Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G5462 Trifolium pratense HOM05D011581 ORTHO05D004175 3.6e-166 588.2 300 100.0
TPR.G31853 Trifolium pratense HOM05D011581 ORTHO05D010515 2.7e-44 183.3 151 70.9
TPR.G15907 Trifolium pratense HOM05D011581 ORTHO05D010515 3.9e-43 179.5 141 73.8
TPR.G36241 Trifolium pratense HOM05D011581 ORTHO05D010515 3.4e-39 166.4 126 77.8
TPR.G8734 Trifolium pratense HOM05D003637 ORTHO05D004175 1.2e-36 157.9 118 71.2
Medtr1g057860 Medicago truncatula HOM05D003637 ORTHO05D004175 1.3e-35 154.5 118 68.6
Ca_14602_v3 Cicer arietinum L. HOM05D003637 ORTHO05D004175 3.3e-34 149.8 118 67.8
Psat6g083160 Pisum sativum HOM05D003637 ORTHO05D004175 1.4e-32 144.4 118 66.9
TPR.G33226 Trifolium pratense HOM05D011581 ORTHO05D010515 3.2e-29 133.3 141 61.0
Lj4g0018134 Lotus japonicus HOM05D003637 ORTHO05D004175 5.4e-29 132.5 116 61.2
Lalb_Chr16g0387641 Lupinus albus HOM05D003637 ORTHO05D004175 3.5e-28 129.8 119 59.7
TPR.G40457 Trifolium pratense HOM05D011581 ORTHO05D010515 3.5e-28 129.8 111 66.7
VMungo0251G0405 Vigna mungo HOM05D003637 ORTHO05D004175 8.6e-27 125.2 122 57.4
Phvul.002G320100 Phaseolus vulgaris HOM05D003637 ORTHO05D004175 1.1e-26 124.8 122 58.2
TPR.G25683 Trifolium pratense HOM05D011581 ORTHO05D002051 4.0e-24 116.3 99 62.6
arahy.Tifrunner.gnm1.ann1.ICJU69 Arachis hypogaea HOM05D003637 ORTHO05D004175 6.9e-24 115.5 115 55.7
arahy.Tifrunner.gnm1.ann1.JT5ZHZ Arachis hypogaea HOM05D003637 ORTHO05D004175 6.9e-24 115.5 115 55.7
TPR.G11677 Trifolium pratense HOM05D011581 ORTHO05D010515 4.4e-23 112.8 90 71.1
TPR.G16819 Trifolium pratense HOM05D008547 ORTHO05D010515 7.6e-23 112.1 124 56.5
arahy.Tifrunner.gnm1.ann1.5D638A Arachis hypogaea HOM05D003637 ORTHO05D004175 9.9e-23 111.7 115 55.7
TPR.G35660 Trifolium pratense HOM05D011581 ORTHO05D413136 2.9e-22 110.2 82 75.6
arahy.Tifrunner.gnm1.ann1.TE3K01 Arachis hypogaea HOM05D003637 ORTHO05D004175 1.4e-21 107.8 115 53.9
Glyma.05G234900 Glycine max HOM05D003637 ORTHO05D004175 6.0e-20 102.4 122 51.6
Glyma.08G042400 Glycine max HOM05D003637 ORTHO05D004175 1.7e-19 100.9 119 50.4
MD10G1004600 Malus domestica HOM05D003637 ORTHO05D004175 2.5e-18 97.1 120 45.0
CANSAT64G0718 Cannabis sativa HOM05D003637 ORTHO05D004175 2.6e-15 87.0 119 44.5
Prupe.8G006900 Prunus persica HOM05D003637 ORTHO05D004175 4.5e-15 86.3 121 41.3
TPR.G486 Trifolium pratense HOM05D011581 ORTHO05D411698 5.8e-15 85.9 65 70.8
CANSAT35G0345 Cannabis sativa HOM05D003637 ORTHO05D004175 1.7e-14 84.3 120 44.2
vmacro18730 Vaccinium macrocarpon HOM05D003637 ORTHO05D004175 3.8e-14 83.2 123 43.1
Cfa004677 Carpinus fangiana HOM05D003637 ORTHO05D004175 6.4e-14 82.4 121 41.3
