Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G5377 Trifolium pratense HOM05D001798 ORTHO05D005040 1.4e-60 236.1 123 100.0
Medtr4g128470 Medicago truncatula HOM05D001798 ORTHO05D005040 1.7e-45 186.0 124 81.5
Psat4g011600 Pisum sativum HOM05D001798 ORTHO05D005040 2.8e-40 168.7 122 76.2
Lj4g0012331 Lotus japonicus HOM05D001798 ORTHO05D005040 5.5e-36 154.5 120 70.8
Ca_21215_v3 Cicer arietinum L. HOM05D001798 ORTHO05D005040 2.1e-35 152.5 121 68.6
Phvul.003G146800 Phaseolus vulgaris HOM05D001798 ORTHO05D005040 2.1e-35 152.5 116 69.0
Glyma.13G095700 Glycine max HOM05D001798 ORTHO05D005040 1.3e-34 149.8 123 68.3
VMungo1215G0796 Vigna mungo HOM05D001798 ORTHO05D005040 1.9e-33 146.0 127 65.4
Glyma.17G064300 Glycine max HOM05D001798 ORTHO05D005040 5.6e-33 144.4 125 64.8
Lalb_Chr12g0199341 Lupinus albus HOM05D001798 ORTHO05D005040 9.3e-28 127.1 122 58.2
MD12G1161200 Malus domestica HOM05D001798 ORTHO05D005040 2.4e-23 112.5 114 61.4
Cpa.g.sc95.60 Carica papaya HOM05D001798 ORTHO05D005040 3.1e-23 112.1 117 57.3
CiPaw.07G191500 Carya illinoinensis HOM05D001798 ORTHO05D005040 1.5e-22 109.8 118 55.1
Atru.chr7.661 Acer truncatum HOM05D001798 ORTHO05D005040 2.6e-22 109.0 119 58.0
Prupe.1G087800 Prunus persica HOM05D001798 ORTHO05D005040 3.4e-22 108.6 115 61.7
Haze_19626 Corylus avellana HOM05D001798 ORTHO05D005040 1.0e-21 107.1 113 54.0
Cfa016621 Carpinus fangiana HOM05D001798 ORTHO05D005040 1.7e-21 106.3 113 55.8
Ciclev10009891m.g Citrus clementina HOM05D001798 ORTHO05D005040 3.8e-21 105.1 121 52.9
QL02p097578 Quercus lobata HOM05D001798 ORTHO05D005040 6.5e-21 104.4 125 51.2
Sabra18G0080900 Salix brachista HOM05D001798 ORTHO05D005040 6.5e-21 104.4 112 53.6
COL.COLO4_36848 Corchorus olitorius HOM05D001798 ORTHO05D005040 8.5e-21 104.0 116 54.3
FvH4_3g45900 Fragaria vesca HOM05D001798 ORTHO05D005040 8.5e-21 104.0 117 59.8
FvH4_4g09360 Fragaria vesca HOM05D001798 ORTHO05D005040 8.5e-21 104.0 117 58.1
MELO3C017469.2 Cucumis melo HOM05D001798 ORTHO05D005040 3.2e-20 102.1 113 53.1
QL02p097572 Quercus lobata HOM05D001798 ORTHO05D005040 5.5e-20 101.3 117 52.1
CsaV3_1G031530 Cucumis sativus L. HOM05D001798 ORTHO05D005040 7.2e-20 100.9 113 51.3
MD13G1257600 Malus domestica HOM05D001798 ORTHO05D005040 1.2e-19 100.1 115 54.8
MSTRG.26226 Avicennia marina HOM05D001798 ORTHO05D005040 2.1e-19 99.4 113 53.1
Duzib170G0014 Durio zibethinus HOM05D001798 ORTHO05D005040 2.1e-19 99.4 111 54.1
FAN22G0641 Fragaria x ananassa HOM05D001798 ORTHO05D005040 3.6e-19 98.6 117 58.1
Nn2g12701 Nelumbo nucifera HOM05D001798 ORTHO05D005040 3.6e-19 98.6 111 52.3
ClCG06G013270 Citrullus lanatus HOM05D001798 ORTHO05D005040 4.6e-19 98.2 112 52.7
