Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G5472 Trifolium pratense HOM05D003755 ORTHO05D004385 1.2e-161 573.2 296 100.0
Psat6g210560 Pisum sativum HOM05D003755 ORTHO05D004385 1.7e-136 489.6 345 74.8
Ca_10975_v3 Cicer arietinum L. HOM05D003755 ORTHO05D004385 5.7e-132 474.6 346 71.4
Medtr1g105470 Medicago truncatula HOM05D003755 ORTHO05D004385 5.7e-132 474.6 346 73.4
VMungo0720G2911 Vigna mungo HOM05D003755 ORTHO05D004385 1.5e-119 433.3 255 83.1
Lj5g0019176 Lotus japonicus HOM05D003755 ORTHO05D004385 1.6e-118 429.9 255 82.0
Phvul.007G053000 Phaseolus vulgaris HOM05D003755 ORTHO05D004385 1.5e-116 423.3 255 81.2
Glyma.10G251600 Glycine max HOM05D003755 ORTHO05D004385 2.0e-116 422.9 255 81.2
Glyma.20G141900 Glycine max HOM05D003755 ORTHO05D004385 1.7e-115 419.9 255 79.2
Lalb_Chr21g0307811 Lupinus albus HOM05D003755 ORTHO05D004385 6.8e-109 397.9 256 74.2
CANSAT56G3751 Cannabis sativa HOM05D003755 ORTHO05D004385 1.7e-107 393.3 257 72.4
Prupe.4G025400 Prunus persica HOM05D003755 ORTHO05D004385 1.2e-105 387.1 257 70.8
MD00G1180300 Malus domestica HOM05D003755 ORTHO05D004385 1.6e-105 386.7 273 66.3
QL05p074736 Quercus lobata HOM05D003755 ORTHO05D004385 1.1e-103 380.6 254 70.9
TWI38G1592 Tripterygium wilfordii HOM05D003755 ORTHO05D004385 1.9e-103 379.8 256 70.7
Cfa000266 Carpinus fangiana HOM05D003755 ORTHO05D004385 2.5e-103 379.4 255 70.6
FvH4_3g02600 Fragaria vesca HOM05D003755 ORTHO05D004385 4.3e-103 378.6 279 67.0
FAN21G0915 Fragaria x ananassa HOM05D003755 ORTHO05D004385 1.2e-102 377.1 280 66.4
TWI38G1222 Tripterygium wilfordii HOM05D003755 ORTHO05D004385 1.2e-102 377.1 257 69.6
Cpa.g.sc198.13 Carica papaya HOM05D003755 ORTHO05D004385 3.6e-102 375.6 259 71.0
CiPaw.09G088000 Carya illinoinensis HOM05D003755 ORTHO05D004385 6.2e-102 374.8 264 66.7
Manes.16G011500 Manihot esculenta HOM05D003755 ORTHO05D004385 1.4e-101 373.6 256 69.9
Eucgr.E04113 Eucalyptus grandis HOM05D003755 ORTHO05D004385 4.0e-101 372.1 257 70.8
Thecc.06G215100 Theobroma cacao HOM05D003755 ORTHO05D004385 5.2e-101 371.7 257 70.8
MD10G1315200 Malus domestica HOM05D003755 ORTHO05D004385 1.2e-100 370.5 257 69.6
Duzib160G0429 Durio zibethinus HOM05D003755 ORTHO05D004385 5.8e-100 368.2 257 71.2
Hma1.2p1_0091F.1_g046190 Hydrangea macrophylla HOM05D003755 ORTHO05D004385 7.6e-100 367.9 281 67.6
Gohir.A06G145950 Gossypium hirsutum HOM05D003755 ORTHO05D004385 2.2e-99 366.3 266 68.4
CSS0017235 Camellia sinensis var. sinensis HOM05D003755 ORTHO05D004385 4.9e-99 365.2 279 68.1
CsaV3_6G049210 Cucumis sativus L. HOM05D003755 ORTHO05D004385 8.4e-99 364.4 257 68.9
