Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G5393 Trifolium pratense HOM05D005890 ORTHO05D006717 1.3e-166 590.1 420 100.0
Medtr4g127160 Medicago truncatula HOM05D005890 ORTHO05D006717 1.2e-106 391.0 430 69.3
Lj4g0027857 Lotus japonicus HOM05D005890 ORTHO05D006717 1.6e-74 284.3 438 57.3
VMungo1215G0729 Vigna mungo HOM05D005890 ORTHO05D006717 2.3e-73 280.4 431 49.4
Glyma.17G058000 Glycine max HOM05D005890 ORTHO05D006717 9.8e-69 265.0 407 50.6
Glyma.13G101600 Glycine max HOM05D005890 ORTHO05D006717 1.3e-68 264.6 435 50.6
Phvul.003G140452 Phaseolus vulgaris HOM05D005890 ORTHO05D006717 5.6e-64 249.2 438 48.2
Lalb_Chr13g0299851 Lupinus albus HOM05D005890 ORTHO05D006717 2.8e-63 246.9 432 53.0
arahy.Tifrunner.gnm1.ann1.V3N0NP Arachis hypogaea HOM05D005890 ORTHO05D006717 3.4e-61 240.0 449 49.0
Ca_21262_v3 Cicer arietinum L. HOM05D005890 ORTHO05D006717 1.7e-60 237.7 426 44.1
arahy.Tifrunner.gnm1.ann1.CB00ZF Arachis hypogaea HOM05D005890 ORTHO05D006717 1.1e-59 235.0 450 47.8
Psat4g014480 Pisum sativum HOM05D005890 ORTHO05D006717 6.0e-58 229.2 300 74.3
MD16G1246300 Malus domestica HOM05D005890 ORTHO05D006717 1.4e-38 164.9 442 36.7
ClCG06G013720 Citrullus lanatus HOM05D005890 ORTHO05D006717 1.8e-38 164.5 453 34.0
CiPaw.07G198700 Carya illinoinensis HOM05D005890 ORTHO05D006717 5.2e-38 162.9 412 36.4
FAN12G2329 Fragaria x ananassa HOM05D005890 ORTHO05D006717 8.9e-38 162.2 424 34.7
FAN17G2561 Fragaria x ananassa HOM05D005890 ORTHO05D006717 1.2e-37 161.8 416 34.4
CANSAT01G0113 Cannabis sativa HOM05D005890 ORTHO05D006717 4.4e-37 159.8 425 40.7
Migut.L01872 Erythranthe guttata HOM05D005890 ORTHO05D006717 4.4e-37 159.8 423 36.4
Cfa013466 Carpinus fangiana HOM05D005890 ORTHO05D006717 9.9e-37 158.7 481 35.8
AUR62027422 Chenopodium quinoa HOM05D005890 ORTHO05D006717 3.8e-36 156.8 423 42.3
Peaxi162Scf00046g00417 Petunia axillaris HOM05D005890 ORTHO05D006717 3.8e-36 156.8 433 40.2
FAN07G1770 Fragaria x ananassa HOM05D005890 ORTHO05D006717 4.9e-36 156.4 416 33.7
Thecc.09G191500 Theobroma cacao HOM05D005890 ORTHO05D006717 8.4e-36 155.6 471 35.9
THA.LOC104817770 Tarenaya hassleriana HOM05D005890 ORTHO05D006717 1.4e-35 154.8 428 47.7
PGSC0003DMG400019897 Solanum tuberosum HOM05D005890 ORTHO05D006717 2.4e-35 154.1 443 43.3
Potri.006G073100 Populus trichocarpa HOM05D005890 ORTHO05D006717 4.2e-35 153.3 473 41.6
Manes.06G017800 Manihot esculenta HOM05D005890 ORTHO05D006717 9.2e-35 152.1 498 33.5
Hma1.2p1_0235F.1_g098760 Hydrangea macrophylla HOM05D005890 ORTHO05D006717 1.6e-34 151.4 475 32.8
Nitab4.5_0004916g0020 Nicotiana tabacum HOM05D005890 ORTHO05D006717 1.6e-34 151.4 425 44.5
TWI32G1283 Tripterygium wilfordii HOM05D005890 ORTHO05D006717 4.6e-34 149.8 483 31.7
Sed0014693 Sechium edule HOM05D005890 ORTHO05D006717 6.0e-34 149.4 429 32.4
