Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G5406 Trifolium pratense HOM05D002729 ORTHO05D003163 8.7e-160 567.0 305 100.0
TPR.G16696 Trifolium pratense HOM05D002729 ORTHO05D003163 2.6e-26 123.6 172 51.7
arahy.Tifrunner.gnm1.ann1.24ZDA8 Arachis hypogaea HOM05D002729 ORTHO05D003163 3.5e-23 113.2 174 47.7
arahy.Tifrunner.gnm1.ann1.AX1616 Arachis hypogaea HOM05D002729 ORTHO05D003163 3.5e-23 113.2 174 47.7
Lalb_Chr18g0048741 Lupinus albus HOM05D002729 ORTHO05D003163 9.4e-21 105.1 175 44.0
Lj3g0011769 Lotus japonicus HOM05D002729 ORTHO05D003163 1.6e-20 104.4 171 52.6
Ca_14122_v3 Cicer arietinum L. HOM05D002729 ORTHO05D003163 4.7e-20 102.8 176 44.9
Psat5g231000 Pisum sativum HOM05D002729 ORTHO05D003163 4.7e-20 102.8 176 50.0
Actinidia38844 Actinidia chinensis HOM05D002729 ORTHO05D003163 8.0e-20 102.1 183 41.5
COL.COLO4_38062 Corchorus olitorius HOM05D002729 ORTHO05D003163 2.3e-19 100.5 186 46.8
CiPaw.05G096200 Carya illinoinensis HOM05D002729 ORTHO05D003163 2.6e-18 97.1 175 42.3
QL11p057171 Quercus lobata HOM05D002729 ORTHO05D003163 2.2e-17 94.0 176 43.2
unitig_22.g6117 Utricularia gibba HOM05D002729 ORTHO05D003163 2.8e-17 93.6 175 40.6
ATR0796G047 Amborella trichopoda HOM05D002729 ORTHO05D003163 3.7e-17 93.2 175 38.3
Medtr3g009280 Medicago truncatula HOM05D002729 ORTHO05D003163 4.8e-17 92.8 145 46.2
QL11p057597 Quercus lobata HOM05D002729 ORTHO05D003163 4.8e-17 92.8 176 42.6
Pp3c8_5610 Physcomitrium patens HOM05D002729 ORTHO05D003163 1.4e-16 91.3 125 44.8
Pp3c8_5700 Physcomitrium patens HOM05D002729 ORTHO05D003163 1.4e-16 91.3 125 44.8
Pp3c8_5730 Physcomitrium patens HOM05D002729 ORTHO05D003163 1.4e-16 91.3 125 44.8
Manes.15G112200 Manihot esculenta HOM05D002729 ORTHO05D003163 2.4e-16 90.5 134 46.3
Lalb_Chr15g0079821 Lupinus albus HOM05D002729 ORTHO05D003163 3.1e-16 90.1 176 42.6
Nn3g16166 Nelumbo nucifera HOM05D002729 ORTHO05D003163 3.1e-16 90.1 172 40.7
MSTRG.5230 Avicennia marina HOM05D002729 ORTHO05D003163 4.1e-16 89.7 120 48.3
Lalb_Chr15g0079841 Lupinus albus HOM05D002729 ORTHO05D003163 5.3e-16 89.4 201 40.3
Actinidia26322 Actinidia chinensis HOM05D002729 ORTHO05D003163 7.0e-16 89.0 177 39.5
HPP92_003448 Vanilla planifolia HOM05D002729 ORTHO05D003163 7.0e-16 89.0 174 37.9
VMungo1080G1192 Vigna mungo HOM05D002729 ORTHO05D003163 7.0e-16 89.0 147 44.2
CiPaw.06G112500 Carya illinoinensis HOM05D002729 ORTHO05D003163 1.6e-15 87.8 177 39.0
Glyma.04G116500 Glycine max HOM05D002729 ORTHO05D003163 2.7e-15 87.0 139 43.9
Sc18g0004140 Simmondsia chinensis HOM05D002729 ORTHO05D003163 2.7e-15 87.0 185 41.1