FAN25G0829 Fragaria x ananassa HOM05D003755 ORTHO05D004385 1.1e-98 364.0 274 66.8
ClCG01G022150 Citrullus lanatus HOM05D003755 ORTHO05D004385 1.4e-98 363.6 257 69.6
Ciclev10015811m.g Citrus clementina HOM05D003755 ORTHO05D004385 1.4e-98 363.6 258 69.0
MBI18_g01410_MAGBIO Magnolia biondii HOM05D003755 ORTHO05D004385 4.1e-98 362.1 254 68.5
Dinv17826 Davidia involucrata HOM05D003755 ORTHO05D004385 7.1e-98 361.3 289 64.4
MELO3C007374.2 Cucumis melo HOM05D003755 ORTHO05D004385 9.2e-98 360.9 257 68.5
Aqoxy4G01977 Aquilegia oxysepala HOM05D003755 ORTHO05D004385 2.1e-97 359.8 254 69.3
Duzib192G0935 Durio zibethinus HOM05D003755 ORTHO05D004385 2.7e-97 359.4 257 68.9
Oeu016525.1 Olea europaea HOM05D003755 ORTHO05D004385 2.7e-97 359.4 275 65.5
PGR004G2273 Punica granatum HOM05D003755 ORTHO05D004385 2.7e-97 359.4 271 63.8
CSS0014334 Camellia sinensis var. sinensis HOM05D003755 ORTHO05D004385 1.0e-96 357.5 257 70.4
AUR62012654 Chenopodium quinoa HOM05D003755 ORTHO05D004385 3.0e-96 355.9 276 63.4
Rhsim13G0157400 Rhododendron simsii HOM05D003755 ORTHO05D004385 3.9e-96 355.5 257 68.1
Sc05g0008910 Simmondsia chinensis HOM05D003755 ORTHO05D004385 8.6e-96 354.4 292 59.9
Potri.011G025700 Populus trichocarpa HOM05D003755 ORTHO05D004385 1.5e-95 353.6 272 64.3
Gohir.D05G171400 Gossypium hirsutum HOM05D003755 ORTHO05D004385 1.9e-95 353.2 279 64.9
THA.LOC104823520 Tarenaya hassleriana HOM05D003755 ORTHO05D004385 3.3e-95 352.4 257 66.5
THA.LOC104809515 Tarenaya hassleriana HOM05D003755 ORTHO05D004385 5.6e-95 351.7 257 65.8
Ah.09g235250 Amaranthus hybridus HOM05D003755 ORTHO05D004385 7.3e-95 351.3 254 66.5
EL10Ac8g19999 Beta vulgaris HOM05D003755 ORTHO05D004385 7.3e-95 351.3 276 63.8
Atru.chr10.2154 Acer truncatum HOM05D003755 ORTHO05D004385 1.2e-94 350.5 288 61.1
Sabra11G0016200 Salix brachista HOM05D003755 ORTHO05D004385 2.8e-94 349.4 270 64.8
Sabra11G0021900 Salix brachista HOM05D003755 ORTHO05D004385 2.8e-94 349.4 270 64.8
Gohir.A05G168300 Gossypium hirsutum HOM05D003755 ORTHO05D004385 3.6e-94 349.0 279 64.5
TAR626G0320 Trochodendron aralioides HOM05D003755 ORTHO05D004385 1.1e-93 347.4 256 66.0
Migut.H01555 Erythranthe guttata HOM05D003755 ORTHO05D004385 2.4e-93 346.3 255 65.1
Atru.chr10.2153 Acer truncatum HOM05D003755 ORTHO05D004385 3.1e-93 345.9 282 62.8
Thhalv10023566m.g Eutrema salsugineum HOM05D003755 ORTHO05D004385 5.2e-93 345.1 257 66.5
Lalb_Chr06g0164871 Lupinus albus HOM05D003755 ORTHO05D004385 8.9e-93 344.4 280 62.1
Aa31LG2G9060 Aethionema arabicum HOM05D003755 ORTHO05D004385 2.6e-92 342.8 257 65.8
