HOM05D003253 ORTHO05D002078 5.0e-17 91.7 109 45.9
TWI53G2057 Tripterygium wilfordii HOM05D003253 ORTHO05D002078 5.0e-17 91.7 109 44.0
Oeu049061.1 Olea europaea HOM05D003253 ORTHO05D002078 1.1e-16 90.5 131 40.5
Ciclev10004835m.g Citrus clementina HOM05D003253 ORTHO05D002078 1.5e-16 90.1 104 45.2
Dinv14001 Davidia involucrata HOM05D003253 ORTHO05D002078 1.5e-16 90.1 130 38.5
Glyma.18G119500 Glycine max HOM05D003253 ORTHO05D002078 1.5e-16 90.1 104 49.0
Nitab4.5_0001920g0020 Nicotiana tabacum HOM05D003253 ORTHO05D002078 1.5e-16 90.1 109 45.9
PGSC0003DMG400032262 Solanum tuberosum HOM05D003253 ORTHO05D002078 1.5e-16 90.1 109 44.0
MBI12_g36454_MAGBIO Magnolia biondii HOM05D003253 ORTHO05D002078 1.9e-16 89.7 107 46.7
Glyma.01G237400 Glycine max HOM05D003253 ORTHO05D002078 3.3e-16 89.0 104 48.1
TPR.G37906 Trifolium pratense HOM05D003253 ORTHO05D002664 3.3e-16 89.0 108 44.4
TPR.G37995 Trifolium pratense HOM05D003253 ORTHO05D002078 4.3e-16 88.6 126 39.7
TAR633G1510 Trochodendron aralioides HOM05D003253 ORTHO05D002078 4.3e-16 88.6 114 43.9
DCAR_030641 Daucus carota HOM05D003253 ORTHO05D002078 5.6e-16 88.2 107 45.8
Lj6C607G12 Lonicera japonica HOM05D003253 ORTHO05D002078 5.6e-16 88.2 109 42.2
QL06p002114 Quercus lobata HOM05D003253 ORTHO05D002078 7.3e-16 87.8 126 38.1
RhsimUnG0259000 Rhododendron simsii HOM05D003253 ORTHO05D002078 9.5e-16 87.4 148 35.8
Atru.chr4.2451 Acer truncatum HOM05D003253 ORTHO05D002078 1.2e-15 87.0 124 38.7
Lalb_Chr25g0279741 Lupinus albus HOM05D003253 ORTHO05D002078 1.2e-15 87.0 104 46.2
MD13G1194400 Malus domestica HOM05D003253 ORTHO05D002078 1.2e-15 87.0 117 41.9
Psat4g210160 Pisum sativum HOM05D003253 ORTHO05D002078 1.2e-15 87.0 104 46.2
Sc19g0004070 Simmondsia chinensis HOM05D003253 ORTHO05D002078 1.2e-15 87.0 101 45.5
BcaC05g24388 Brassica carinata HOM05D003253 ORTHO05D002078 1.6e-15 86.7 115 43.5
Carub.0001s0475 Capsella rubella HOM05D003253 ORTHO05D002078 2.1e-15 86.3 106 45.3
Cc03_g03900 Coffea canephora HOM05D003253 ORTHO05D002078 2.1e-15 86.3 109 44.0
AT1G05410 Arabidopsis thaliana HOM05D003253 ORTHO05D002078 2.8e-15 85.9 106 44.3
A10p04120 Brassica napus HOM05D003253 ORTHO05D002078 3.6e-15 85.5 106 46.2
BraA10t42682Z Brassica rapa HOM05D003253 ORTHO05D002078 3.6e-15 85.5 106 46.2
CANSAT78G2304 Cannabis sativa HOM05D003253 ORTHO05D002078 3.6e-15 85.5 120 40.0
Lj5g0003807 Lotus japonicus HOM05D003253 ORTHO05D002078 3.6e-15 85.5 112 47.3
Aqoxy2G03403 Aquilegia oxysepala HOM05D003253 ORTHO05D002078 6.2e-15 84.7 135 34.8
BcaB02g06862 Brassica carinata HOM05D003253 ORTHO05D002078 6.2e-15 84.7 106 45.3
Prupe.1G015300 Prunus persica HOM05D003253 ORTHO05D002078 6.2e-15 84.7 113 45.1
Actinidia25641 Actinidia chinensis HOM05D003253 ORTHO05D002078 8.1e-15 84.3 111 42.3
