Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G5442 Trifolium pratense HOM05D002504 ORTHO05D007555 6.4e-227 790.4 402 100.0
Medtr3g078030 Medicago truncatula HOM05D002504 ORTHO05D007555 5.7e-199 697.6 395 88.9
TPR.G1695 Trifolium pratense HOM05D002504 ORTHO05D007555 1.3e-198 696.4 402 88.1
Psat5g114360 Pisum sativum HOM05D002504 ORTHO05D007555 2.3e-192 675.6 401 84.3
Ca_16191_v3 Cicer arietinum L. HOM05D002504 ORTHO05D007555 1.2e-180 636.7 400 79.2
Lj4g0008726 Lotus japonicus HOM05D002504 ORTHO05D007555 2.3e-168 595.9 398 76.1
VMungo1215G2696 Vigna mungo HOM05D002504 ORTHO05D007555 4.7e-161 571.6 392 72.4
Glyma.17G097600 Glycine max HOM05D002504 ORTHO05D007555 3.0e-160 568.9 398 73.4
Phvul.003G192200 Phaseolus vulgaris HOM05D002504 ORTHO05D007555 3.7e-158 562.0 392 71.7
Lalb_Chr12g0196751 Lupinus albus HOM05D002504 ORTHO05D007555 2.7e-153 545.8 395 69.4
arahy.Tifrunner.gnm1.ann1.WQI89G Arachis hypogaea HOM05D002504 ORTHO05D007555 1.4e-149 533.5 401 65.8
arahy.Tifrunner.gnm1.ann1.AAW7H5 Arachis hypogaea HOM05D002504 ORTHO05D007555 7.7e-148 527.7 396 65.9
arahy.Tifrunner.gnm1.ann1.A4B6B0 Arachis hypogaea HOM05D002504 ORTHO05D007555 1.3e-147 526.9 392 65.8
arahy.Tifrunner.gnm1.ann1.XHUI7I Arachis hypogaea HOM05D002504 ORTHO05D007555 1.9e-146 523.1 396 65.4
Glyma.05G029300 Glycine max HOM05D002504 ORTHO05D007555 6.1e-145 518.1 395 68.1
Haze_07368 Corylus avellana HOM05D002504 ORTHO05D007555 1.2e-135 487.3 393 61.3
QL10p015753 Quercus lobata HOM05D002504 ORTHO05D007555 1.7e-134 483.4 393 61.1
Cfa018981 Carpinus fangiana HOM05D002504 ORTHO05D007555 3.7e-134 482.3 393 61.1
RcHm_v2.0_Chr7g0180701 Rosa chinensis HOM05D002504 ORTHO05D007555 1.9e-133 479.9 393 59.5
FvH4_5g15370 Fragaria vesca HOM05D002504 ORTHO05D007555 2.4e-133 479.6 393 58.5
FAN08G0998 Fragaria x ananassa HOM05D002504 ORTHO05D007555 4.1e-133 478.8 393 58.8
FAN13G2799 Fragaria x ananassa HOM05D002504 ORTHO05D007555 4.6e-132 475.3 393 58.3
FAN04G1481 Fragaria x ananassa HOM05D002504 ORTHO05D007555 6.0e-132 474.9 393 58.3
FAN18G2091 Fragaria x ananassa HOM05D002504 ORTHO05D007555 1.0e-131 474.2 393 58.0
QL10p005074 Quercus lobata HOM05D002504 ORTHO05D007555 6.6e-131 471.5 393 60.3
Prupe.5G187600 Prunus persica HOM05D002504 ORTHO05D007555 7.3e-130 468.0 393 59.0
Actinidia34980 Actinidia chinensis HOM05D002504 ORTHO05D007555 2.1e-129 466.5 393 59.8
Manes.14G075600 Manihot esculenta HOM05D002504 ORTHO05D007555 3.6e-129 465.7 392 59.9
Duzib068G0930 Durio zibethinus HOM05D002504 ORTHO05D007555 2.3e-128 463.0 390 59.0
Ciclev10020527m.g Citrus clementina HOM05D002504 ORTHO05D007555 1.2e-127 460.7 388 60.3
Cpa.g.sc17.218 Carica papaya HOM05D002504 ORTHO05D007555 5.8e-127 458.4 391 57.0
CiPaw.11G039400 Carya illinoinensis HOM05D002504 ORTHO05D007555 5.8e-127 458.4 377 61.3