HPP92_028337 Vanilla planifolia HOM05D002729 ORTHO05D003163 1.0e-14 85.1 160 38.8
EL10Ac8g20265 Beta vulgaris HOM05D002729 ORTHO05D003163 1.3e-14 84.7 179 40.2
PGR142G1892 Punica granatum HOM05D002729 ORTHO05D003163 1.7e-14 84.3 158 43.0
Phvul.005G006400 Phaseolus vulgaris HOM05D002729 ORTHO05D003163 2.2e-14 84.0 136 44.9
Haze_02479 Corylus avellana HOM05D002729 ORTHO05D003163 8.5e-14 82.0 201 37.3
AUR62021812 Chenopodium quinoa HOM05D002729 ORTHO05D003163 1.1e-13 81.6 157 40.8
Eucgr.I01557 Eucalyptus grandis HOM05D002729 ORTHO05D003163 1.1e-13 81.6 176 37.5
ClCG02G003120 Citrullus lanatus HOM05D002729 ORTHO05D003163 2.5e-13 80.5 118 44.1
Solyc10g024330.3 Solanum lycopersicum HOM05D002729 ORTHO05D003163 2.5e-13 80.5 115 46.1
MELO3C024173.2 Cucumis melo HOM05D002729 ORTHO05D003163 3.2e-13 80.1 118 44.1
CsaV3_7G002290 Cucumis sativus L. HOM05D002729 ORTHO05D003163 3.2e-13 80.1 118 44.1
Eucgr.H01461 Eucalyptus grandis HOM05D002729 ORTHO05D003163 3.2e-13 80.1 123 43.1
THA.LOC104807416 Tarenaya hassleriana HOM05D002729 ORTHO05D003163 7.2e-13 79.0 173 38.7
Gohir.A03G168800 Gossypium hirsutum HOM05D002729 ORTHO05D003163 1.2e-12 78.2 122 46.7
PSO017G4879 Papaver somniferum HOM05D002729 ORTHO05D003163 1.2e-12 78.2 174 39.7
PSO478G5186 Papaver somniferum HOM05D002729 ORTHO05D003163 1.2e-12 78.2 175 41.1
SalBow6G2707 Salvia bowleyana HOM05D002729 ORTHO05D003163 1.2e-12 78.2 123 45.5
Glyma.06G320200 Glycine max HOM05D002729 ORTHO05D003163 1.6e-12 77.8 142 43.0
Hund04402 Selenicereus undatus HOM05D002729 ORTHO05D003163 1.6e-12 77.8 133 43.6
TAR623G1398 Trochodendron aralioides HOM05D002729 ORTHO05D003163 1.6e-12 77.8 177 37.3
AagrBONN_evm.TU.Sc2ySwM_344.2824 Anthoceros agrestis HOM05D002729 ORTHO05D003163 2.1e-12 77.4 126 40.5
AL7G15720 Arabidopsis lyrata HOM05D002729 ORTHO05D003163 2.1e-12 77.4 174 39.1
Migut.B00837 Erythranthe guttata HOM05D002729 ORTHO05D003163 2.1e-12 77.4 170 35.3
Ah.09g233880 Amaranthus hybridus HOM05D002729 ORTHO05D003163 2.7e-12 77.0 158 41.1
Sc18g0004160 Simmondsia chinensis HOM05D002729 ORTHO05D003163 3.6e-12 76.6 138 43.5
CSS0015863 Camellia sinensis var. sinensis HOM05D002729 ORTHO05D003163 4.7e-12 76.3 177 37.3
Carub.0007s0488 Capsella rubella HOM05D002729 ORTHO05D003163 4.7e-12 76.3 174 38.5
BcaNung06458 Brassica carinata HOM05D002729 ORTHO05D003163 6.1e-12 75.9 181 34.3
HanXRQChr10g0290681 Helianthus annuus HOM05D002729 ORTHO05D003163 6.1e-12 75.9 142 40.1
SGA_v2.0_scaffold1G00307 Striga asiatica HOM05D002729 ORTHO05D003163 6.1e-12 75.9 122 45.9
AT4G35450 Arabidopsis thaliana HOM05D002729 ORTHO05D003163 1.0e-11 75.1 173 38.7