Cc02_g11630 Coffea canephora HOM05D003755 ORTHO05D004385 4.4e-92 342.0 255 66.3
MSTRG.14647 Avicennia marina HOM05D003755 ORTHO05D004385 5.8e-92 341.7 257 65.8
Lsat_1_v5_gn_4_58721 Lactuca sativa HOM05D003755 ORTHO05D004385 5.8e-92 341.7 256 66.4
ECA234G3589 Erigeron canadensis HOM05D003755 ORTHO05D004385 2.9e-91 339.3 256 65.2
Manes.17G035900 Manihot esculenta HOM05D003755 ORTHO05D004385 2.9e-91 339.3 256 63.7
AT1G61790 Arabidopsis thaliana HOM05D003755 ORTHO05D004385 3.8e-91 339.0 257 65.4
A01p30670 Brassica napus HOM05D003755 ORTHO05D004385 3.8e-91 339.0 275 62.2
A01p30690 Brassica napus HOM05D003755 ORTHO05D004385 3.8e-91 339.0 275 62.2
CARHR050550 Cardamine hirsuta HOM05D003755 ORTHO05D004385 3.8e-91 339.0 258 64.7
PSO675G2634 Papaver somniferum HOM05D003755 ORTHO05D004385 3.8e-91 339.0 253 67.2
BcaC02g10535 Brassica carinata HOM05D003755 ORTHO05D004385 4.9e-91 338.6 265 63.4
C04p27760 Brassica napus HOM05D003755 ORTHO05D004385 4.9e-91 338.6 265 63.4
BolC4t24319H Brassica oleracea HOM05D003755 ORTHO05D004385 4.9e-91 338.6 265 63.4
AL2G14320 Arabidopsis lyrata HOM05D003755 ORTHO05D004385 6.4e-91 338.2 257 65.4
Carub.0002s0327 Capsella rubella HOM05D003755 ORTHO05D004385 6.4e-91 338.2 257 65.8
PSO541G6483 Papaver somniferum HOM05D003755 ORTHO05D004385 6.4e-91 338.2 253 66.8
unitig_26.g9395 Utricularia gibba HOM05D003755 ORTHO05D004385 6.4e-91 338.2 257 63.4
BraA01t03198Z Brassica rapa HOM05D003755 ORTHO05D004385 8.4e-91 337.8 275 61.8
C01p39060 Brassica napus HOM05D003755 ORTHO05D004385 1.4e-90 337.0 265 63.4
BolC1t03856H Brassica oleracea HOM05D003755 ORTHO05D004385 1.4e-90 337.0 265 63.4
BcaB04g20374 Brassica carinata HOM05D003755 ORTHO05D004385 2.4e-90 336.3 266 63.2
BcaC06g31863 Brassica carinata HOM05D003755 ORTHO05D004385 4.2e-90 335.5 265 63.0
Sopen03g005650 Solanum pennellii HOM05D003755 ORTHO05D004385 4.2e-90 335.5 255 65.5
Solyc03g031790.1 Solanum lycopersicum HOM05D003755 ORTHO05D004385 9.3e-90 334.3 255 65.1
Sp2g02750 Schrenkiella parvula HOM05D003755 ORTHO05D004385 1.6e-89 333.6 257 63.8
PGSC0003DMG400024071 Solanum tuberosum HOM05D003755 ORTHO05D004385 2.7e-89 332.8 255 64.3
DCAR_028162 Daucus carota HOM05D003755 ORTHO05D004385 6.0e-89 331.6 258 65.1
TAR624G0284 Trochodendron aralioides HOM05D003755 ORTHO05D004385 3.9e-88 328.9 254 63.0
COL.COLO4_31737 Corchorus olitorius HOM05D003755 ORTHO05D004385 1.5e-87 327.0 257 63.4
ATR0109G031 Amborella trichopoda HOM05D003755 ORTHO05D004385 2.1e-86 323.2 262 57.3
Sed0012988 Sechium edule HOM05D003755 ORTHO05D004385 2.4e-85 319.7 257 59.9