TWI38G0829 Tripterygium wilfordii HOM05D002504 ORTHO05D007555 7.5e-127 458.0 392 56.1
COL.COLO4_05456 Corchorus olitorius HOM05D002504 ORTHO05D007555 1.6e-124 450.3 390 56.4
Dinv19925 Davidia involucrata HOM05D002504 ORTHO05D007332 5.1e-123 445.3 393 56.2
Gohir.A11G029531 Gossypium hirsutum HOM05D002504 ORTHO05D007555 2.5e-122 443.0 392 56.9
THA.LOC104808328 Tarenaya hassleriana HOM05D002504 ORTHO05D007555 3.3e-122 442.6 395 55.4
TAR374G0022 Trochodendron aralioides HOM05D002504 ORTHO05D007555 3.3e-122 442.6 393 55.5
CSS0049848 Camellia sinensis var. sinensis HOM05D002504 ORTHO05D007555 4.3e-122 442.2 393 56.5
Gohir.D11G032900 Gossypium hirsutum HOM05D002504 ORTHO05D007555 5.6e-122 441.8 392 56.9
Actinidia19055 Actinidia chinensis HOM05D002504 ORTHO05D007555 7.3e-122 441.4 374 59.1
CSS0041593 Camellia sinensis var. sinensis HOM05D002504 ORTHO05D007555 1.2e-121 440.7 393 56.0
ClCG01G016490 Citrullus lanatus HOM05D002504 ORTHO05D007555 1.2e-121 440.7 393 56.2
Dinv09821 Davidia involucrata HOM05D002504 ORTHO05D007555 2.8e-121 439.5 393 55.7
Gorai.007G035700 Gossypium raimondii HOM05D002504 ORTHO05D007555 3.6e-121 439.1 392 56.6
Potri.015G064300 Populus trichocarpa HOM05D002504 ORTHO05D007555 3.6e-121 439.1 392 55.9
TWI39G0444 Tripterygium wilfordii HOM05D002504 ORTHO05D007555 6.2e-121 438.3 392 55.9
TAR622G0915 Trochodendron aralioides HOM05D002504 ORTHO05D007555 1.8e-120 436.8 393 55.2
CANSAT78G1429 Cannabis sativa HOM05D002504 ORTHO05D007555 3.1e-120 436.0 399 56.4
Thecc.03G080700 Theobroma cacao HOM05D002504 ORTHO05D007555 3.1e-120 436.0 390 56.4
Sed0014360 Sechium edule HOM05D002504 ORTHO05D007555 6.8e-120 434.9 394 55.6
MELO3C007518.2 Cucumis melo HOM05D002504 ORTHO05D007555 2.6e-119 433.0 393 54.7
MD14G1195800 Malus domestica HOM05D002504 ORTHO05D007555 2.6e-119 433.0 395 55.9
Rhsim12G0158700 Rhododendron simsii HOM05D002504 ORTHO05D007555 7.6e-119 431.4 393 55.2
CsaV3_6G042770 Cucumis sativus L. HOM05D002504 ORTHO05D007555 4.9e-118 428.7 390 54.9
Sabra15G0090100 Salix brachista HOM05D002504 ORTHO05D007555 2.4e-117 426.4 392 55.1
Atru.BG.192.p Acer truncatum HOM05D002504 ORTHO05D007555 2.1e-116 423.3 348 60.3
Oeu022629.1 Olea europaea HOM05D002504 ORTHO05D007555 2.3e-115 419.9 393 52.7
Cc04_g15430 Coffea canephora HOM05D002504 ORTHO05D007555 3.0e-115 419.5 392 52.8
AT1G18850 Arabidopsis thaliana HOM05D002504 ORTHO05D007555 5.2e-112 408.7 400 51.8
Nn3g16999 Nelumbo nucifera HOM05D002504 ORTHO05D007555 2.0e-111 406.8 389 53.0
AL1G31390 Arabidopsis lyrata HOM05D002504 ORTHO05D007555 1.7e-110 403.7 399 51.9
CARHR019500 Cardamine hirsuta HOM05D002504 ORTHO05D007555 8.4e-110 401.4 397 50.9
Eucgr.A00822 Eucalyptus grandis HOM05D002504 ORTHO05D007555 5.4e-109 398.7 379 52.5
Carub.0001s1850 Capsella rubella HOM05D002504 ORTHO05D007555 1.6e-108 397.1 412 49.3