CARHR243760 Cardamine hirsuta HOM05D002729 ORTHO05D003163 1.0e-11 75.1 173 38.7
Medtr6g034405 Medicago truncatula HOM05D002729 ORTHO05D003163 1.0e-11 75.1 164 38.4
BraA08t34140Z Brassica rapa HOM05D002729 ORTHO05D003163 1.4e-11 74.7 177 36.7
AUR62012848 Chenopodium quinoa HOM05D002729 ORTHO05D003163 1.4e-11 74.7 132 41.7
Dinv41997 Davidia involucrata HOM05D002729 ORTHO05D003163 1.4e-11 74.7 118 46.6
Migut.N01043 Erythranthe guttata HOM05D002729 ORTHO05D003163 1.4e-11 74.7 122 45.1
Mapoly0142s0007 Marchantia polymorpha HOM05D002729 ORTHO05D003163 1.8e-11 74.3 86 50.0
Lsat_1_v5_gn_8_23521 Lactuca sativa HOM05D002729 ORTHO05D003163 2.3e-11 73.9 94 46.8
CSS0032421 Camellia sinensis var. sinensis HOM05D002729 ORTHO05D003163 3.0e-11 73.6 124 42.7
Hund23013 Selenicereus undatus HOM05D002729 ORTHO05D003163 3.0e-11 73.6 176 37.5
Zm00001eb064650 Zea mays HOM05D002729 ORTHO05D003163 3.0e-11 73.6 134 40.3
Manes.15G112400 Manihot esculenta HOM05D002729 ORTHO05D003163 4.0e-11 73.2 134 42.5
Hund04400 Selenicereus undatus HOM05D002729 ORTHO05D003163 5.2e-11 72.8 176 36.9
SEGI_04196 Sequoiadendron giganteum HOM05D002729 ORTHO05D003163 5.2e-11 72.8 122 36.9
Duzib052G0449 Durio zibethinus HOM05D002729 ORTHO05D003163 6.8e-11 72.4 195 40.5
Thhalv10025639m.g Eutrema salsugineum HOM05D002729 ORTHO05D003163 6.8e-11 72.4 174 38.5
CBR_g37530 Chara braunii HOM05D002729 ORTHO05D003163 8.8e-11 72.0 130 39.2
Os08g0539600 Oryza sativa ssp. japonica HOM05D002729 ORTHO05D003163 8.8e-11 72.0 132 34.8
THA.LOC104804301 Tarenaya hassleriana HOM05D002729 ORTHO05D003163 8.8e-11 72.0 175 37.7
BcaNung02391 Brassica carinata HOM05D002729 ORTHO05D003163 1.2e-10 71.6 179 35.2
C07p61140 Brassica napus HOM05D002729 ORTHO05D003163 1.2e-10 71.6 179 35.2
SMO228G0133 Selaginella moellendorffii HOM05D002729 ORTHO05D003163 1.2e-10 71.6 86 48.8
A03p63550 Brassica napus HOM05D002729 ORTHO05D003163 1.5e-10 71.2 176 36.4
BraA03t15425Z Brassica rapa HOM05D002729 ORTHO05D003163 1.5e-10 71.2 176 36.4
CDE07G1191 Ceratophyllum demersum HOM05D002729 ORTHO05D003163 1.5e-10 71.2 137 39.4
FAN27G2173 Fragaria x ananassa HOM05D002729 ORTHO05D003163 1.5e-10 71.2 183 36.6
PGSC0003DMG400024167 Solanum tuberosum HOM05D002729 ORTHO05D003163 1.5e-10 71.2 128 42.2
MBI15_g33456_MAGBIO Magnolia biondii HOM05D002729 ORTHO05D003163 2.0e-10 70.9 170 35.3
Rhsim05G0044300 Rhododendron simsii HOM05D002729 ORTHO05D003163 2.0e-10 70.9 183 37.2
MSTRG.27844 Avicennia marina HOM05D002729 ORTHO05D003163 2.6e-10 70.5 174 37.4
CARHR107550 Cardamine hirsuta HOM05D002729 ORTHO05D003163 2.6e-10 70.5 120 41.7
Sed0002453 Sechium edule HOM05D002729 ORTHO05D003163 2.6e-10 70.5 142 38.7
