Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G5437 Trifolium pratense HOM05D004893 ORTHO05D006320 0.0e+00 1607.0 800 100.0
Psat4g012800 Pisum sativum HOM05D004893 ORTHO05D006320 0.0e+00 1428.7 800 87.8
Ca_21236_v3 Cicer arietinum L. HOM05D004893 ORTHO05D006320 0.0e+00 1419.8 800 87.5
Medtr4g127820 Medicago truncatula HOM05D004893 ORTHO05D006320 0.0e+00 1379.0 800 85.6
Lj4g0004814 Lotus japonicus HOM05D004893 ORTHO05D006320 0.0e+00 1273.1 803 78.6
Lalb_Chr07g0180551 Lupinus albus HOM05D004893 ORTHO05D006320 0.0e+00 1198.7 804 74.0
arahy.Tifrunner.gnm1.ann1.B5GTII Arachis hypogaea HOM05D004893 ORTHO05D006320 0.0e+00 1176.0 803 73.7
VMungo1215G1808 Vigna mungo HOM05D004893 ORTHO05D006320 0.0e+00 1175.6 804 72.3
arahy.Tifrunner.gnm1.ann1.48BVGN Arachis hypogaea HOM05D004893 ORTHO05D006320 0.0e+00 1148.3 807 72.1
Phvul.003G144100 Phaseolus vulgaris HOM05D004893 ORTHO05D006320 0.0e+00 1141.7 800 71.4
Glyma.13G097400 Glycine max HOM05D004893 ORTHO05D006320 0.0e+00 1131.3 806 72.3
Glyma.17G062200 Glycine max HOM05D004893 ORTHO05D006320 0.0e+00 1114.4 807 71.5
QL02p098221 Quercus lobata HOM05D004893 ORTHO05D006320 8.4e-303 1043.5 810 64.7
Cfa010313 Carpinus fangiana HOM05D004893 ORTHO05D006320 2.8e-298 1028.5 809 63.5
Cfa013310 Carpinus fangiana HOM05D004893 ORTHO05D006320 5.2e-297 1024.2 809 63.4
Prupe.1G084200 Prunus persica HOM05D004893 ORTHO05D006320 1.7e-292 1009.2 812 62.6
RcHm_v2.0_Chr4g0401591 Rosa chinensis HOM05D004893 ORTHO05D006320 1.6e-290 1002.7 808 61.9
TAR627G1078 Trochodendron aralioides HOM05D004893 ORTHO05D006320 2.8e-290 1001.9 809 62.7
Potri.006G166500 Populus trichocarpa HOM05D004893 ORTHO05D006320 2.0e-288 995.7 813 62.2
Gohir.A05G004264 Gossypium hirsutum HOM05D004893 ORTHO05D006320 2.6e-288 995.3 813 61.7
Atru.chr7.881 Acer truncatum HOM05D004893 ORTHO05D006320 7.6e-288 993.8 820 61.6
Gohir.D05G004900 Gossypium hirsutum HOM05D004893 ORTHO05D006320 7.6e-288 993.8 813 61.5
Gorai.009G004800 Gossypium raimondii HOM05D004893 ORTHO05D006320 7.6e-288 993.8 813 61.5
Duzib150G0781 Durio zibethinus HOM05D004893 ORTHO05D006320 2.9e-287 991.9 808 61.6
MD13G1251600 Malus domestica HOM05D004893 ORTHO05D006320 6.4e-287 990.7 808 60.4
Thecc.09G175700 Theobroma cacao HOM05D004893 ORTHO05D006320 1.0e-284 983.4 813 61.0
Ciclev10007405m.g Citrus clementina HOM05D004893 ORTHO05D006320 3.0e-284 981.9 821 61.0
FAN12G2097 Fragaria x ananassa HOM05D004893 ORTHO05D006320 6.7e-284 980.7 804 61.6
FAN22G1078 Fragaria x ananassa HOM05D004893 ORTHO05D006320 2.5e-283 978.8 804 61.2
