Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G5383 Trifolium pratense HOM05D000054 ORTHO05D023318 2.6e-47 192.2 134 100.0
Medtr4g126930 Medicago truncatula HOM05D000054 ORTHO05D000286 6.8e-24 114.4 57 93.0
Ca_21273_v3 Cicer arietinum L. HOM05D000054 ORTHO05D000286 6.4e-22 107.8 52 98.1
Lj4g0019663 Lotus japonicus HOM05D000054 ORTHO05D000286 4.1e-21 105.1 88 63.6
Phvul.003G137700 Phaseolus vulgaris HOM05D000054 ORTHO05D000286 4.1e-21 105.1 89 66.3
Glyma.15G169000 Glycine max HOM05D000054 ORTHO05D000286 4.6e-20 101.7 89 60.7
Glyma.17G055900 Glycine max HOM05D000054 ORTHO05D000286 3.9e-19 98.6 88 60.2
Glyma.09G062500 Glycine max HOM05D000054 ORTHO05D000286 2.8e-17 92.4 89 57.3
Phvul.009G233300 Phaseolus vulgaris HOM05D000054 ORTHO05D000286 2.8e-17 92.4 88 52.3
VMungo1215G1377 Vigna mungo HOM05D000054 ORTHO05D000286 6.2e-17 91.3 49 87.8
Medtr2g038675 Medicago truncatula HOM05D000054 ORTHO05D000286 3.1e-16 89.0 85 56.5
arahy.Tifrunner.gnm1.ann1.8HXU4G Arachis hypogaea HOM05D000054 ORTHO05D000286 2.6e-15 85.9 92 53.3
arahy.Tifrunner.gnm1.ann1.MKUM1Y Arachis hypogaea HOM05D000054 ORTHO05D000286 2.6e-15 85.9 79 53.2
arahy.Tifrunner.gnm1.ann1.HJ0ARX Arachis hypogaea HOM05D000054 ORTHO05D000286 3.4e-15 85.5 90 53.3
Lj6g0020584 Lotus japonicus HOM05D000054 ORTHO05D000286 1.7e-14 83.2 92 54.3
VMungo1309G0530 Vigna mungo HOM05D000054 ORTHO05D000286 2.9e-14 82.4 89 49.4
arahy.Tifrunner.gnm1.ann1.42IH8X Arachis hypogaea HOM05D000054 ORTHO05D000286 5.4e-13 78.2 58 60.3
Ciclev10010318m.g Citrus clementina HOM05D000054 ORTHO05D000286 5.4e-13 78.2 58 60.3
Dinv41212 Davidia involucrata HOM05D000054 ORTHO05D000286 5.4e-13 78.2 57 59.6
Aqoxy7G02944 Aquilegia oxysepala HOM05D000054 ORTHO05D000286 9.2e-13 77.4 46 73.9
CSS0018936 Camellia sinensis var. sinensis HOM05D000054 ORTHO05D000286 1.6e-12 76.6 58 62.1
CSS0024911 Camellia sinensis var. sinensis HOM05D000054 ORTHO05D023318 1.6e-12 76.6 56 64.3
Eucgr.C02204 Eucalyptus grandis HOM05D000054 ORTHO05D000286 1.6e-12 76.6 58 60.3
Actinidia30569 Actinidia chinensis HOM05D000054 ORTHO05D023318 2.1e-12 76.3 57 64.9
MD13G1236800 Malus domestica HOM05D000054 ORTHO05D000286 2.1e-12 76.3 65 58.5
Duzib168G0653 Durio zibethinus HOM05D000054 ORTHO05D000286 4.6e-12 75.1 56 60.7
Prupe.1G068800 Prunus persica HOM05D000054 ORTHO05D000286 4.6e-12 75.1 58 60.3
PGR044G0679 Punica granatum HOM05D000054 ORTHO05D000286 6.0e-12 74.7 57 61.4