QL07p048247 Quercus lobata HOM05D005890 ORTHO05D006717 1.0e-33 148.7 488 30.3
GSVIVG01029286001 Vitis vinifera HOM05D005890 ORTHO05D006717 1.3e-33 148.3 466 38.0
Gohir.A05G408300 Gossypium hirsutum HOM05D005890 ORTHO05D006717 1.7e-33 147.9 426 45.8
CsaV3_3G012070 Cucumis sativus L. HOM05D005890 ORTHO05D006717 3.9e-33 146.7 456 33.8
Potri.018G140200 Populus trichocarpa HOM05D005890 ORTHO05D006717 3.9e-33 146.7 470 32.1
Duzib170G1164 Durio zibethinus HOM05D005890 ORTHO05D006717 5.1e-33 146.4 520 33.3
Nitab4.5_0000028g0410 Nicotiana tabacum HOM05D005890 ORTHO05D006717 5.1e-33 146.4 411 38.7
Sed0024384 Sechium edule HOM05D005890 ORTHO05D006717 5.1e-33 146.4 388 37.4
Ciclev10008727m.g Citrus clementina HOM05D005890 ORTHO05D006717 8.7e-33 145.6 137 64.2
Sopen07g004220 Solanum pennellii HOM05D005890 ORTHO05D006717 1.1e-32 145.2 420 43.1
Aa31LG3G13020 Aethionema arabicum HOM05D005890 ORTHO05D006717 1.5e-32 144.8 413 41.9
Oeu063100.1 Olea europaea HOM05D005890 ORTHO05D006717 1.9e-32 144.4 136 64.0
Sp6g18850 Schrenkiella parvula HOM05D005890 ORTHO05D006717 1.9e-32 144.4 429 38.9
MELO3C006422.2 Cucumis melo HOM05D005890 ORTHO05D006717 2.5e-32 144.1 442 33.0
HanXRQChr03g0065401 Helianthus annuus HOM05D005890 ORTHO05D006717 2.5e-32 144.1 418 38.8
Eucgr.C02214 Eucalyptus grandis HOM05D005890 ORTHO05D006717 3.3e-32 143.7 466 34.1
Thhalv10013871m.g Eutrema salsugineum HOM05D005890 ORTHO05D006717 5.6e-32 142.9 432 38.9
CARHR270890 Cardamine hirsuta HOM05D005890 ORTHO05D006717 1.2e-31 141.7 411 43.8
Gorai.012G008900 Gossypium raimondii HOM05D005890 ORTHO05D006717 1.2e-31 141.7 426 42.7
Sabra06G0054500 Salix brachista HOM05D005890 ORTHO05D006717 1.2e-31 141.7 468 37.0
THA.LOC104813501 Tarenaya hassleriana HOM05D005890 ORTHO05D006717 1.2e-31 141.7 392 46.7
Solyc07g008330.3 Solanum lycopersicum HOM05D005890 ORTHO05D006717 1.6e-31 141.4 407 42.8
unitig_8.g3553 Utricularia gibba HOM05D005890 ORTHO05D006717 2.8e-31 140.6 445 31.9
AUR62031274 Chenopodium quinoa HOM05D005890 ORTHO05D006717 6.2e-31 139.4 421 33.0
DCAR_018014 Daucus carota HOM05D005890 ORTHO05D006717 1.1e-30 138.7 424 35.8
Cc03_g15250 Coffea canephora HOM05D005890 ORTHO05D006717 5.3e-30 136.3 481 34.9
CSS0049336 Camellia sinensis var. sinensis HOM05D005890 ORTHO05D006717 1.5e-29 134.8 170 49.4
Atru.chr7.926 Acer truncatum HOM05D005890 ORTHO05D006717 2.0e-29 134.4 127 62.2
Cpa.g.sc115.65 Carica papaya HOM05D005890 ORTHO05D006717 2.0e-29 134.4 140 55.0
ECA240G0208 Erigeron canadensis HOM05D005890 ORTHO05D006717 2.0e-29 134.4 153 56.2
EL10Ac8g19296 Beta vulgaris HOM05D005890 ORTHO05D006717 2.6e-29 134.0 465 36.6
SGA_v2.0_scaffold392G50652 Striga asiatica HOM05D005890 ORTHO05D006717 3.4e-29 133.7 138 56.5
Atru.BG.17.p Acer truncatum HOM05D005890 ORTHO05D006717 4.4e-29 133.3 409 35.5