Aqoxy3G01889 Aquilegia oxysepala HOM05D002729 ORTHO05D003163 3.4e-10 70.1 123 42.3
BcaC01g00495 Brassica carinata HOM05D002729 ORTHO05D003163 3.4e-10 70.1 177 36.7
C03p80670 Brassica napus HOM05D002729 ORTHO05D003163 3.4e-10 70.1 177 36.7
BolC3t20310H Brassica oleracea HOM05D002729 ORTHO05D003163 3.4e-10 70.1 177 36.7
TWI75G1253 Tripterygium wilfordii HOM05D002729 ORTHO05D003163 3.4e-10 70.1 172 40.1
BcaB03g12412 Brassica carinata HOM05D002729 ORTHO05D003163 4.4e-10 69.7 181 42.0
Prupe.8G184200 Prunus persica HOM05D002729 ORTHO05D003163 4.4e-10 69.7 182 37.4
Sed0012003 Sechium edule HOM05D002729 ORTHO05D003163 4.4e-10 69.7 175 36.0
Aa31LG8G14710 Aethionema arabicum HOM05D002729 ORTHO05D003163 5.7e-10 69.3 121 39.7
TWI31G0290 Tripterygium wilfordii HOM05D002729 ORTHO05D003163 5.7e-10 69.3 177 35.0
GSVIVG01023835001 Vitis vinifera HOM05D002729 ORTHO05D003163 5.7e-10 69.3 172 36.6
Thhalv10022709m.g Eutrema salsugineum HOM05D002729 ORTHO05D003163 7.5e-10 68.9 172 37.8
Os03g0851700 Oryza sativa ssp. japonica HOM05D002729 ORTHO05D003163 7.5e-10 68.9 133 40.6
Sabra04G0141800 Salix brachista HOM05D002729 ORTHO05D003163 7.5e-10 68.9 159 36.5
SalBow5G1968 Salvia bowleyana HOM05D002729 ORTHO05D003163 7.5e-10 68.9 119 41.2
Sp7g33220 Schrenkiella parvula HOM05D002729 ORTHO05D003163 7.5e-10 68.9 174 37.4
Sed0015707 Sechium edule HOM05D002729 ORTHO05D003163 7.5e-10 68.9 172 34.9
Carub.0003s3144 Capsella rubella HOM05D002729 ORTHO05D003163 9.8e-10 68.6 175 36.0
CDE06G1931 Ceratophyllum demersum HOM05D002729 ORTHO05D003163 9.8e-10 68.6 162 35.8
Lsat_1_v5_gn_7_77580 Lactuca sativa HOM05D002729 ORTHO05D003163 9.8e-10 68.6 88 47.7
Nitab4.5_0000816g0020 Nicotiana tabacum HOM05D002729 ORTHO05D003163 9.8e-10 68.6 174 37.9
Nitab4.5_0003344g0010 Nicotiana tabacum HOM05D002729 ORTHO05D003163 9.8e-10 68.6 174 37.9
Sabra04G0141700 Salix brachista HOM05D002729 ORTHO05D003163 9.8e-10 68.6 160 37.5
unitig_749.g14124 Utricularia gibba HOM05D002729 ORTHO05D003163 9.8e-10 68.6 170 36.5
Nitab4.5_0005103g0030 Nicotiana tabacum HOM05D002729 ORTHO05D003163 1.3e-09 68.2 166 38.6
AT2G17390 Arabidopsis thaliana HOM05D002729 ORTHO05D003163 1.7e-09 67.8 174 35.6
BcaB03g16501 Brassica carinata HOM05D002729 ORTHO05D003163 2.2e-09 67.4 121 38.8
C01p03480 Brassica napus HOM05D002729 ORTHO05D003163 2.2e-09 67.4 177 36.7
BolC1t00335H Brassica oleracea HOM05D002729 ORTHO05D003163 2.2e-09 67.4 177 36.7
Gohir.D02G192000 Gossypium hirsutum HOM05D002729 ORTHO05D003163 2.2e-09 67.4 94 47.9
Gorai.005G214800 Gossypium raimondii HOM05D002729 ORTHO05D003163 2.2e-09 67.4 94 47.9