FvH4_4g07920 Fragaria vesca HOM05D004893 ORTHO05D006320 9.6e-283 976.9 805 61.4
Manes.06G023100 Manihot esculenta HOM05D004893 ORTHO05D006320 9.6e-283 976.9 816 60.8
GSVIVG01030738001 Vitis vinifera HOM05D004893 ORTHO05D006320 9.0e-281 970.3 814 60.2
Potri.018G091100 Populus trichocarpa HOM05D004893 ORTHO05D006320 2.0e-280 969.1 813 60.9
Hma1.2p1_0321F.1_g124570 Hydrangea macrophylla HOM05D004893 ORTHO05D006320 5.8e-280 967.6 815 59.9
Sed0012855 Sechium edule HOM05D004893 ORTHO05D006320 8.4e-279 963.8 812 59.4
ClCG06G013450 Citrullus lanatus HOM05D004893 ORTHO05D006320 2.4e-278 962.2 811 60.7
Haze_03433 Corylus avellana HOM05D004893 ORTHO05D006320 4.2e-278 961.4 815 60.7
FAN07G0898 Fragaria x ananassa HOM05D004893 ORTHO05D006320 5.5e-278 961.1 806 60.5
CsaV3_1G031710 Cucumis sativus L. HOM05D004893 ORTHO05D006320 1.8e-276 956.1 810 59.9
Sed0012025 Sechium edule HOM05D004893 ORTHO05D006320 1.5e-275 953.0 810 59.3
Sabra06G0128100 Salix brachista HOM05D004893 ORTHO05D006320 7.4e-275 950.7 875 57.0
TWI34G0813 Tripterygium wilfordii HOM05D004893 ORTHO05D006320 1.1e-273 946.8 816 58.8
PGR044G2140 Punica granatum HOM05D004893 ORTHO05D006320 3.1e-273 945.3 814 59.3
Eucgr.C02353 Eucalyptus grandis HOM05D004893 ORTHO05D006320 6.9e-273 944.1 811 58.9
Atru.chr13.1778 Acer truncatum HOM05D004893 ORTHO05D006320 9.0e-273 943.7 784 61.4
FAN17G0276 Fragaria x ananassa HOM05D004893 ORTHO05D006320 3.4e-272 941.8 868 56.5
Nn7g38118 Nelumbo nucifera HOM05D004893 ORTHO05D006320 1.6e-269 932.9 810 58.1
MELO3C017452.2 Cucumis melo HOM05D004893 ORTHO05D006320 2.3e-268 929.1 810 59.4
CSS0008978 Camellia sinensis var. sinensis HOM05D004893 ORTHO05D006320 5.7e-267 924.5 817 58.1
CSS0040034 Camellia sinensis var. sinensis HOM05D004893 ORTHO05D006320 5.7e-267 924.5 817 58.1
CANSAT11G1129 Cannabis sativa HOM05D004893 ORTHO05D006320 5.7e-267 924.5 811 57.1
EL10Ac6g14738 Beta vulgaris HOM05D004893 ORTHO05D006320 7.6e-264 914.1 805 57.1
COL.COLO4_37741 Corchorus olitorius HOM05D004893 ORTHO05D006320 5.0e-263 911.4 835 57.5
Aqoxy3G03036 Aquilegia oxysepala HOM05D004893 ORTHO05D006320 2.5e-259 899.0 816 57.0
DCAR_013745 Daucus carota HOM05D004893 ORTHO05D006320 3.3e-259 898.7 805 56.3
Ah.09g231700 Amaranthus hybridus HOM05D004893 ORTHO05D006320 7.4e-259 897.5 808 56.4
SalBow8G3700 Salvia bowleyana HOM05D004893 ORTHO05D006320 1.3e-258 896.7 809 56.5
Peaxi162Scf00452g00844 Petunia axillaris HOM05D004893 ORTHO05D006320 1.8e-257 892.9 809 55.9
