Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G5357 Trifolium pratense HOM05D000519 ORTHO05D000959 3.8e-55 218.0 115 100.0
TPR.G5328 Trifolium pratense HOM05D000519 ORTHO05D000959 1.5e-43 179.5 115 81.7
TPR.G5331 Trifolium pratense HOM05D000519 ORTHO05D000959 2.9e-39 165.2 110 80.0
Medtr0013s0070 Medicago truncatula HOM05D000519 ORTHO05D000959 5.7e-27 124.4 112 62.5
TPR.G354 Trifolium pratense HOM05D000519 ORTHO05D000959 9.6e-27 123.6 110 66.4
Medtr2g028080 Medicago truncatula HOM05D000519 ORTHO05D000959 2.8e-26 122.1 111 61.3
Medtr0437s0020 Medicago truncatula HOM05D000519 ORTHO05D000959 8.2e-26 120.6 112 58.9
Medtr5g091330 Medicago truncatula HOM05D000519 ORTHO05D000959 1.2e-24 116.7 114 56.1
Medtr0013s0060 Medicago truncatula HOM05D000519 ORTHO05D000959 2.0e-24 115.9 112 59.8
Medtr2g028520 Medicago truncatula HOM05D000519 ORTHO05D000959 7.6e-24 114.0 114 58.8
Medtr6g022420 Medicago truncatula HOM05D000519 ORTHO05D000959 1.1e-22 110.2 112 52.7
Medtr8g012950 Medicago truncatula HOM05D000519 ORTHO05D000959 1.4e-22 109.8 113 58.4
Medtr5g091280 Medicago truncatula HOM05D000519 ORTHO05D000959 7.9e-21 104.0 116 53.4
Medtr5g091360 Medicago truncatula HOM05D000519 ORTHO05D000959 1.8e-20 102.8 115 51.3
Psat1g189040 Pisum sativum HOM05D000519 ORTHO05D000959 2.3e-20 102.4 116 49.1
Medtr6g078440 Medicago truncatula HOM05D000519 ORTHO05D000959 8.7e-20 100.5 83 61.4
Medtr5g091260 Medicago truncatula HOM05D000519 ORTHO05D000959 1.5e-19 99.8 116 51.7
Medtr6g022430 Medicago truncatula HOM05D000519 ORTHO05D000959 1.5e-19 99.8 109 50.5
TPR.G19994 Trifolium pratense HOM05D000519 ORTHO05D000959 4.5e-16 88.2 103 53.4
TPR.G38006 Trifolium pratense HOM05D000519 ORTHO05D000959 4.5e-16 88.2 122 44.3
Ca_21040_v3 Cicer arietinum L. HOM05D000519 ORTHO05D000959 1.3e-15 86.7 117 49.6
Phvul.003G084300 Phaseolus vulgaris HOM05D000519 ORTHO05D000959 1.3e-15 86.7 114 50.0
Medtr5g091520 Medicago truncatula HOM05D000519 ORTHO05D000959 1.7e-15 86.3 100 50.0
Medtr4g017620 Medicago truncatula HOM05D000519 ORTHO05D000959 2.9e-15 85.5 114 49.1
Medtr8g079410 Medicago truncatula HOM05D000519 ORTHO05D000959 3.8e-15 85.1 119 48.7
Medtr4g133540 Medicago truncatula HOM05D000519 ORTHO05D000959 6.5e-15 84.3 112 50.0
Psat7g244200 Pisum sativum HOM05D000519 ORTHO05D000959 1.9e-14 82.8 103 49.5
Medtr4g040310 Medicago truncatula HOM05D000519 ORTHO05D000959 3.2e-14 82.0 119 48.7
Lalb_Chr15g0088031 Lupinus albus HOM05D000519 ORTHO05D000959 5.5e-14 81.3 115 45.2
VMungo1215G1198 Vigna mungo HOM05D000519 ORTHO05D000959 2.7e-13 79.0 108 49.1
Psat4g004160 Pisum sativum HOM05D000519 ORTHO05D000959 6.1e-13 77.8 101 52.5