COL.COLO4_37562 Corchorus olitorius HOM05D000054 ORTHO05D000286 7.8e-12 74.3 55 63.6
Manes.14G174200 Manihot esculenta HOM05D000054 ORTHO05D000286 7.8e-12 74.3 49 69.4
Thecc.09G200700 Theobroma cacao HOM05D000054 ORTHO05D000286 7.8e-12 74.3 41 78.0
TAR383G1041 Trochodendron aralioides HOM05D000054 ORTHO05D000286 7.8e-12 74.3 56 67.9
Cpa.g.sc59.96 Carica papaya HOM05D000054 ORTHO05D000286 1.0e-11 73.9 57 61.4
FvH4_4g06650 Fragaria vesca HOM05D000054 ORTHO05D000286 1.3e-11 73.6 63 55.6
FAN12G1624 Fragaria x ananassa HOM05D008207 ORTHO05D000286 1.3e-11 73.6 63 55.6
Lsat_1_v5_gn_7_53981 Lactuca sativa HOM05D000054 ORTHO05D000286 1.3e-11 73.6 63 55.6
Potri.018G132900 Populus trichocarpa HOM05D000054 ORTHO05D000286 1.3e-11 73.6 58 58.6
FAN07G0484 Fragaria x ananassa HOM05D008207 ORTHO05D010373 1.7e-11 73.2 63 55.6
Atru.chr7.910 Acer truncatum HOM05D000054 ORTHO05D000286 2.3e-11 72.8 42 78.6
Haze_22070 Corylus avellana HOM05D000054 ORTHO05D000286 2.3e-11 72.8 57 59.6
PSO063G2689 Papaver somniferum HOM05D000054 ORTHO05D000286 2.3e-11 72.8 57 59.6
Psat0s449g0040 Pisum sativum HOM05D000054 ORTHO05D000286 2.3e-11 72.8 57 63.2
Potri.006G071300 Populus trichocarpa HOM05D000054 ORTHO05D000286 2.3e-11 72.8 63 57.1
VMungo0720G2359 Vigna mungo HOM05D000774 ORTHO05D023318 2.3e-11 72.8 62 53.2
ECA240G3416 Erigeron canadensis HOM05D000054 ORTHO05D000286 3.9e-11 72.0 39 79.5
GSVIVG01029233001 Vitis vinifera HOM05D000054 ORTHO05D000286 3.9e-11 72.0 57 56.1
Migut.J01505 Erythranthe guttata HOM05D000054 ORTHO05D000286 5.1e-11 71.6 51 64.7
Gorai.004G022600 Gossypium raimondii HOM05D000054 ORTHO05D000286 5.1e-11 71.6 52 59.6
Cfa013487 Carpinus fangiana HOM05D000054 ORTHO05D023318 6.6e-11 71.2 41 75.6
Gohir.A08G016000 Gossypium hirsutum HOM05D000054 ORTHO05D000286 8.6e-11 70.9 52 59.6
Gohir.D08G026200 Gossypium hirsutum HOM05D000054 ORTHO05D000286 8.6e-11 70.9 52 59.6
Cc06_g12970 Coffea canephora HOM05D000054 ORTHO05D000286 1.1e-10 70.5 49 63.3
FAN22G1797 Fragaria x ananassa HOM05D008207 ORTHO05D010373 1.1e-10 70.5 63 54.0
Oeu025696.1 Olea europaea HOM05D000054 ORTHO05D000286 1.5e-10 70.1 63 54.0
RcHm_v2.0_Chr4g0398541 Rosa chinensis HOM05D000054 ORTHO05D000286 1.5e-10 70.1 63 57.1
CiPaw.08G030000 Carya illinoinensis HOM05D000054 ORTHO05D000286 1.9e-10 69.7 40 75.0
Nitab4.5_0000957g0100 Nicotiana tabacum HOM05D000054 ORTHO05D000286 1.9e-10 69.7 48 66.7