AT2G18900 Arabidopsis thaliana HOM05D004893 ORTHO05D006320 6.9e-257 891.0 816 56.0
THA.LOC104803489 Tarenaya hassleriana HOM05D004893 ORTHO05D006320 6.9e-257 891.0 814 55.8
Cc05_g16000 Coffea canephora HOM05D004893 ORTHO05D006320 4.5e-256 888.3 814 56.3
Sp3g32370 Schrenkiella parvula HOM05D004893 ORTHO05D006320 1.0e-255 887.1 816 55.9
AL3G53020 Arabidopsis lyrata HOM05D004893 ORTHO05D006320 1.3e-255 886.7 817 56.2
ECA240G4652 Erigeron canadensis HOM05D004893 ORTHO05D006320 3.8e-255 885.2 807 55.9
C07p03690 Brassica napus HOM05D004893 ORTHO05D006320 6.5e-255 884.4 815 55.8
Thhalv10022562m.g Eutrema salsugineum HOM05D004893 ORTHO05D006320 6.5e-255 884.4 814 55.8
BcaC06g36488 Brassica carinata HOM05D004893 ORTHO05D006320 1.4e-254 883.2 815 55.8
Carub.0003s3314 Capsella rubella HOM05D004893 ORTHO05D006320 1.4e-254 883.2 818 55.9
BolC7t40765H Brassica oleracea HOM05D004893 ORTHO05D006320 2.5e-254 882.5 815 55.7
Rhsim13G0225800 Rhododendron simsii HOM05D004893 ORTHO05D006320 2.5e-254 882.5 852 54.5
A07p01760 Brassica napus HOM05D004893 ORTHO05D006320 4.2e-254 881.7 815 55.8
BraA07t27976Z Brassica rapa HOM05D004893 ORTHO05D006320 2.7e-253 879.0 823 55.5
Solyc07g066410.4 Solanum lycopersicum HOM05D004893 ORTHO05D006320 2.7e-253 879.0 809 56.5
HanXRQChr09g0273501 Helianthus annuus HOM05D004893 ORTHO05D006320 4.7e-253 878.2 806 55.3
Sopen07g034580 Solanum pennellii HOM05D004893 ORTHO05D006320 7.9e-253 877.5 812 56.8
vmacro21776 Vaccinium macrocarpon HOM05D004893 ORTHO05D006320 2.3e-252 875.9 815 55.1
CARHR109460 Cardamine hirsuta HOM05D004893 ORTHO05D006320 9.7e-251 870.5 821 55.1
PSO063G4841 Papaver somniferum HOM05D004893 ORTHO05D006320 5.3e-249 864.8 811 56.2
Nitab4.5_0008437g0020 Nicotiana tabacum HOM05D004893 ORTHO05D006320 9.1e-249 864.0 817 56.1
MSTRG.16114 Avicennia marina HOM05D004893 ORTHO05D006320 5.9e-248 861.3 811 54.0
PSO782G3725 Papaver somniferum HOM05D004893 ORTHO05D006320 4.2e-246 855.1 811 55.5
Aa31LG8G15990 Aethionema arabicum HOM05D004893 ORTHO05D006320 9.7e-243 844.0 822 53.9
Lj8C187G7 Lonicera japonica HOM05D004893 ORTHO05D006320 1.2e-240 837.0 838 54.8
CDE08G1653 Ceratophyllum demersum HOM05D004893 ORTHO05D006320 8.5e-239 830.9 806 53.8
Lsat_1_v5_gn_7_72221 Lactuca sativa HOM05D004893 ORTHO05D006320 4.2e-238 828.6 822 54.4
ATR1098G135 Amborella trichopoda HOM05D004893 ORTHO05D006320 7.2e-230 801.2 816 52.0
BcaB03g16682 Brassica carinata HOM05D004893 ORTHO05D006320 7.2e-230 801.2 815 52.4
AUR62042215 Chenopodium quinoa HOM05D004893 ORTHO05D006320 4.8e-226 788.5 807 50.2