TPR.G37998 Trifolium pratense HOM05D000519 ORTHO05D000959 6.1e-13 77.8 120 43.3
TPR.G5945 Trifolium pratense HOM05D004898 ORTHO05D005574 1.8e-12 76.3 91 53.8
Medtr2g076800 Medicago truncatula HOM05D000519 ORTHO05D000959 2.3e-12 75.9 104 48.1
Psat4g004120 Pisum sativum HOM05D000519 ORTHO05D000959 5.1e-12 74.7 120 48.3
Medtr4g095630 Medicago truncatula HOM05D000519 ORTHO05D000959 6.7e-12 74.3 115 43.5
TPR.G35897 Trifolium pratense HOM05D000519 ORTHO05D000959 6.7e-12 74.3 115 44.3
Psat7g244080 Pisum sativum HOM05D000519 ORTHO05D000959 8.8e-12 73.9 108 44.4
TPR.G945 Trifolium pratense HOM05D000519 ORTHO05D000959 8.8e-12 73.9 103 43.7
Medtr2g076740 Medicago truncatula HOM05D000519 ORTHO05D000959 2.0e-11 72.8 105 49.5
Medtr0219s0010 Medicago truncatula HOM05D000519 ORTHO05D000959 4.3e-11 71.6 92 48.9
Psat4g004080 Pisum sativum HOM05D000519 ORTHO05D000959 4.3e-11 71.6 119 47.1
AL8G10420 Arabidopsis lyrata HOM05D000519 ORTHO05D000959 1.3e-10 70.1 97 48.5
Medtr2g103740 Medicago truncatula HOM05D000519 ORTHO05D000959 1.3e-10 70.1 109 45.0
CiPaw.09G103500 Carya illinoinensis HOM05D000519 ORTHO05D000959 1.7e-10 69.7 115 40.0
Cfa000088 Carpinus fangiana HOM05D000519 ORTHO05D000959 2.8e-10 68.9 120 43.3
Ca_21039_v3 Cicer arietinum L. HOM05D000519 ORTHO05D000959 3.7e-10 68.6 117 41.9
Glyma.09G010900 Glycine max HOM05D000519 ORTHO05D000959 4.8e-10 68.2 117 40.2
Glyma.04G096400 Glycine max HOM05D000519 ORTHO05D000959 6.3e-10 67.8 117 40.2
Glyma.19G206500 Glycine max HOM05D000519 ORTHO05D000959 6.3e-10 67.8 117 40.2
Glyma.09G110600 Glycine max HOM05D000519 ORTHO05D000959 8.2e-10 67.4 101 42.6
Lj3g0000523 Lotus japonicus HOM05D000519 ORTHO05D000959 8.2e-10 67.4 114 44.7
Medtr5g098550 Medicago truncatula HOM05D000519 ORTHO05D000959 1.1e-09 67.0 112 42.0
Aa31sc118G120 Aethionema arabicum HOM05D000519 ORTHO05D000959 1.4e-09 66.6 106 43.4
Glyma.11G064200 Glycine max HOM05D000519 ORTHO05D000959 1.4e-09 66.6 117 40.2
Haze_06945 Corylus avellana HOM05D000519 ORTHO05D000959 1.8e-09 66.2 103 48.5
Psat7g244120 Pisum sativum HOM05D000519 ORTHO05D000959 2.4e-09 65.9 92 46.7
Ciclev10009506m.g Citrus clementina HOM05D000519 ORTHO05D000959 3.1e-09 65.5 113 41.6
Sc17g0007820 Simmondsia chinensis HOM05D000519 ORTHO05D000959 3.1e-09 65.5 103 42.7
AT5G47550 Arabidopsis thaliana HOM05D000519 ORTHO05D000959 5.3e-09 64.7 100 46.0
CARHR173800 Cardamine hirsuta HOM05D000519 ORTHO05D000959 5.3e-09 64.7 97 46.4
TPR.G35340 Trifolium pratense HOM05D000519 ORTHO05D000959 5.3e-09 64.7 114 42.1
Carub.0008s0023 Capsella rubella HOM05D000519 ORTHO05D000959 6.9e-09 64.3 80 46.2