Hma1.2p1_1646F.1_g295510 Hydrangea macrophylla HOM05D001798 ORTHO05D005040 4.6e-19 98.2 110 51.8
Manes.14G151300 Manihot esculenta HOM05D001798 ORTHO05D005040 4.6e-19 98.2 114 53.5
Hma1.2p1_2478F.1_g322950 Hydrangea macrophylla HOM05D001798 ORTHO05D005040 6.1e-19 97.8 110 51.8
RcHm_v2.0_Chr4g0402701 Rosa chinensis HOM05D001798 ORTHO05D005040 1.0e-18 97.1 119 56.3
Dinv41255 Davidia involucrata HOM05D001798 ORTHO05D004054 1.8e-18 96.3 114 52.6
Thecc.09G171700 Theobroma cacao HOM05D001798 ORTHO05D005040 3.0e-18 95.5 111 53.2
TWI34G0376 Tripterygium wilfordii HOM05D001798 ORTHO05D005040 3.0e-18 95.5 118 53.4
BcaB08g36104 Brassica carinata HOM05D001798 ORTHO05D005040 5.1e-18 94.7 117 48.7
Duzib150G1419 Durio zibethinus HOM05D001798 ORTHO05D005040 5.1e-18 94.7 109 54.1
Eucgr.C00167 Eucalyptus grandis HOM05D001798 ORTHO05D005040 5.1e-18 94.7 116 50.0
Gorai.004G100700 Gossypium raimondii HOM05D001798 ORTHO05D005040 6.7e-18 94.4 112 52.7
Potri.018G094100 Populus trichocarpa HOM05D001798 ORTHO05D005040 6.7e-18 94.4 109 50.5
RcHm_v2.0_Chr4g0402691 Rosa chinensis HOM05D001798 ORTHO05D005040 6.7e-18 94.4 119 55.5
SalBow6G3226 Salvia bowleyana HOM05D001798 ORTHO05D005040 6.7e-18 94.4 111 48.6
SalBow6G3242 Salvia bowleyana HOM05D001798 ORTHO05D005040 6.7e-18 94.4 111 48.6
SGA_v2.0_scaffold12G06063 Striga asiatica HOM05D001798 ORTHO05D005040 8.8e-18 94.0 113 50.4
QL12p025154 Quercus lobata HOM05D001798 ORTHO05D005040 1.1e-17 93.6 116 52.6
Gohir.A08G085900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 1.9e-17 92.8 110 51.8
Gohir.D08G094900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 1.9e-17 92.8 112 52.7
TWI34G1338 Tripterygium wilfordii HOM05D001798 ORTHO05D005040 1.9e-17 92.8 119 53.8
CSS0007301 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 3.3e-17 92.0 119 49.6
AT5G57510 Arabidopsis thaliana HOM05D001798 ORTHO05D005040 4.3e-17 91.7 119 48.7
MSTRG.19701 Avicennia marina HOM05D001798 ORTHO05D005040 4.3e-17 91.7 112 49.1
Manes.16G135500 Manihot esculenta HOM05D001798 ORTHO05D005040 7.4e-17 90.9 117 50.4
PGSC0003DMG400016261 Solanum tuberosum HOM05D001798 ORTHO05D005040 7.4e-17 90.9 127 48.8
Manes.03G004000 Manihot esculenta HOM05D001798 ORTHO05D005040 9.7e-17 90.5 112 49.1
THA.LOC104817796 Tarenaya hassleriana HOM05D001798 ORTHO05D005040 9.7e-17 90.5 115 52.2
THA.LOC104811795 Tarenaya hassleriana HOM05D001798 ORTHO05D005040 1.3e-16 90.1 123 48.8
SalBow1G2776 Salvia bowleyana HOM05D001798 ORTHO05D005040 1.7e-16 89.7 109 52.3
Sopen11g004390 Solanum pennellii HOM05D001798 ORTHO05D005040 2.2e-16 89.4 124 46.8
Aa31LG3G13380 Aethionema arabicum HOM05D001798 ORTHO05D005040 2.8e-16 89.0 118 51.7