Os03g0565100 Oryza sativa ssp. japonica HOM05D003755 ORTHO05D004385 1.2e-84 317.4 272 55.9
Nn1g07049 Nelumbo nucifera HOM05D003755 ORTHO05D004385 2.6e-84 316.2 258 60.1
Zm00001eb043070 Zea mays HOM05D003755 ORTHO05D004385 7.6e-84 314.7 272 57.4
Gohir.D09G069500 Gossypium hirsutum HOM05D003755 ORTHO05D004385 4.9e-83 312.0 266 56.0
Gorai.006G083700 Gossypium raimondii HOM05D003755 ORTHO05D004385 4.9e-83 312.0 266 56.0
Nitab4.5_0000091g0500 Nicotiana tabacum HOM05D003755 ORTHO05D004385 1.4e-82 310.5 248 63.7
SGA_v2.0_scaffold114G32031 Striga asiatica HOM05D003755 ORTHO05D004385 1.9e-82 310.1 253 58.9
Dinv20022 Davidia involucrata HOM05D003755 ORTHO05D004385 4.2e-82 308.9 257 61.1
CDE05G0706 Ceratophyllum demersum HOM05D003755 ORTHO05D004385 2.7e-81 306.2 264 54.5
Thhalv10008090m.g Eutrema salsugineum HOM05D003755 ORTHO05D004385 1.0e-80 304.3 257 59.1
SEGI_11297 Sequoiadendron giganteum HOM05D003755 ORTHO05D004385 8.7e-80 301.2 253 59.7
Gorai.010G177400 Gossypium raimondii HOM05D003755 ORTHO05D004385 3.6e-78 295.8 266 59.0
Nitab4.5_0005793g0040 Nicotiana tabacum HOM05D003755 ORTHO05D004385 8.1e-78 294.7 279 54.8
SGA_v2.0_scaffold89G27449 Striga asiatica HOM05D003755 ORTHO05D004385 6.9e-77 291.6 294 51.4
AT1G11560 Arabidopsis thaliana HOM05D003755 ORTHO05D004385 1.2e-76 290.8 252 56.7
AL1G22670 Arabidopsis lyrata HOM05D003755 ORTHO05D004385 2.0e-76 290.0 252 56.7
Lj2A272T65 Lonicera japonica HOM05D003755 ORTHO05D004385 2.0e-76 290.0 257 57.6
Peaxi162Scf00079g00073 Petunia axillaris HOM05D003755 ORTHO05D004385 2.6e-76 289.7 234 65.0
Sp1g10170 Schrenkiella parvula HOM05D003755 ORTHO05D004385 4.5e-76 288.9 255 57.6
TWI38G0036 Tripterygium wilfordii HOM05D003755 ORTHO05D004385 8.4e-75 284.6 243 60.5
SalBow8G5594 Salvia bowleyana HOM05D003755 ORTHO05D004385 1.9e-74 283.5 267 52.8
MBI14_g15203_MAGBIO Magnolia biondii HOM05D003755 ORTHO05D004385 1.0e-72 277.7 205 64.9
Nitab4.5_0010745g0030 Nicotiana tabacum HOM05D003755 ORTHO05D004385 1.0e-72 277.7 191 69.6
AUR62021999 Chenopodium quinoa HOM05D003755 ORTHO05D004385 1.3e-72 277.3 189 68.3
SMO118G0372 Selaginella moellendorffii HOM05D003755 ORTHO05D004385 2.3e-72 276.6 266 52.3
CARHR011840 Cardamine hirsuta HOM05D003755 ORTHO05D004385 3.9e-72 275.8 256 55.5
Nitab4.5_0002196g0020 Nicotiana tabacum HOM05D003755 ORTHO05D004385 5.1e-72 275.4 250 55.2
Mapoly0061s0113 Marchantia polymorpha HOM05D003755 ORTHO05D004385 6.7e-72 275.0 256 50.4
AagrBONN_evm.TU.Sc2ySwM_362.2118 Anthoceros agrestis HOM05D003755 ORTHO05D004385 1.9e-71 273.5 263 51.7