HPP92_012201 Vanilla planifolia HOM05D004893 ORTHO05D006320 5.0e-223 778.5 804 50.2
CiPaw.08G035400 Carya illinoinensis HOM05D004893 ORTHO05D006320 8.9e-220 767.7 579 65.5
Nitab4.5_0001749g0080 Nicotiana tabacum HOM05D004893 ORTHO05D006320 2.0e-219 766.5 825 51.4
Zm00001eb031520 Zea mays HOM05D004893 ORTHO05D006320 2.2e-218 763.1 804 49.3
Hund06466 Selenicereus undatus HOM05D004893 ORTHO05D006320 7.8e-216 754.6 743 54.1
Os12g0609800 Oryza sativa ssp. japonica HOM05D004893 ORTHO05D006320 2.3e-215 753.1 802 48.6
AUR62033061 Chenopodium quinoa HOM05D004893 ORTHO05D006320 2.5e-214 749.6 812 48.3
Migut.M01562 Erythranthe guttata HOM05D004893 ORTHO05D006320 4.3e-214 748.8 811 49.4
Sc12g0007760 Simmondsia chinensis HOM05D004893 ORTHO05D006320 4.9e-210 735.3 622 56.9
unitig_748.g7834 Utricularia gibba HOM05D004893 ORTHO05D006320 1.1e-196 691.0 805 45.2
SGA_v2.0_scaffold186G40224 Striga asiatica HOM05D004893 ORTHO05D006320 1.2e-195 687.6 882 45.5
Actinidia07346 Actinidia chinensis HOM05D004893 ORTHO05D006320 3.4e-187 659.4 534 61.2
SEGI_38878 Sequoiadendron giganteum HOM05D004893 ORTHO05D006320 1.2e-179 634.4 819 41.6
AT3G26480 Arabidopsis thaliana HOM05D004893 ORTHO05D006320 7.6e-171 605.1 814 42.9
AL7G19230 Arabidopsis lyrata HOM05D004893 ORTHO05D006320 7.9e-168 595.1 815 42.8
Thhalv10024453m.g Eutrema salsugineum HOM05D004893 ORTHO05D006320 4.6e-160 569.3 845 40.5
C01p06460 Brassica napus HOM05D004893 ORTHO05D006320 1.6e-152 544.3 811 41.1
Mapoly0156s0021 Marchantia polymorpha HOM05D004893 ORTHO05D006320 2.3e-151 540.4 847 38.4
Dinv42517 Davidia involucrata HOM05D004893 ORTHO05D006320 4.5e-147 526.2 462 57.8
MD16G1255900 Malus domestica HOM05D004893 ORTHO05D006320 7.9e-144 515.4 578 47.9
AagrBONN_evm.TU.Sc2ySwM_228.3065 Anthoceros agrestis HOM05D004893 ORTHO05D006320 2.0e-139 500.7 825 38.1
BolC1t00640H Brassica oleracea HOM05D004893 ORTHO05D006320 2.1e-136 490.7 798 39.2
Carub.0007s0802 Capsella rubella HOM05D004893 ORTHO05D006320 1.5e-134 484.6 676 42.0
Pp3c7_4120 Physcomitrium patens HOM05D004893 ORTHO05D006320 1.1e-132 478.4 847 35.4
MBI02_g12652_MAGBIO Magnolia biondii HOM05D004893 ORTHO05D006320 3.1e-132 476.9 478 54.6
BcaB07g31639 Brassica carinata HOM05D004893 ORTHO05D006320 1.8e-124 451.1 813 38.1
SMO356G0292 Selaginella moellendorffii HOM05D004893 ORTHO05D006320 2.0e-123 447.6 846 35.1
BcaC09g52044 Brassica carinata HOM05D004893 ORTHO05D006320 1.2e-112 411.8 815 35.8
Cpa.g.sc523.1 Carica papaya HOM05D004893 ORTHO05D006320 6.3e-109 399.4 337 59.1