RcHm_v2.0_Chr6g0251201 Rosa chinensis HOM05D003637 ORTHO05D004175 6.4e-14 82.4 120 40.8
Haze_10275 Corylus avellana HOM05D003637 ORTHO05D004175 1.1e-13 81.6 120 41.7
Cfa008076 Carpinus fangiana HOM05D003637 ORTHO05D004175 1.4e-13 81.3 121 42.1
Potri.019G071400 Populus trichocarpa HOM05D003637 ORTHO05D004175 1.4e-13 81.3 121 41.3
MD05G1003500 Malus domestica HOM05D003637 ORTHO05D004175 3.2e-13 80.1 121 40.5
FAN20G2805 Fragaria x ananassa HOM05D003637 ORTHO05D004175 4.2e-13 79.7 123 39.0
Haze_13959 Corylus avellana HOM05D003637 ORTHO05D004175 5.4e-13 79.3 124 41.1
FvH4_2g00780 Fragaria vesca HOM05D003637 ORTHO05D004175 5.4e-13 79.3 124 38.7
FAN24G0737 Fragaria x ananassa HOM05D003637 ORTHO05D004175 5.4e-13 79.3 124 38.7
Manes.02G201900 Manihot esculenta HOM05D003637 ORTHO05D004175 5.4e-13 79.3 121 41.3
Atru.chr13.2499 Acer truncatum HOM05D003637 ORTHO05D004175 7.1e-13 79.0 116 39.7
FAN27G1433 Fragaria x ananassa HOM05D003637 ORTHO05D004175 7.1e-13 79.0 124 38.7
Atru.chr13.2508 Acer truncatum HOM05D003637 ORTHO05D004175 1.6e-12 77.8 116 38.8
Sabra19G0083400 Salix brachista HOM05D003637 ORTHO05D004175 1.6e-12 77.8 120 39.2
GSVIVG01036288001 Vitis vinifera HOM05D003637 ORTHO05D004175 2.1e-12 77.4 119 38.7
CiPaw.03G014200 Carya illinoinensis HOM05D003637 ORTHO05D004175 7.9e-12 75.5 122 37.7
TPR.G35604 Trifolium pratense HOM05D000295 ORTHO05D000188 7.9e-12 75.5 72 63.9
Rhsim08G0251700 Rhododendron simsii HOM05D003637 ORTHO05D004175 1.8e-11 74.3 120 40.8
Eucgr.F02946 Eucalyptus grandis HOM05D003637 ORTHO05D004175 5.1e-11 72.8 117 39.3
Ah.05g170380 Amaranthus hybridus HOM05D003637 ORTHO05D004175 6.7e-11 72.4 122 39.3
TPR.G21316 Trifolium pratense HOM05D011581 ORTHO05D412009 6.7e-11 72.4 41 92.7
Cpa.g.sc1431.2 Carica papaya HOM05D003637 ORTHO05D004175 8.7e-11 72.0 125 39.2
Ciclev10018820m.g Citrus clementina HOM05D003637 ORTHO05D004175 1.1e-10 71.6 116 37.9
TWI39G1182 Tripterygium wilfordii HOM05D003637 ORTHO05D004175 3.3e-10 70.1 118 35.6
Gohir.A08G225700 Gossypium hirsutum HOM05D003637 ORTHO05D004175 5.6e-10 69.3 119 40.3
Eucgr.E00010 Eucalyptus grandis HOM05D003637 ORTHO05D004175 7.4e-10 68.9 121 38.8
THA.LOC104820917 Tarenaya hassleriana HOM05D003637 ORTHO05D004175 9.6e-10 68.6 123 38.2
AUR62038534 Chenopodium quinoa HOM05D003637 ORTHO05D004175 1.3e-09 68.2 120 35.8
Sed0019638 Sechium edule HOM05D003637 ORTHO05D004175 1.3e-09 68.2 118 40.7
QL09p001806 Quercus lobata HOM05D003637 ORTHO05D004175 1.6e-09 67.8 124 36.3
QL11p001805 Quercus lobata HOM05D003637 ORTHO05D004175 1.6e-09 67.8 124 36.3
CSS0048399 Camellia sinensis var. sinensis HOM05D003637 ORTHO05D004175 3.6e-09 66.6 98 39.8