Glyma.07G266000 Glycine max HOM05D000519 ORTHO05D000959 6.9e-09 64.3 101 50.5
Lalb_Chr18g0057041 Lupinus albus HOM05D000519 ORTHO05D000959 9.1e-09 63.9 113 42.5
RcHm_v2.0_Chr5g0001051 Rosa chinensis HOM05D000519 ORTHO05D000959 9.1e-09 63.9 98 43.9
Glyma.15G115300 Glycine max HOM05D000519 ORTHO05D000959 1.2e-08 63.5 100 39.0
Peaxi162Scf00924g00021 Petunia axillaris HOM05D000519 ORTHO05D000959 1.5e-08 63.2 81 45.7
Haze_09252 Corylus avellana HOM05D000519 ORTHO05D000959 2.6e-08 62.4 105 40.0
Psat4g003920 Pisum sativum HOM05D000519 ORTHO05D000959 2.6e-08 62.4 103 41.7
Sc24g0000290 Simmondsia chinensis HOM05D000519 ORTHO05D000959 2.6e-08 62.4 108 41.7
Nn5g27758 Nelumbo nucifera HOM05D000519 ORTHO05D000959 3.4e-08 62.0 122 41.0
Nitab4.5_0001109g0080 Nicotiana tabacum HOM05D000519 ORTHO05D000959 3.4e-08 62.0 106 41.5
Ca_00730_v3 Cicer arietinum L. HOM05D000519 ORTHO05D000959 4.5e-08 61.6 98 44.9
Medtr2g026040 Medicago truncatula HOM05D000519 ORTHO05D000959 4.5e-08 61.6 96 44.8
Ca_21013_v3 Cicer arietinum L. HOM05D000570 ORTHO05D001174 7.7e-08 60.8 69 47.8
Gohir.A06G153800 Gossypium hirsutum HOM05D000519 ORTHO05D000959 7.7e-08 60.8 91 46.2
Nn1g07421 Nelumbo nucifera HOM05D000519 ORTHO05D000959 7.7e-08 60.8 91 45.1
TPR.G30458 Trifolium pratense HOM05D000519 ORTHO05D000959 7.7e-08 60.8 98 44.9
TPR.G8223 Trifolium pratense HOM05D000519 ORTHO05D000959 7.7e-08 60.8 67 61.2
Nitab4.5_0004646g0100 Nicotiana tabacum HOM05D000519 ORTHO05D000959 1.0e-07 60.5 115 38.3
arahy.Tifrunner.gnm1.ann1.QX2NVJ Arachis hypogaea HOM05D000519 ORTHO05D000959 1.3e-07 60.1 79 43.0
Duzib160G0143 Durio zibethinus HOM05D000519 ORTHO05D000959 1.3e-07 60.1 115 40.0
GSVIVG01003320001 Vitis vinifera HOM05D000519 ORTHO05D000959 1.3e-07 60.1 112 41.1
AL4G28250 Arabidopsis lyrata HOM05D000519 ORTHO05D000959 1.7e-07 59.7 108 38.9
Thhalv10017424m.g Eutrema salsugineum HOM05D000519 ORTHO05D000959 2.9e-07 58.9 114 36.8
Gohir.D06G160800 Gossypium hirsutum HOM05D000519 ORTHO05D000959 2.9e-07 58.9 114 39.5
Gorai.010G187700 Gossypium raimondii HOM05D000519 ORTHO05D000959 2.9e-07 58.9 114 39.5
Manes.09G039400 Manihot esculenta HOM05D000519 ORTHO05D000959 2.9e-07 58.9 109 38.5
Psat1g175600 Pisum sativum HOM05D000519 ORTHO05D000959 2.9e-07 58.9 112 39.3
Psat4g003880 Pisum sativum HOM05D000519 ORTHO05D000959 2.9e-07 58.9 103 39.8
RcHm_v2.0_Chr3g0455001 Rosa chinensis HOM05D000519 ORTHO05D000959 2.9e-07 58.9 96 44.8
TPR.G21870 Trifolium pratense HOM05D000519 ORTHO05D000959 2.9e-07 58.9 114 40.4
TPR.G9095 Trifolium pratense HOM05D000519 ORTHO05D000959 2.9e-07 58.9 114 39.5