Lalb_Chr04g0264251 Lupinus albus HOM05D002729 ORTHO05D003163 2.2e-09 67.4 112 43.8
Pp3c8_5560 Physcomitrium patens HOM05D002729 ORTHO05D003163 2.2e-09 67.4 84 47.6
BcaNung00593 Brassica carinata HOM05D002729 ORTHO05D003163 2.8e-09 67.0 177 36.7
Ciclev10012463m.g Citrus clementina HOM05D002729 ORTHO05D003163 2.8e-09 67.0 180 42.8
BcaC06g36283 Brassica carinata HOM05D002729 ORTHO05D003163 3.7e-09 66.6 122 38.5
A01p03130 Brassica napus HOM05D002729 ORTHO05D003163 3.7e-09 66.6 177 36.7
A07p03650 Brassica napus HOM05D002729 ORTHO05D003163 3.7e-09 66.6 122 38.5
C07p05880 Brassica napus HOM05D002729 ORTHO05D003163 3.7e-09 66.6 122 38.5
BolC7t40992H Brassica oleracea HOM05D002729 ORTHO05D003163 3.7e-09 66.6 122 38.5
BraA01t00297Z Brassica rapa HOM05D002729 ORTHO05D003163 3.7e-09 66.6 177 36.7
BraA07t28154Z Brassica rapa HOM05D002729 ORTHO05D003163 3.7e-09 66.6 122 38.5
A08p21870 Brassica napus HOM05D002729 ORTHO05D003163 4.8e-09 66.2 177 41.2
Duzib248G0051 Durio zibethinus HOM05D002729 ORTHO05D003163 4.8e-09 66.2 193 40.9
Gohir.A12G011600 Gossypium hirsutum HOM05D002729 ORTHO05D003163 6.3e-09 65.9 81 51.9
Hund22926 Selenicereus undatus HOM05D002729 ORTHO05D003163 6.3e-09 65.9 113 42.5
Aa31LG6G12430 Aethionema arabicum HOM05D002729 ORTHO05D003163 8.3e-09 65.5 124 39.5
Zm00001eb318200 Zea mays HOM05D002729 ORTHO05D003163 8.3e-09 65.5 110 40.9
BcaNung03629 Brassica carinata HOM05D002729 ORTHO05D003163 1.1e-08 65.1 112 41.1
Potri.004G210000 Populus trichocarpa HOM05D002729 ORTHO05D003163 1.1e-08 65.1 99 45.5
SGA_v2.0_scaffold145G36073 Striga asiatica HOM05D002729 ORTHO05D003163 1.4e-08 64.7 107 43.9
Sp3g30720 Schrenkiella parvula HOM05D002729 ORTHO05D003163 2.4e-08 63.9 174 34.5
AL3G50270 Arabidopsis lyrata HOM05D002729 ORTHO05D003163 3.1e-08 63.5 174 42.0
CANSAT25G1626 Cannabis sativa HOM05D002729 ORTHO05D003163 3.1e-08 63.5 139 43.2
ECA240G4174 Erigeron canadensis HOM05D002729 ORTHO05D003163 4.1e-08 63.2 94 44.7
Gohir.D04G150700 Gossypium hirsutum HOM05D002729 ORTHO05D003163 4.1e-08 63.2 150 38.7
HanXRQChr09g0246081 Helianthus annuus HOM05D002729 ORTHO05D003163 4.1e-08 63.2 97 43.3
Cc02_g22490 Coffea canephora HOM05D002729 ORTHO05D003163 5.4e-08 62.8 162 35.8
Gohir.A04G110400 Gossypium hirsutum HOM05D002729 ORTHO05D003163 5.4e-08 62.8 150 38.7
SEGI_36740 Sequoiadendron giganteum HOM05D002729 ORTHO05D003163 5.4e-08 62.8 127 33.9
vmacro10879 Vaccinium macrocarpon HOM05D002729 ORTHO05D003163 5.4e-08 62.8 134 41.8
HanXRQChr03g0071741 Helianthus annuus HOM05D002729 ORTHO05D003163 7.0e-08 62.4 98 41.8