CBR_g49376 Chara braunii HOM05D004893 ORTHO05D006320 1.0e-95 355.5 679 32.3
Oeu016137.1 Olea europaea HOM05D004893 ORTHO05D001543 1.4e-92 345.1 391 49.4
CARHR240500 Cardamine hirsuta HOM05D004893 ORTHO05D006320 1.9e-73 281.6 408 40.2
Cre04.g215350 Chlamydomonas reinhardtii HOM05D004893 ORTHO05D006320 4.8e-64 250.4 742 28.3
BcaC04g22880 Brassica carinata HOM05D004893 ORTHO05D006320 2.9e-61 241.1 272 50.7
BolC9t54332H Brassica oleracea HOM05D004893 ORTHO05D006320 3.8e-61 240.7 273 50.9
C09p14300 Brassica napus HOM05D004893 ORTHO05D006320 7.1e-60 236.5 273 50.2
RcHm_v2.0_Chr4g0401681 Rosa chinensis HOM05D004893 ORTHO05D006320 3.0e-58 231.1 156 71.2
Dinv42518 Davidia involucrata HOM05D004893 ORTHO05D006320 3.5e-51 207.6 196 55.1
CANSAT11G1181 Cannabis sativa HOM05D004893 ORTHO05D006320 9.0e-47 193.0 198 50.5
PRCOL_00005731 Prasinoderma coloniale HOM05D004893 ORTHO05D006320 1.7e-37 162.2 781 22.9
MCO01G002 Micromonas commoda HOM05D004893 ORTHO05D006320 3.9e-34 151.0 435 29.4
MBI02_g33733_MAGBIO Magnolia biondii HOM05D004893 ORTHO05D006320 6.7e-34 150.2 147 54.4
RcHm_v2.0_Chr4g0401691 Rosa chinensis HOM05D004893 ORTHO05D006320 8.7e-34 149.8 137 56.9
Cpa.g.sc95.47 Carica papaya HOM05D004893 ORTHO05D006320 9.0e-31 139.8 133 53.4
SHI02896 Sapria himalayana HOM05D004893 ORTHO05D006320 3.0e-26 124.8 120 53.3
Glyma.11G074200 Glycine max HOM05D004893 ORTHO05D006320 4.5e-22 110.9 89 66.3
BraA09t36855Z Brassica rapa HOM05D004893 ORTHO05D006320 2.2e-16 92.0 110 48.2
A09p12110 Brassica napus HOM05D004893 ORTHO05D006320 1.4e-15 89.4 110 47.3
EL10Ac6g14737 Beta vulgaris HOM05D004893 ORTHO05D006320 2.9e-13 81.6 63 66.7
MBI12_g20565_MAGBIO Magnolia biondii HOM05D004893 ORTHO05D006320 2.9e-13 81.6 71 59.2
arahy.Tifrunner.gnm1.ann1.09RZEI Arachis hypogaea HOM05D004893 ORTHO05D006320 1.5e-12 79.3 46 76.1
Cfa026329 Carpinus fangiana HOM05D004893 ORTHO05D006320 1.9e-12 79.0 97 41.2
arahy.Tifrunner.gnm1.ann1.BHNU0I Arachis hypogaea HOM05D004893 ORTHO05D006320 2.5e-12 78.6 46 76.1
BolC9t54333H Brassica oleracea HOM05D004893 ORTHO05D006320 2.7e-11 75.1 59 57.6
arahy.Tifrunner.gnm1.ann1.F8045A Arachis hypogaea HOM05D062897 ORTHO05D023720 9.7e-09 66.6 44 75.0
Lsat_1_v5_gn_5_51440 Lactuca sativa HOM05D004893 ORTHO05D048382 9.7e-09 66.6 96 40.6
CARHR240490 Cardamine hirsuta HOM05D004893 ORTHO05D006320 1.7e-08 65.9 79 43.0
arahy.Tifrunner.gnm1.ann1.NVD3GI Arachis hypogaea HOM05D001215 ORTHO05D001387 1.4e-07 62.8 62 54.8


User provided reference genes

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