Duzib106G1310 Durio zibethinus HOM05D003637 ORTHO05D004175 3.6e-09 66.6 171 35.1
Gorai.004G262600 Gossypium raimondii HOM05D003637 ORTHO05D004175 3.6e-09 66.6 119 40.3
MELO3C008093.2 Cucumis melo HOM05D003637 ORTHO05D004175 4.8e-09 66.2 121 39.7
AUR62013381 Chenopodium quinoa HOM05D003637 ORTHO05D004175 8.1e-09 65.5 120 34.2
CsaV3_2G033230 Cucumis sativus L. HOM05D003637 ORTHO05D004175 8.1e-09 65.5 118 39.0
Gohir.D08G246100 Gossypium hirsutum HOM05D003637 ORTHO05D004175 8.1e-09 65.5 119 38.7
QL09p050166 Quercus lobata HOM05D003637 ORTHO05D004175 1.4e-08 64.7 125 35.2
ClCG11G008420 Citrullus lanatus HOM05D003637 ORTHO05D004175 2.4e-08 63.9 118 39.0
TAR628G0957 Trochodendron aralioides HOM05D003637 ORTHO05D004175 2.4e-08 63.9 129 34.9
TWI38G2004 Tripterygium wilfordii HOM05D003637 ORTHO05D004175 3.1e-08 63.5 119 35.3
MBI03_g13500_MAGBIO Magnolia biondii HOM05D003637 ORTHO05D004175 5.3e-08 62.8 118 37.3
Medtr2g007510 Medicago truncatula HOM05D065035 ORTHO05D022925 5.3e-08 62.8 114 40.4
Thhalv10020033m.g Eutrema salsugineum HOM05D003637 ORTHO05D004175 6.9e-08 62.4 126 38.1
Aqoxy1G03903 Aquilegia oxysepala HOM05D003637 ORTHO05D004175 9.0e-08 62.0 120 32.5
Carub.0003s0186 Capsella rubella HOM05D003637 ORTHO05D004175 9.0e-08 62.0 121 38.0
SHI17420 Sapria himalayana HOM05D003637 ORTHO05D004175 9.0e-08 62.0 119 35.3
Lj9C543T19 Lonicera japonica HOM05D003637 ORTHO05D004175 1.2e-07 61.6 117 33.3
Duzib177G0609 Durio zibethinus HOM05D003637 ORTHO05D004175 1.5e-07 61.2 171 34.5
Sc25g0003100 Simmondsia chinensis HOM05D003637 ORTHO05D004175 1.5e-07 61.2 123 34.1
PGR042G1411 Punica granatum HOM05D003637 ORTHO05D004175 2.0e-07 60.8 119 35.3
Thecc.05G195900 Theobroma cacao HOM05D003637 ORTHO05D004175 2.0e-07 60.8 171 34.5
Lj8A738T8 Lonicera japonica HOM05D003637 ORTHO05D004175 2.6e-07 60.5 127 33.1
MBI06_g32172_MAGBIO Magnolia biondii HOM05D003637 ORTHO05D004175 2.6e-07 60.5 120 33.3
Aa31LG5G13230 Aethionema arabicum HOM05D003637 ORTHO05D004175 5.8e-07 59.3 119 33.6
Oeu017573.1 Olea europaea HOM05D003637 ORTHO05D004175 5.8e-07 59.3 130 34.6
Migut.E00203 Erythranthe guttata HOM05D003637 ORTHO05D004175 7.6e-07 58.9 128 36.7
Hund26943 Selenicereus undatus HOM05D003637 ORTHO05D004175 1.7e-06 57.8 120 33.3
Oeu019452.1 Olea europaea HOM05D003637 ORTHO05D004175 2.9e-06 57.0 118 37.3
Peaxi162Scf00194g01048 Petunia axillaris HOM05D003637 ORTHO05D004175 2.9e-06 57.0 125 32.8
CARHR076770 Cardamine hirsuta HOM05D003637 ORTHO05D004175 8.4e-06 55.5 123 34.1
ECA238G2554 Erigeron canadensis HOM05D003637 ORTHO05D004175 8.4e-06 55.5 120 31.7


User provided reference genes

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