FAN24G3453 Fragaria x ananassa HOM05D002729 ORTHO05D003163 9.1e-08 62.0 197 34.5
Medtr3g114110 Medicago truncatula HOM05D002729 ORTHO05D003163 9.1e-08 62.0 154 35.1
Nitab4.5_0001706g0040 Nicotiana tabacum HOM05D002729 ORTHO05D003163 1.2e-07 61.6 152 37.5
Duzib132G1137 Durio zibethinus HOM05D002729 ORTHO05D003163 1.6e-07 61.2 187 39.6
Lsat_1_v5_gn_9_118940 Lactuca sativa HOM05D002729 ORTHO05D003163 1.6e-07 61.2 97 42.3
Thecc.02G150200 Theobroma cacao HOM05D002729 ORTHO05D003163 2.0e-07 60.8 150 40.7
Atru.chr8.1048 Acer truncatum HOM05D002729 ORTHO05D003163 2.7e-07 60.5 135 39.3
Gohir.D12G011740 Gossypium hirsutum HOM05D002729 ORTHO05D003163 2.7e-07 60.5 76 51.3
MD10G1145800 Malus domestica HOM05D002729 ORTHO05D003163 2.7e-07 60.5 96 43.8
Medtr1g054600 Medicago truncatula HOM05D002729 ORTHO05D003163 2.7e-07 60.5 99 41.4
TAR625G0581 Trochodendron aralioides HOM05D002729 ORTHO05D003163 4.5e-07 59.7 138 39.1
CAN.G1577.22 Capsicum annuum HOM05D002729 ORTHO05D003163 5.9e-07 59.3 138 37.7
Gohir.A13G063600 Gossypium hirsutum HOM05D002729 ORTHO05D003163 5.9e-07 59.3 120 40.0
Gohir.D13G058300 Gossypium hirsutum HOM05D002729 ORTHO05D003163 5.9e-07 59.3 120 40.0
Gorai.013G065700 Gossypium raimondii HOM05D002729 ORTHO05D003163 5.9e-07 59.3 120 40.0
Medtr1g054540 Medicago truncatula HOM05D002729 ORTHO05D003163 5.9e-07 59.3 99 42.4
Medtr1g054620 Medicago truncatula HOM05D002729 ORTHO05D003163 5.9e-07 59.3 99 42.4
Oeu008893.2 Olea europaea HOM05D002729 ORTHO05D003163 5.9e-07 59.3 90 46.7
Solyc01g104170.3 Solanum lycopersicum HOM05D002729 ORTHO05D003163 5.9e-07 59.3 137 36.5
Peaxi162Scf00011g00428 Petunia axillaris HOM05D002729 ORTHO05D003163 7.7e-07 58.9 140 37.9
Sopen01g046610 Solanum pennellii HOM05D002729 ORTHO05D003163 7.7e-07 58.9 137 36.5
CDE04G0411 Ceratophyllum demersum HOM05D002729 ORTHO05D003163 1.3e-06 58.2 126 35.7
FAN15G2193 Fragaria x ananassa HOM05D002729 ORTHO05D003163 1.3e-06 58.2 66 53.0
PGSC0003DMG401023760 Solanum tuberosum HOM05D002729 ORTHO05D003163 1.3e-06 58.2 140 37.9
arahy.Tifrunner.gnm1.ann1.JT7AJ7 Arachis hypogaea HOM05D002729 ORTHO05D003163 1.7e-06 57.8 60 58.3
Zm00001eb198300 Zea mays HOM05D002729 ORTHO05D003163 1.7e-06 57.8 135 34.1
HanXRQChr16g0513931 Helianthus annuus HOM05D002729 ORTHO05D003163 2.3e-06 57.4 93 41.9
Peaxi162Scf00003g03824 Petunia axillaris HOM05D002729 ORTHO05D003163 2.9e-06 57.0 99 43.4
FvH4_2g17270 Fragaria vesca HOM05D002729 ORTHO05D003163 5.0e-06 56.2 168 34.5
unitig_8.g2954 Utricularia gibba HOM05D004546 ORTHO05D005419 6.5e-06 55.8 49 57.1


User provided reference genes

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