Actinidia35275 Actinidia chinensis HOM05D003253 ORTHO05D002078 8.1e-15 84.3 111 42.3
AL1G15260 Arabidopsis lyrata HOM05D003253 ORTHO05D002078 8.1e-15 84.3 106 43.4
BcaC05g24390 Brassica carinata HOM05D003253 ORTHO05D002078 8.1e-15 84.3 106 45.3
C05p03760 Brassica napus HOM05D003253 ORTHO05D002078 8.1e-15 84.3 106 45.3
BolC5t29153H Brassica oleracea HOM05D003253 ORTHO05D002078 8.1e-15 84.3 106 45.3
Medtr5g006390 Medicago truncatula HOM05D003253 ORTHO05D002078 8.1e-15 84.3 126 40.5
Actinidia25640 Actinidia chinensis HOM05D003253 ORTHO05D002078 1.1e-14 84.0 106 41.5
Actinidia35276 Actinidia chinensis HOM05D003253 ORTHO05D002078 1.1e-14 84.0 106 41.5
CiPaw.02G097800 Carya illinoinensis HOM05D003253 ORTHO05D002078 1.4e-14 83.6 106 44.3
PGR004G2151 Punica granatum HOM05D003253 ORTHO05D002078 1.8e-14 83.2 118 41.5
Sp1g04290 Schrenkiella parvula HOM05D003253 ORTHO05D002078 1.8e-14 83.2 106 44.3
Sed0019594 Sechium edule HOM05D003253 ORTHO05D002078 1.8e-14 83.2 105 41.9
Sed0023955 Sechium edule HOM05D003253 ORTHO05D002078 1.8e-14 83.2 106 47.2
Haze_00887 Corylus avellana HOM05D003253 ORTHO05D002078 3.1e-14 82.4 112 42.9
Cfa015661 Carpinus fangiana HOM05D003253 ORTHO05D002078 5.2e-14 81.6 112 42.9
Thhalv10007544m.g Eutrema salsugineum HOM05D003253 ORTHO05D002078 5.2e-14 81.6 106 44.3
Glyma.11G006000 Glycine max HOM05D003253 ORTHO05D002078 5.2e-14 81.6 104 46.2
SalBow3G1993 Salvia bowleyana HOM05D003253 ORTHO05D002078 5.2e-14 81.6 110 43.6
vmacro09557 Vaccinium macrocarpon HOM05D003253 ORTHO05D002078 6.8e-14 81.3 103 45.6
ClCG05G005130 Citrullus lanatus HOM05D003253 ORTHO05D002078 1.5e-13 80.1 106 42.5
THA.LOC104800959 Tarenaya hassleriana HOM05D003253 ORTHO05D002078 2.0e-13 79.7 109 40.4
CiPaw.01G167300 Carya illinoinensis HOM05D003253 ORTHO05D002078 2.6e-13 79.3 106 41.5
AUR62025569 Chenopodium quinoa HOM05D003253 ORTHO05D002078 3.4e-13 79.0 125 36.0
Nn1g02344 Nelumbo nucifera HOM05D003253 ORTHO05D002078 3.4e-13 79.0 113 42.5
vmacro09558 Vaccinium macrocarpon HOM05D003253 ORTHO05D002078 3.4e-13 79.0 103 42.7
PGR004G0591 Punica granatum HOM05D003253 ORTHO05D002078 4.4e-13 78.6 118 39.0
RcHm_v2.0_Chr4g0416001 Rosa chinensis HOM05D003253 ORTHO05D002078 4.4e-13 78.6 133 37.6
BcaC05g24391 Brassica carinata HOM05D003253 ORTHO05D002078 5.8e-13 78.2 118 41.5
MELO3C006528.2 Cucumis melo HOM05D003253 ORTHO05D002078 5.8e-13 78.2 106 42.5
Hund12120 Selenicereus undatus HOM05D003253 ORTHO05D002078 5.8e-13 78.2 105 37.1
CsaV3_3G013260 Cucumis sativus L. HOM05D003253 ORTHO05D002078 7.5e-13 77.8 106 42.5
AUR62008677 Chenopodium quinoa HOM05D003253 ORTHO05D002078 9.9e-13 77.4 125 36.0