BcaC04g20011 Brassica carinata HOM05D005890 ORTHO05D006717 4.4e-29 133.3 106 67.9
TAR637G0001 Trochodendron aralioides HOM05D005890 ORTHO05D006717 5.8e-29 132.9 86 77.9
BcaB08g36002 Brassica carinata HOM05D005890 ORTHO05D006717 7.6e-29 132.5 105 68.6
PGR044G2166 Punica granatum HOM05D005890 ORTHO05D006717 7.6e-29 132.5 473 34.0
Prupe.1G073000 Prunus persica HOM05D005890 ORTHO05D006717 9.9e-29 132.1 453 33.8
Aqoxy7G02888 Aquilegia oxysepala HOM05D005890 ORTHO05D006717 1.3e-28 131.7 150 52.7
Dinv41195 Davidia involucrata HOM05D005890 ORTHO05D006717 2.2e-28 131.0 585 27.4
RcHm_v2.0_Chr4g0398981 Rosa chinensis HOM05D005890 ORTHO05D006717 2.9e-28 130.6 440 34.8
CAN.G403.1 Capsicum annuum HOM05D005890 ORTHO05D006717 4.9e-28 129.8 408 36.3
Dinv25461 Davidia involucrata HOM05D005890 ORTHO05D006717 4.9e-28 129.8 547 29.6
TWI34G1560 Tripterygium wilfordii HOM05D005890 ORTHO05D006717 4.9e-28 129.8 441 32.7
HanXRQChr10g0308981 Helianthus annuus HOM05D005890 ORTHO05D006717 8.4e-28 129.0 393 49.1
Rhsim01G0114500 Rhododendron simsii HOM05D005890 ORTHO05D006717 1.4e-27 128.3 528 29.9
CDE02G0471 Ceratophyllum demersum HOM05D005890 ORTHO05D006717 1.9e-27 127.9 450 30.0
BcaC03g14182 Brassica carinata HOM05D005890 ORTHO05D006717 4.2e-27 126.7 412 45.1
C02p14590 Brassica napus HOM05D005890 ORTHO05D006717 4.2e-27 126.7 412 45.1
BolC2t07586H Brassica oleracea HOM05D005890 ORTHO05D006717 4.2e-27 126.7 412 45.1
Nn8g40670 Nelumbo nucifera HOM05D005890 ORTHO05D006717 4.2e-27 126.7 139 54.0
Ah.14g085350 Amaranthus hybridus HOM05D005890 ORTHO05D006717 9.3e-27 125.6 429 32.4
ATR1098G092 Amborella trichopoda HOM05D005890 ORTHO05D006717 1.2e-26 125.2 141 55.3
ECA234G0353 Erigeron canadensis HOM05D005890 ORTHO05D006717 3.5e-26 123.6 385 43.4
Lsat_1_v5_gn_5_83860 Lactuca sativa HOM05D005890 ORTHO05D006717 3.5e-26 123.6 381 44.9
MSTRG.26556 Avicennia marina HOM05D005890 ORTHO05D006717 6.0e-26 122.9 482 28.6
BcaB05g22318 Brassica carinata HOM05D005890 ORTHO05D006717 6.0e-26 122.9 410 40.5
A02p08710 Brassica napus HOM05D005890 ORTHO05D006717 2.3e-25 120.9 412 41.5
BraA02t05941Z Brassica rapa HOM05D005890 ORTHO05D006717 2.3e-25 120.9 412 42.5
Os12g0613500 Oryza sativa ssp. japonica HOM05D005890 ORTHO05D006717 2.3e-25 120.9 136 55.1
Zm00001eb136110 Zea mays HOM05D005890 ORTHO05D006717 2.3e-25 120.9 138 51.4
Hund24378 Selenicereus undatus HOM05D005890 ORTHO05D006717 6.6e-25 119.4 494 40.7
SEGI_20539 Sequoiadendron giganteum HOM05D005890 ORTHO05D006717 8.7e-25 119.0 135 53.3
vmacro20806 Vaccinium macrocarpon HOM05D005890 ORTHO05D006717 1.5e-24 118.2 193 40.9
SGA_v2.0_scaffold41G15805 Striga asiatica HOM05D005890 ORTHO05D006717 1.9e-24 117.9 496 30.0
C09p48820 Brassica napus HOM05D005890 ORTHO05D006717 3.3e-24 117.1 407 33.9