Sed0020469 Sechium edule HOM05D001798 ORTHO05D005040 2.8e-16 89.0 116 48.3
BcaC03g14152 Brassica carinata HOM05D001798 ORTHO05D005040 3.7e-16 88.6 117 49.6
C02p14230 Brassica napus HOM05D001798 ORTHO05D005040 3.7e-16 88.6 117 49.6
BolC2t07547H Brassica oleracea HOM05D001798 ORTHO05D005040 3.7e-16 88.6 117 49.6
CARHR271290 Cardamine hirsuta HOM05D001798 ORTHO05D005040 3.7e-16 88.6 119 48.7
Sp6g19210 Schrenkiella parvula HOM05D001798 ORTHO05D005040 3.7e-16 88.6 113 49.6
Thhalv10015454m.g Eutrema salsugineum HOM05D001798 ORTHO05D005040 4.8e-16 88.2 118 48.3
MBI16_g35923_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 4.8e-16 88.2 116 50.0
AL8G33450 Arabidopsis lyrata HOM05D001798 ORTHO05D005040 6.3e-16 87.8 117 48.7
AL8G33510 Arabidopsis lyrata HOM05D001798 ORTHO05D005040 6.3e-16 87.8 117 48.7
FAN11G1762 Fragaria x ananassa HOM05D001798 ORTHO05D005040 6.3e-16 87.8 93 60.2
SGA_v2.0_scaffold301G47805 Striga asiatica HOM05D000485 ORTHO05D005040 6.3e-16 87.8 118 49.2
A02p08470 Brassica napus HOM05D001798 ORTHO05D005040 1.8e-15 86.3 112 50.9
BraA02t05918Z Brassica rapa HOM05D001798 ORTHO05D005040 1.8e-15 86.3 112 50.9
Haze_21738 Corylus avellana HOM05D001798 ORTHO05D005040 1.8e-15 86.3 113 50.4
MBI16_g35924_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 1.8e-15 86.3 116 50.0
MBI16_g35927_MAGBIO Magnolia biondii HOM05D000772 ORTHO05D005040 1.8e-15 86.3 113 51.3
Solyc11g008600.1 Solanum lycopersicum HOM05D001798 ORTHO05D005040 1.8e-15 86.3 125 48.0
SGA_v2.0_scaffold69G23263 Striga asiatica HOM05D001798 ORTHO05D005040 1.8e-15 86.3 111 49.5
CSS0022506 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 2.4e-15 85.9 120 48.3
FAN21G0239 Fragaria x ananassa HOM05D001798 ORTHO05D005040 2.4e-15 85.9 93 60.2
PGR142G4397 Punica granatum HOM05D001798 ORTHO05D005040 2.4e-15 85.9 125 48.8
CSS0005198 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 3.1e-15 85.5 120 50.0
CSS0011185 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 3.1e-15 85.5 120 50.0
FAN20G2332 Fragaria x ananassa HOM05D001798 ORTHO05D005040 3.1e-15 85.5 125 43.2
TAR383G0769 Trochodendron aralioides HOM05D001798 ORTHO05D005040 3.1e-15 85.5 114 49.1
CiPaw.08G019800 Carya illinoinensis HOM05D001798 ORTHO05D005040 4.1e-15 85.1 108 49.1
FAN27G0855 Fragaria x ananassa HOM05D001798 ORTHO05D005040 5.3e-15 84.7 125 42.4
Migut.J01450 Erythranthe guttata HOM05D001798 ORTHO05D005040 6.9e-15 84.3 109 47.7
FvH4_2g36750 Fragaria vesca HOM05D001798 ORTHO05D005040 9.1e-15 84.0 118 44.1
Peaxi162Scf00296g00124 Petunia axillaris HOM05D001798 ORTHO05D005040 9.1e-15 84.0 125 45.6
CSS0019887 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 1.2e-14 83.6 120 47.5