PGSC0003DMG400002072 Solanum tuberosum HOM05D003755 ORTHO05D004385 1.9e-71 273.5 277 50.2
BcaB03g13253 Brassica carinata HOM05D003755 ORTHO05D004385 2.5e-71 273.1 279 50.5
CAN.G404.10 Capsicum annuum HOM05D003755 ORTHO05D004385 4.3e-71 272.3 189 69.3
Sopen02g024900 Solanum pennellii HOM05D003755 ORTHO05D004385 5.6e-71 271.9 277 50.2
Carub.0001s1117 Capsella rubella HOM05D003755 ORTHO05D004385 9.6e-71 271.2 252 54.0
HanXRQChr01g0003661 Helianthus annuus HOM05D003755 ORTHO05D004385 9.6e-71 271.2 257 52.1
Sabra04G0011400 Salix brachista HOM05D003755 ORTHO05D004385 9.6e-71 271.2 256 55.9
CDE11G0393 Ceratophyllum demersum HOM05D003755 ORTHO05D004385 1.3e-70 270.8 264 50.4
Solyc02g080180.1 Solanum lycopersicum HOM05D003755 ORTHO05D004385 3.7e-70 269.2 277 49.8
Lsat_1_v5_gn_1_121441 Lactuca sativa HOM05D003755 ORTHO05D004385 4.8e-70 268.9 256 51.6
Gohir.D06G152000 Gossypium hirsutum HOM05D003755 ORTHO05D004385 6.2e-70 268.5 205 65.9
PGSC0003DMG400010547 Solanum tuberosum HOM05D003755 ORTHO05D004385 6.2e-70 268.5 246 56.1
Nn1g03617 Nelumbo nucifera HOM05D003755 ORTHO05D004385 8.1e-70 268.1 177 68.4
Solyc10g008090.1 Solanum lycopersicum HOM05D003755 ORTHO05D004385 1.8e-69 266.9 246 55.7
Sopen10g003960 Solanum pennellii HOM05D003755 ORTHO05D004385 1.8e-69 266.9 246 55.7
Peaxi162Scf00241g00121 Petunia axillaris HOM05D003755 ORTHO05D004385 2.4e-69 266.5 246 55.3
MBI06_g27714_MAGBIO Magnolia biondii HOM05D003755 ORTHO05D004385 3.1e-69 266.2 189 66.1
Nitab4.5_0002196g0010 Nicotiana tabacum HOM05D000234 ORTHO05D004385 6.9e-69 265.0 244 57.8
Pp3c10_1910 Physcomitrium patens HOM05D003755 ORTHO05D004385 6.9e-69 265.0 272 49.3
Pp3c26_7270 Physcomitrium patens HOM05D003755 ORTHO05D004385 6.9e-69 265.0 272 48.5
Pp3c3_13650 Physcomitrium patens HOM05D003755 ORTHO05D004385 2.6e-68 263.1 272 48.5
BraA08t35260Z Brassica rapa HOM05D003755 ORTHO05D004385 4.5e-68 262.3 256 51.6
A08p33440 Brassica napus HOM05D003755 ORTHO05D004385 7.6e-68 261.5 256 51.6
CAN.G569.37 Capsicum annuum HOM05D003755 ORTHO05D004385 1.3e-67 260.8 278 48.9
C08p14530 Brassica napus HOM05D003755 ORTHO05D004385 2.5e-66 256.5 256 50.4
Nitab4.5_0002347g0110 Nicotiana tabacum HOM05D003755 ORTHO05D004385 2.1e-65 253.4 189 63.5
BcaC07g38668 Brassica carinata HOM05D003755 ORTHO05D004385 1.0e-64 251.1 257 49.4
BolC8t49101H Brassica oleracea HOM05D003755 ORTHO05D004385 1.0e-64 251.1 257 49.4
Haze_06749 Corylus avellana HOM05D003755 ORTHO05D004385 1.0e-64 251.1 172 68.6
AagrBONN_evm.TU.Sc2ySwM_362.2344 Anthoceros agrestis HOM05D003755 ORTHO05D004385 1.3e-64 250.8 264 46.2