BolC9t57729H Brassica oleracea HOM05D005890 ORTHO05D006717 3.3e-24 117.1 407 33.9
HPP92_018699 Vanilla planifolia HOM05D005890 ORTHO05D006717 4.3e-24 116.7 143 53.1
Actinidia02494 Actinidia chinensis HOM05D005890 ORTHO05D006717 5.6e-24 116.3 484 29.5
CDE05G3513 Ceratophyllum demersum HOM05D005890 ORTHO05D006717 5.6e-24 116.3 159 46.5
Lsat_1_v5_gn_7_55781 Lactuca sativa HOM05D005890 ORTHO05D006717 1.3e-23 115.2 438 37.7
MBI14_g15782_MAGBIO Magnolia biondii HOM05D005890 ORTHO05D006717 6.2e-23 112.8 147 48.3
AagrBONN_evm.TU.Sc2ySwM_368.973 Anthoceros agrestis HOM05D005890 ORTHO05D006717 9.9e-21 105.5 140 45.0
Zm00001eb172010 Zea mays HOM05D005890 ORTHO05D006717 9.9e-21 105.5 80 65.0
CBR_g20282 Chara braunii HOM05D000019 ORTHO05D000002 2.2e-20 104.4 79 65.8
PSO063G0609 Papaver somniferum HOM05D005890 ORTHO05D006717 2.9e-20 104.0 468 40.4
Mapoly0009s0141 Marchantia polymorpha HOM05D005890 ORTHO05D006717 3.8e-20 103.6 136 47.8
PSO170G0082 Papaver somniferum HOM05D005890 ORTHO05D006717 1.1e-19 102.1 448 41.1
Carub.0008s1762 Capsella rubella HOM05D005890 ORTHO05D006717 1.4e-19 101.7 93 60.2
Pp3c3_34440 Physcomitrium patens HOM05D005890 ORTHO05D006717 3.2e-19 100.5 133 51.1
Pp3c3_34441 Physcomitrium patens HOM05D005890 ORTHO05D006717 3.2e-19 100.5 133 51.1
SEGI_22268 Sequoiadendron giganteum HOM05D005890 ORTHO05D006717 4.2e-19 100.1 62 75.8
AT5G57120 Arabidopsis thaliana HOM05D005890 ORTHO05D006717 7.9e-18 95.9 406 34.5
MBI18_g10586_MAGBIO Magnolia biondii HOM05D005890 ORTHO05D006717 3.0e-17 94.0 514 32.7
COL.COLO4_08570 Corchorus olitorius HOM05D005890 ORTHO05D006717 5.6e-16 89.7 558 25.8
SMO337G0105 Selaginella moellendorffii HOM05D004944 ORTHO05D005989 2.8e-15 87.4 92 58.7
AL8G33040 Arabidopsis lyrata HOM05D005890 ORTHO05D006717 6.9e-14 82.8 387 32.0
Haze_22044 Corylus avellana HOM05D005890 ORTHO05D006717 9.9e-13 79.0 113 46.9
Cre01.g055400 Chlamydomonas reinhardtii HOM05D005890 ORTHO05D006717 2.9e-12 77.4 78 55.1
MCO09G065 Micromonas commoda HOM05D005890 ORTHO05D006717 7.1e-11 72.8 80 56.2
Zm00001eb394450 Zea mays HOM05D014690 ORTHO05D006717 1.2e-10 72.0 55 63.6
Cpa.g.c33129.1 Carica papaya HOM05D005890 ORTHO05D006717 2.5e-08 64.3 100 48.0
CSS0049604 Camellia sinensis var. sinensis HOM05D005890 ORTHO05D006717 4.3e-08 63.5 177 34.5
FvH4_4g06950 Fragaria vesca HOM05D005890 ORTHO05D006717 5.6e-08 63.2 368 26.6
A10p14440 Brassica napus HOM05D005890 ORTHO05D006717 2.1e-07 61.2 34 79.4
BraA10t43535Z Brassica rapa HOM05D005890 ORTHO05D006717 2.1e-07 61.2 34 79.4
CiPaw.08G031700 Carya illinoinensis HOM05D005890 ORTHO05D006717 2.8e-07 60.8 183 30.6
MD13G1240600 Malus domestica HOM05D005890 ORTHO05D006717 8.2e-07 59.3 434 24.9


User provided reference genes

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