SalBow5G4081 Salvia bowleyana HOM05D002504 ORTHO05D007555 1.6e-108 397.1 393 50.6
A06p15070 Brassica napus HOM05D002504 ORTHO05D007555 3.0e-107 392.9 391 49.1
Thhalv10007868m.g Eutrema salsugineum HOM05D002504 ORTHO05D007555 3.9e-107 392.5 395 50.1
BraA06t24622Z Brassica rapa HOM05D002504 ORTHO05D007555 1.9e-106 390.2 391 48.3
Aqoxy3G03288 Aquilegia oxysepala HOM05D002504 ORTHO05D007555 2.5e-106 389.8 396 51.8
Aa31LG7G3620 Aethionema arabicum HOM05D002504 ORTHO05D007555 7.3e-106 388.3 395 50.4
Sp1g16830 Schrenkiella parvula HOM05D002504 ORTHO05D007555 7.3e-106 388.3 423 47.3
PGR083G1477 Punica granatum HOM05D002504 ORTHO05D007555 9.6e-106 387.9 389 50.4
SHI03355 Sapria himalayana HOM05D002504 ORTHO05D007555 6.2e-105 385.2 397 48.1
Nitab4.5_0000269g0140 Nicotiana tabacum HOM05D002504 ORTHO05D007555 2.4e-104 383.3 395 48.1
PGSC0003DMG400033071 Solanum tuberosum HOM05D002504 ORTHO05D007555 1.2e-103 380.9 395 47.3
C05p17270 Brassica napus HOM05D002504 ORTHO05D007555 2.0e-103 380.2 422 45.7
BolC5t30427H Brassica oleracea HOM05D002504 ORTHO05D007555 2.0e-103 380.2 422 45.7
MSTRG.4344 Avicennia marina HOM05D002504 ORTHO05D007555 2.6e-103 379.8 392 48.5
Sopen06g027310 Solanum pennellii HOM05D002504 ORTHO05D007555 7.6e-103 378.3 390 46.7
Solyc06g071010.4 Solanum lycopersicum HOM05D002504 ORTHO05D007555 1.7e-102 377.1 390 46.9
Nitab4.5_0007394g0010 Nicotiana tabacum HOM05D002504 ORTHO05D007555 3.8e-102 375.9 395 46.8
BcaC05g25787 Brassica carinata HOM05D002504 ORTHO05D007555 1.9e-101 373.6 418 45.0
Peaxi162Scf00013g00007 Petunia axillaris HOM05D002504 ORTHO05D007555 1.6e-100 370.5 394 48.7
Sc10g0009970 Simmondsia chinensis HOM05D002504 ORTHO05D007555 3.0e-99 366.3 393 47.6
DCAR_001955 Daucus carota HOM05D002504 ORTHO05D007555 5.6e-98 362.1 395 49.4
BcaB07g31903 Brassica carinata HOM05D002504 ORTHO05D007555 7.4e-98 361.7 420 44.0
CAN.G628.37 Capsicum annuum HOM05D002504 ORTHO05D007555 7.4e-98 361.7 392 46.9
MBI03_g18947_MAGBIO Magnolia biondii HOM05D002504 ORTHO05D007555 1.3e-97 360.9 393 48.3
PSO591G0510 Papaver somniferum HOM05D002504 ORTHO05D007555 3.6e-97 359.4 399 47.9
Lsat_1_v5_gn_1_10961 Lactuca sativa HOM05D002504 ORTHO05D007555 4.8e-97 359.0 398 46.7
AUR62038455 Chenopodium quinoa HOM05D002504 ORTHO05D007555 1.1e-96 357.8 400 46.0
PSO832G2768 Papaver somniferum HOM05D002504 ORTHO05D007555 9.0e-96 354.8 399 47.1
AUR62042153 Chenopodium quinoa HOM05D002504 ORTHO05D007555 1.2e-95 354.4 400 45.8
DCAR_001117 Daucus carota HOM05D002504 ORTHO05D007555 4.5e-95 352.4 391 48.6
Ah.02g112510 Amaranthus hybridus HOM05D002504 ORTHO05D007555 1.7e-94 350.5 397 47.4
Migut.I00134 Erythranthe guttata HOM05D002504 ORTHO05D007555 9.3e-93 344.7 398 46.7
EL10As5g23568 Beta vulgaris HOM05D002504 ORTHO05D007555 2.3e-91 340.1 398 45.2