CAN.G321.14 Capsicum annuum HOM05D001798 ORTHO05D005040 1.2e-14 83.6 134 44.8
Gohir.D06G107900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 1.2e-14 83.6 118 45.8
BcaB05g22348 Brassica carinata HOM05D001798 ORTHO05D005040 1.5e-14 83.2 119 47.1
Cfa013271 Carpinus fangiana HOM05D001798 ORTHO05D005040 1.5e-14 83.2 116 46.6
Haze_21745 Corylus avellana HOM05D001798 ORTHO05D005040 2.0e-14 82.8 113 47.8
Haze_21742 Corylus avellana HOM05D001798 ORTHO05D005040 3.4e-14 82.0 118 48.3
Haze_21741 Corylus avellana HOM05D001798 ORTHO05D005040 4.5e-14 81.6 113 49.6
Duzib168G0008 Durio zibethinus HOM05D001798 ORTHO05D005040 4.5e-14 81.6 115 49.6
Lsat_1_v5_gn_8_67120 Lactuca sativa HOM05D001798 ORTHO05D005040 5.9e-14 81.3 145 42.1
Carub.0008s1801 Capsella rubella HOM05D001798 ORTHO05D005040 7.7e-14 80.9 113 48.7
HanXRQChr05g0137241 Helianthus annuus HOM05D001798 ORTHO05D005040 7.7e-14 80.9 143 42.0
RcHm_v2.0_Chr6g0305001 Rosa chinensis HOM05D001798 ORTHO05D005040 1.3e-13 80.1 118 43.2
Eucgr.C02286 Eucalyptus grandis HOM05D001798 ORTHO05D005040 1.7e-13 79.7 118 44.9
Migut.K00248 Erythranthe guttata HOM05D001798 ORTHO05D005040 2.9e-13 79.0 115 45.2
Sabra18G0014500 Salix brachista HOM05D000280 ORTHO05D006100 3.8e-13 78.6 127 46.5
Eucgr.C02285 Eucalyptus grandis HOM05D001798 ORTHO05D005040 5.0e-13 78.2 118 44.9
Duzib187G0913 Durio zibethinus HOM05D001798 ORTHO05D005040 8.5e-13 77.4 118 44.9
Gohir.A06G105500 Gossypium hirsutum HOM05D001798 ORTHO05D005040 8.5e-13 77.4 120 44.2
RcHm_v2.0_Chr1g0336341 Rosa chinensis HOM05D001798 ORTHO05D005040 1.1e-12 77.0 115 44.3
Sc01g0002270 Simmondsia chinensis HOM05D001798 ORTHO05D005040 1.1e-12 77.0 125 41.6
Prupe.1G460000 Prunus persica HOM05D001798 ORTHO05D005040 1.4e-12 76.6 125 42.4
Cfa013270 Carpinus fangiana HOM05D001798 ORTHO05D005040 1.9e-12 76.3 113 47.8
Potri.018G006800 Populus trichocarpa HOM05D001798 ORTHO05D005040 1.9e-12 76.3 129 45.0
CiPaw.08G037100 Carya illinoinensis HOM05D001798 ORTHO05D005040 3.2e-12 75.5 89 51.7
Gorai.010G122600 Gossypium raimondii HOM05D001798 ORTHO05D005040 3.2e-12 75.5 121 42.1
Aqoxy7G03082 Aquilegia oxysepala HOM05D001798 ORTHO05D005040 4.2e-12 75.1 120 45.0
Ciclev10010207m.g Citrus clementina HOM05D001798 ORTHO05D005040 4.2e-12 75.1 119 47.9
COL.COLO4_19032 Corchorus olitorius HOM05D001798 ORTHO05D005040 7.2e-12 74.3 117 46.2
Potri.006G273500 Populus trichocarpa HOM05D001798 ORTHO05D005040 7.2e-12 74.3 120 44.2
Potri.006G273566 Populus trichocarpa HOM05D001798 ORTHO05D005040 7.2e-12 74.3 120 44.2
Rhsim01G0006100 Rhododendron simsii HOM05D001798 ORTHO05D005040 9.4e-12 73.9 85 52.9
Thecc.09G007300 Theobroma cacao HOM05D001798 ORTHO05D005040 1.2e-11 73.6 71 56.3