Peaxi162Scf01558g00018 Petunia axillaris HOM05D000054 ORTHO05D000286 1.9e-10 69.7 44 70.5
Nitab4.5_0011013g0010 Nicotiana tabacum HOM05D000054 ORTHO05D000286 4.3e-10 68.6 48 64.6
Os04g0658700 Oryza sativa ssp. japonica HOM05D000054 ORTHO05D000286 4.3e-10 68.6 55 56.4
SalBow6G5018 Salvia bowleyana HOM05D000054 ORTHO05D000286 4.3e-10 68.6 40 72.5
Lsat_1_v5_gn_5_85801 Lactuca sativa HOM05D000054 ORTHO05D000286 7.3e-10 67.8 58 51.7
MBI14_g40359_MAGBIO Magnolia biondii HOM05D000054 ORTHO05D000286 7.3e-10 67.8 55 56.4
MBI16_g44670_MAGBIO Magnolia biondii HOM05D000054 ORTHO05D031587 7.3e-10 67.8 62 53.2
Oeu056502.1 Olea europaea HOM05D000054 ORTHO05D000286 7.3e-10 67.8 40 72.5
CAN.G1495.8 Capsicum annuum HOM05D000054 ORTHO05D000286 1.6e-09 66.6 45 68.9
Sabra06G0053000 Salix brachista HOM05D000066 ORTHO05D000286 1.6e-09 66.6 45 66.7
HPP92_015375 Vanilla planifolia HOM05D000054 ORTHO05D000286 2.1e-09 66.2 58 58.6
CANSAT01G0307 Cannabis sativa HOM05D000054 ORTHO05D000286 2.8e-09 65.9 41 70.7
MELO3C017405.2 Cucumis melo HOM05D000054 ORTHO05D000286 2.8e-09 65.9 58 48.3
CsaV3_1G032110 Cucumis sativus L. HOM05D000054 ORTHO05D000286 2.8e-09 65.9 56 57.1
ECA234G3140 Erigeron canadensis HOM05D000054 ORTHO05D000286 2.8e-09 65.9 67 52.2
MD16G1241900 Malus domestica HOM05D000054 ORTHO05D000286 2.8e-09 65.9 35 82.9
HanXRQChr05g0142231 Helianthus annuus HOM05D000054 ORTHO05D000286 3.6e-09 65.5 41 65.9
HPP92_018362 Vanilla planifolia HOM05D000054 ORTHO05D000286 3.6e-09 65.5 49 61.2
ClCG06G013920 Citrullus lanatus HOM05D000054 ORTHO05D000286 4.7e-09 65.1 58 50.0
HanXRQChr07g0202141 Helianthus annuus HOM05D000054 ORTHO05D000286 4.7e-09 65.1 40 67.5
Zm00001eb067640 Zea mays HOM05D000054 ORTHO05D000286 4.7e-09 65.1 86 40.7
CiPaw.07G200500 Carya illinoinensis HOM05D000054 ORTHO05D000286 6.2e-09 64.7 38 73.7
MBI14_g05314_MAGBIO Magnolia biondii HOM05D000054 ORTHO05D000286 8.1e-09 64.3 54 53.7
TWI63G1415 Tripterygium wilfordii HOM05D000054 ORTHO05D000286 2.4e-08 62.8 59 49.2
Lsat_1_v5_gn_8_68960 Lactuca sativa HOM05D000054 ORTHO05D000286 4.0e-08 62.0 40 65.0
Solyc07g006940.3 Solanum lycopersicum HOM05D000054 ORTHO05D000286 5.2e-08 61.6 38 71.1
ATR0580G152 Amborella trichopoda HOM05D000022 ORTHO05D000286 1.5e-07 60.1 59 45.8
Sed0010618 Sechium edule HOM05D000054 ORTHO05D000286 9.9e-07 57.4 40 62.5
ECA236G3984 Erigeron canadensis HOM05D000006 ORTHO05D000286 4.9e-06 55.1 40 55.0


User provided reference genes

Program Settings