Lj1A1226T40 Lonicera japonica HOM05D003755 ORTHO05D004385 1.9e-63 246.9 196 65.3
MBI19_g26612_MAGBIO Magnolia biondii HOM05D003755 ORTHO05D004385 1.4e-61 240.7 183 64.5
Gohir.A09G069600 Gossypium hirsutum HOM05D003755 ORTHO05D004385 1.4e-58 230.7 260 46.9
Peaxi162Scf00427g00012 Petunia axillaris HOM05D003755 ORTHO05D004385 7.9e-57 224.9 190 54.7
Nitab4.5_0002645g0040 Nicotiana tabacum HOM05D003755 ORTHO05D004385 7.4e-55 218.4 185 58.4
CBR_g36660 Chara braunii HOM05D003755 ORTHO05D004385 2.2e-54 216.9 258 46.9
TPR.G16992 Trifolium pratense HOM05D003755 ORTHO05D004385 2.1e-49 200.3 167 67.1
Actinidia26947 Actinidia chinensis HOM05D003755 ORTHO05D004385 6.1e-49 198.7 230 51.7
CBR_g46234 Chara braunii HOM05D003755 ORTHO05D004385 1.1e-45 188.0 254 40.9
CAN.G782.22 Capsicum annuum HOM05D003755 ORTHO05D004385 3.6e-41 172.9 175 52.0
Sed0022949 Sechium edule HOM05D003755 ORTHO05D004385 4.2e-34 149.4 147 51.7
Lsat_1_v5_gn_7_27941 Lactuca sativa HOM05D003755 ORTHO05D004385 1.4e-32 144.4 172 45.3
Lsat_1_v5_gn_3_29240 Lactuca sativa HOM05D003755 ORTHO05D004385 1.8e-32 144.1 243 37.0
Lsat_1_v5_gn_4_80500 Lactuca sativa HOM05D003755 ORTHO05D004385 5.3e-29 132.5 89 68.5
BcaC04g22351 Brassica carinata HOM05D003755 ORTHO05D004385 1.2e-28 131.3 104 64.4
Lsat_1_v5_gn_7_47961 Lactuca sativa HOM05D003755 ORTHO05D004385 5.0e-27 125.9 92 65.2
CAN.G782.12 Capsicum annuum HOM05D003755 ORTHO05D004385 4.0e-24 116.3 95 58.9
MD02G1269300 Malus domestica HOM05D003755 ORTHO05D004385 1.5e-23 114.4 77 68.8
QL08p007617 Quercus lobata HOM05D003755 ORTHO05D004385 4.4e-23 112.8 81 60.5
QL10p045362 Quercus lobata HOM05D003755 ORTHO05D004385 1.3e-22 111.3 80 61.2
MD02G1269200 Malus domestica HOM05D003755 ORTHO05D004385 6.3e-22 109.0 76 61.8
Cre16.g675602 Chlamydomonas reinhardtii HOM05D003755 ORTHO05D004385 1.2e-20 104.8 269 30.9
CAN.G782.11 Capsicum annuum HOM05D003755 ORTHO05D004385 5.0e-19 99.4 104 52.9
BraA01t03199Z Brassica rapa HOM05D003755 ORTHO05D004385 2.8e-14 83.6 94 51.1
C09p20250 Brassica napus HOM05D003755 ORTHO05D004385 4.9e-14 82.8 75 57.3
Lsat_1_v5_gn_7_47981 Lactuca sativa HOM05D003755 ORTHO05D004385 1.8e-13 80.9 66 68.2
EL10As1g23076 Beta vulgaris HOM05D003755 ORTHO05D004385 4.1e-13 79.7 48 77.1
BcaB07g31286 Brassica carinata HOM05D003755 ORTHO05D004385 4.3e-10 69.7 74 52.7
BolC9t54930H Brassica oleracea HOM05D003755 ORTHO05D004385 2.1e-09 67.4 57 54.4
AagrBONN_evm.TU.Sc2ySwM_228.3672 Anthoceros agrestis HOM05D003755 ORTHO05D004385 1.7e-06 57.8 69 44.9


User provided reference genes

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