Migut.N00190 Erythranthe guttata HOM05D003253 ORTHO05D002078 9.9e-13 77.4 109 38.5
Aa31LG1G19210 Aethionema arabicum HOM05D003253 ORTHO05D002078 1.3e-12 77.0 109 38.5
ATR0697G249 Amborella trichopoda HOM05D003253 ORTHO05D002078 1.3e-12 77.0 118 39.8
CAN.G1094.7 Capsicum annuum HOM05D003253 ORTHO05D002078 2.2e-12 76.3 102 42.2
TWI09G0550 Tripterygium wilfordii HOM05D003253 ORTHO05D002078 2.9e-12 75.9 129 38.8
PGR004G0723 Punica granatum HOM05D003253 ORTHO05D002078 8.3e-12 74.3 120 38.3
BcaB05g24279 Brassica carinata HOM05D003253 ORTHO05D002078 1.4e-11 73.6 98 43.9
BcaB05g24280 Brassica carinata HOM05D003253 ORTHO05D002078 1.4e-11 73.6 98 43.9
FAN22G0721 Fragaria x ananassa HOM05D003253 ORTHO05D002078 1.9e-11 73.2 125 36.0
DCAR_002383 Daucus carota HOM05D003253 ORTHO05D002078 4.1e-11 72.0 105 39.0
FvH4_4g16310 Fragaria vesca HOM05D003253 ORTHO05D002078 5.4e-11 71.6 120 36.7
FAN07G1764 Fragaria x ananassa HOM05D003253 ORTHO05D002078 5.4e-11 71.6 113 38.1
FAN12G2226 Fragaria x ananassa HOM05D003253 ORTHO05D002078 5.4e-11 71.6 120 36.7
PSO832G3307 Papaver somniferum HOM05D003253 ORTHO05D002078 5.4e-11 71.6 112 36.6
PSO210G1140 Papaver somniferum HOM05D003253 ORTHO05D002078 1.6e-10 70.1 112 36.6
GSVIVG01017993001 Vitis vinifera HOM05D003253 ORTHO05D002078 1.6e-10 70.1 106 36.8
Phvul.002G045300 Phaseolus vulgaris HOM05D003253 ORTHO05D002078 3.5e-10 68.9 126 33.3
Os03g0747200 Oryza sativa ssp. japonica HOM05D003253 ORTHO05D002078 4.6e-10 68.6 125 33.6
HPP92_009611 Vanilla planifolia HOM05D003253 ORTHO05D002078 7.8e-10 67.8 140 30.0
DCAR_027222 Daucus carota HOM05D003253 ORTHO05D002078 1.0e-09 67.4 112 33.9
ECA240G1510 Erigeron canadensis HOM05D003253 ORTHO05D002078 2.3e-09 66.2 109 36.7
Phvul.002G044800 Phaseolus vulgaris HOM05D003253 ORTHO05D002078 3.0e-09 65.9 103 37.9
Aqoxy5G00455 Aquilegia oxysepala HOM05D003253 ORTHO05D002078 5.1e-09 65.1 112 33.0
Lsat_1_v5_gn_7_64380 Lactuca sativa HOM05D003253 ORTHO05D002078 6.6e-09 64.7 109 34.9
DCAR_027224 Daucus carota HOM05D003253 ORTHO05D002078 1.1e-08 63.9 107 33.6
Zm00001eb057100 Zea mays HOM05D003253 ORTHO05D002078 1.1e-08 63.9 106 35.8
PSO761G0482 Papaver somniferum HOM05D003253 ORTHO05D002078 4.3e-08 62.0 112 33.9
CARHR004920 Cardamine hirsuta HOM05D003253 ORTHO05D002078 9.5e-08 60.8 106 38.7
MSTRG.24737 Avicennia marina HOM05D003253 ORTHO05D002078 2.1e-07 59.7 109 34.9
Cpa.g.sc58.96 Carica papaya HOM05D003253 ORTHO05D002078 4.7e-07 58.5 70 45.7
CARHR054150 Cardamine hirsuta HOM05D003253 ORTHO05D002078 8.1e-07 57.8 97 37.1
HanXRQChr09g0248261 Helianthus annuus HOM05D003253 ORTHO05D002078 2.4e-06 56.2 103 33.0
PSO210G5071 Papaver somniferum HOM05D003253 ORTHO05D002078 8.9e-06 54.3 114 36.0


User provided reference genes

Program Settings