Ciclev10010310m.g Citrus clementina HOM05D001798 ORTHO05D005040 1.6e-11 73.2 119 47.1
Sabra06G0212200 Salix brachista HOM05D001798 ORTHO05D005040 1.6e-11 73.2 116 44.0
ECA240G2061 Erigeron canadensis HOM05D001798 ORTHO05D005040 3.6e-11 72.0 129 35.7
FAN15G2712 Fragaria x ananassa HOM05D001798 ORTHO05D005040 3.6e-11 72.0 115 40.9
AUR62022665 Chenopodium quinoa HOM05D001798 ORTHO05D005040 4.7e-11 71.6 120 40.8
AUR62009071 Chenopodium quinoa HOM05D001798 ORTHO05D005040 1.4e-10 70.1 135 40.0
Sabra06G0211900 Salix brachista HOM05D001798 ORTHO05D005040 1.4e-10 70.1 117 42.7
Lsat_1_v5_gn_7_54461 Lactuca sativa HOM05D001798 ORTHO05D005040 1.8e-10 69.7 104 43.3
PSO349G0296 Papaver somniferum HOM05D001798 ORTHO05D005040 2.3e-10 69.3 123 39.8
AUR62020597 Chenopodium quinoa HOM05D001798 ORTHO05D005040 3.0e-10 68.9 134 38.8
ATR0580G067 Amborella trichopoda HOM05D001798 ORTHO05D005040 3.9e-10 68.6 110 42.7
CANSAT11G0905 Cannabis sativa HOM05D001798 ORTHO05D005040 3.9e-10 68.6 142 37.3
Cpa.g.sc23.17 Carica papaya HOM05D001798 ORTHO05D005040 3.9e-10 68.6 115 41.7
Atru.chr7.2645 Acer truncatum HOM05D001798 ORTHO05D005040 1.1e-09 67.0 128 42.2
Haze_21740 Corylus avellana HOM05D001798 ORTHO05D005040 1.5e-09 66.6 104 45.2
CiPaw.07G212400 Carya illinoinensis HOM05D001798 ORTHO05D005040 2.0e-09 66.2 108 43.5
PGSC0003DMG400026318 Solanum tuberosum HOM05D001798 ORTHO05D005040 2.0e-09 66.2 124 41.9
MD08G1128200 Malus domestica HOM05D001798 ORTHO05D005040 2.6e-09 65.9 128 39.8
MD15G1107700 Malus domestica HOM05D001798 ORTHO05D005040 3.3e-09 65.5 132 40.2
Nitab4.5_0004131g0060 Nicotiana tabacum HOM05D001798 ORTHO05D005040 4.4e-09 65.1 119 38.7
BcaC04g19961 Brassica carinata HOM05D001798 ORTHO05D005040 5.7e-09 64.7 82 46.3
BolC9t57787H Brassica oleracea HOM05D001798 ORTHO05D005040 5.7e-09 64.7 82 46.3
Ah.05g179040 Amaranthus hybridus HOM05D001798 ORTHO05D005040 8.2e-08 60.8 155 31.6
MBI16_g35928_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 8.2e-08 60.8 77 44.2
HanXRQChr09g0254491 Helianthus annuus HOM05D001798 ORTHO05D005040 1.1e-07 60.5 130 36.9
Ah.11g043870 Amaranthus hybridus HOM05D001798 ORTHO05D005040 2.4e-07 59.3 121 38.8
EL10Ac2g03758 Beta vulgaris HOM05D001798 ORTHO05D005040 3.1e-07 58.9 152 34.9
Nitab4.5_0004131g0070 Nicotiana tabacum HOM05D001798 ORTHO05D005040 7.0e-07 57.8 129 38.8
Sed0003670 Sechium edule HOM05D001798 ORTHO05D022392 9.1e-07 57.4 40 72.5
ClCG10G000980 Citrullus lanatus HOM05D001798 ORTHO05D022392 2.0e-06 56.2 33 81.8
MELO3C013791.2 Cucumis melo HOM05D001798 ORTHO05D022392 4.5e-06 55.1 33 78.8
Nn2g12703 Nelumbo nucifera HOM05D001798 ORTHO05D005040 7.7e-06 54.3 112 35.7


User provided reference genes

Program Settings