TWI63G0767 Tripterygium wilfordii HOM05D000519 ORTHO05D000959 2.9e-07 58.9 112 37.5
TAR629G0911 Trochodendron aralioides HOM05D000519 ORTHO05D000959 2.9e-07 58.9 119 39.5
BcaB07g30638 Brassica carinata HOM05D000519 ORTHO05D000959 3.8e-07 58.5 112 39.3
Lalb_Chr20g0119301 Lupinus albus HOM05D000519 ORTHO05D000959 3.8e-07 58.5 112 41.1
ClCG01G010410 Citrullus lanatus HOM05D000519 ORTHO05D000959 5.0e-07 58.2 106 34.0
MD05G1358700 Malus domestica HOM05D000519 ORTHO05D000959 5.0e-07 58.2 114 36.0
Sp2g12280 Schrenkiella parvula HOM05D000519 ORTHO05D000959 5.0e-07 58.2 112 41.1
Lsat_1_v5_gn_1_114780 Lactuca sativa HOM05D000519 ORTHO05D000959 6.5e-07 57.8 100 42.0
TPR.G33246 Trifolium pratense HOM05D000519 ORTHO05D000959 6.5e-07 57.8 94 42.6
TPR.G5977 Trifolium pratense HOM05D000519 ORTHO05D000959 6.5e-07 57.8 112 40.2
arahy.Tifrunner.gnm1.ann1.L1FG9J Arachis hypogaea HOM05D000519 ORTHO05D000959 8.5e-07 57.4 107 40.2
Hma1.2p1_0657F.1_g197050 Hydrangea macrophylla HOM05D000519 ORTHO05D000959 8.5e-07 57.4 112 42.0
MD05G1358900 Malus domestica HOM05D000519 ORTHO05D000959 8.5e-07 57.4 92 43.5
Oeu047064.1 Olea europaea HOM05D000519 ORTHO05D000959 8.5e-07 57.4 113 38.1
CAN.G1263.20 Capsicum annuum HOM05D000519 ORTHO05D000959 1.1e-06 57.0 110 38.2
Cfa019521 Carpinus fangiana HOM05D000519 ORTHO05D000959 1.1e-06 57.0 105 40.0
CsaV3_1G017140 Cucumis sativus L. HOM05D000519 ORTHO05D000959 1.1e-06 57.0 73 41.1
Duzib192G0996 Durio zibethinus HOM05D000519 ORTHO05D000959 1.1e-06 57.0 109 42.2
Carub.0004s1417 Capsella rubella HOM05D000519 ORTHO05D000959 1.4e-06 56.6 107 39.3
Gorai.010G187300 Gossypium raimondii HOM05D000519 ORTHO05D000959 1.4e-06 56.6 85 44.7
HanXRQChr04g0096491 Helianthus annuus HOM05D000519 ORTHO05D000959 1.4e-06 56.6 108 34.3
QL05p069227 Quercus lobata HOM05D000519 ORTHO05D000959 1.4e-06 56.6 123 35.0
arahy.Tifrunner.gnm1.ann1.WI67VP Arachis hypogaea HOM05D000519 ORTHO05D000959 1.9e-06 56.2 110 37.3
Ciclev10002632m.g Citrus clementina HOM05D000519 ORTHO05D000959 1.9e-06 56.2 85 44.7
Gohir.A06G154000 Gossypium hirsutum HOM05D000519 ORTHO05D000959 1.9e-06 56.2 115 38.3
Psat2g010240 Pisum sativum HOM05D000519 ORTHO05D000959 1.9e-06 56.2 110 39.1
Thecc.06G234700 Theobroma cacao HOM05D000519 ORTHO05D000959 1.9e-06 56.2 106 40.6
TPR.G5936 Trifolium pratense HOM05D000919 ORTHO05D001187 1.9e-06 56.2 100 42.0
Ciclev10003263m.g Citrus clementina HOM05D000519 ORTHO05D000959 2.5e-06 55.8 103 38.8
Gohir.A06G154100 Gossypium hirsutum HOM05D000519 ORTHO05D000959 2.5e-06 55.8 115 40.0
Nitab4.5_0001735g0110 Nicotiana tabacum HOM05D000519 ORTHO05D000959 2.5e-06 55.8 122 39.3