HPP92_004873 Vanilla planifolia HOM05D002504 ORTHO05D007555 3.3e-90 336.3 380 46.6
PSO063G6525 Papaver somniferum HOM05D002504 ORTHO05D007555 1.5e-87 327.4 394 44.9
MBI11_g21312_MAGBIO Magnolia biondii HOM05D002504 ORTHO05D007555 5.8e-87 325.5 392 45.7
unitig_52.g17495 Utricularia gibba HOM05D002504 ORTHO05D007555 1.0e-86 324.7 394 42.9
HanXRQChr06g0178031 Helianthus annuus HOM05D002504 ORTHO05D007555 2.2e-86 323.6 380 45.5
MBI03_g28522_MAGBIO Magnolia biondii HOM05D002504 ORTHO05D007555 7.1e-85 318.5 392 44.1
GSVIVG01008049001 Vitis vinifera HOM05D002504 ORTHO05D007555 2.1e-84 317.0 347 48.1
Lj5P114T15 Lonicera japonica HOM05D002504 ORTHO05D007555 6.0e-84 315.5 263 57.0
Nn5g27262 Nelumbo nucifera HOM05D002504 ORTHO05D007555 6.7e-83 312.0 268 57.1
Lj7P436T44 Lonicera japonica HOM05D002504 ORTHO05D007555 9.6e-82 308.1 310 50.0
CDE07G0237 Ceratophyllum demersum HOM05D002504 ORTHO05D007555 9.0e-80 301.6 371 43.4
SGA_v2.0_scaffold56G20046 Striga asiatica HOM05D002504 ORTHO05D007555 2.6e-79 300.1 334 46.1
ECA236G0190 Erigeron canadensis HOM05D002504 ORTHO05D007332 8.5e-70 268.5 294 45.6
ATR1120G016 Amborella trichopoda HOM05D002504 ORTHO05D007555 2.0e-63 247.3 424 38.9
Dinv02434 Davidia involucrata HOM05D002504 ORTHO05D007555 2.7e-60 236.9 179 63.7
Os01g0112100 Oryza sativa ssp. japonica HOM05D002504 ORTHO05D007555 6.1e-44 182.6 245 39.6
Zm00001eb126250 Zea mays HOM05D002504 ORTHO05D007555 2.4e-40 170.6 370 31.4
Zm00001eb334590 Zea mays HOM05D002504 ORTHO05D007555 3.5e-39 166.8 360 30.8
SEGI_18201 Sequoiadendron giganteum HOM05D002504 ORTHO05D007555 2.6e-34 150.6 401 27.7
Duzib205G0461 Durio zibethinus HOM05D002504 ORTHO05D007555 4.4e-34 149.8 312 34.9
BcaB07g32205 Brassica carinata HOM05D002504 ORTHO05D007555 1.4e-27 128.3 391 28.9
Aa31LG9G8990 Aethionema arabicum HOM05D000710 ORTHO05D000336 2.3e-27 127.5 247 33.6
arahy.Tifrunner.gnm1.ann1.8LRZ9F Arachis hypogaea HOM05D002504 ORTHO05D007555 7.5e-26 122.5 254 33.1
Pp3c1_3820 Physcomitrium patens HOM05D002504 ORTHO05D007555 8.3e-25 119.0 458 23.4
Pp3c1_3850 Physcomitrium patens HOM05D002504 ORTHO05D007555 8.3e-25 119.0 458 23.4
Ciclev10033409m.g Citrus clementina HOM05D002504 ORTHO05D007555 5.4e-24 116.3 181 42.0
AagrBONN_evm.TU.Sc2ySwM_369.370 Anthoceros agrestis HOM05D002504 ORTHO05D007555 3.9e-22 110.2 354 26.6
Mapoly0028s0021 Marchantia polymorpha HOM05D002504 ORTHO05D007555 3.9e-22 110.2 356 24.4
Nn5g27265 Nelumbo nucifera HOM05D002504 ORTHO05D007555 3.3e-21 107.1 383 27.7
Sabra12G0030300 Salix brachista HOM05D002504 ORTHO05D007555 1.6e-20 104.8 173 40.5
SMO367G0630 Selaginella moellendorffii HOM05D002504 ORTHO05D007555 1.2e-12 78.6 261 23.0
CBR_g26261 Chara braunii HOM05D002504 ORTHO05D007555 3.5e-07 60.5 274 22.6


User provided reference genes

Program Settings