Peaxi162Scf00924g00023 Petunia axillaris HOM05D000519 ORTHO05D000959 2.5e-06 55.8 113 33.6
Peaxi162Scf00924g00031 Petunia axillaris HOM05D000519 ORTHO05D000959 2.5e-06 55.8 113 33.6
Ciclev10004025m.g Citrus clementina HOM05D000519 ORTHO05D000959 3.2e-06 55.5 79 44.3
Ciclev10017209m.g Citrus clementina HOM05D000519 ORTHO05D000959 3.2e-06 55.5 109 38.5
Thhalv10001076m.g Eutrema salsugineum HOM05D000519 ORTHO05D000959 3.2e-06 55.5 111 37.8
FAN21G0953 Fragaria x ananassa HOM05D000919 ORTHO05D001187 3.2e-06 55.5 95 42.1
Gohir.D06G160600 Gossypium hirsutum HOM05D000519 ORTHO05D000959 3.2e-06 55.5 85 43.5
Nn3g21163 Nelumbo nucifera HOM05D000519 ORTHO05D000959 3.2e-06 55.5 79 43.0
QL05p069213 Quercus lobata HOM05D000519 ORTHO05D000959 3.2e-06 55.5 124 35.5
TPR.G21872 Trifolium pratense HOM05D000519 ORTHO05D000959 3.2e-06 55.5 114 37.7
Lsat_1_v5_gn_1_114741 Lactuca sativa HOM05D000519 ORTHO05D000959 4.2e-06 55.1 100 39.0
Nn3g21162 Nelumbo nucifera HOM05D000519 ORTHO05D000959 4.2e-06 55.1 74 45.9
Prupe.4G008900 Prunus persica HOM05D000519 ORTHO05D000959 4.2e-06 55.1 121 37.2
Sc17g0007810 Simmondsia chinensis HOM05D000519 ORTHO05D000959 4.2e-06 55.1 113 37.2
Peaxi162Scf00924g00035 Petunia axillaris HOM05D000519 ORTHO05D000959 5.5e-06 54.7 113 33.6
Psat1g199880 Pisum sativum HOM05D000519 ORTHO05D000959 5.5e-06 54.7 111 41.4
Solyc04g014780.1 Solanum lycopersicum HOM05D000519 ORTHO05D000959 5.5e-06 54.7 110 38.2
BcaB07g30771 Brassica carinata HOM05D000519 ORTHO05D000959 7.2e-06 54.3 108 37.0
BcaC06g31374 Brassica carinata HOM05D000519 ORTHO05D000959 7.2e-06 54.3 112 38.4
Ciclev10003705m.g Citrus clementina HOM05D000519 ORTHO05D000959 7.2e-06 54.3 79 41.8
Gohir.A06G153900 Gossypium hirsutum HOM05D000519 ORTHO05D000959 7.2e-06 54.3 93 41.9
Peaxi162Scf00924g00032 Petunia axillaris HOM05D000519 ORTHO05D000959 7.2e-06 54.3 113 33.6
Peaxi162Scf00924g00034 Petunia axillaris HOM05D000519 ORTHO05D000959 7.2e-06 54.3 113 32.7
A09p24850 Brassica napus HOM05D000519 ORTHO05D000959 9.4e-06 53.9 112 39.3
COL.COLO4_31900 Corchorus olitorius HOM05D000919 ORTHO05D001187 9.4e-06 53.9 93 44.1
Gohir.D06G160700 Gossypium hirsutum HOM05D000519 ORTHO05D000959 9.4e-06 53.9 108 37.0
Gorai.010G187500 Gossypium raimondii HOM05D000519 ORTHO05D000959 9.4e-06 53.9 108 37.0
Nn1g03277 Nelumbo nucifera HOM05D000519 ORTHO05D000959 9.4e-06 53.9 102 39.2
Nn5g27759 Nelumbo nucifera HOM05D000519 ORTHO05D000959 9.4e-06 53.9 104 31.7
Rhsim13G0144500 Rhododendron simsii HOM05D000519 ORTHO05D000959 9.4e-06 53.9 119 33.6


User provided reference genes

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