Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G5349 Trifolium pratense HOM05D005241 ORTHO05D005862 2.7e-213 745.0 355 100.0
Medtr4g129200 Medicago truncatula HOM05D005241 ORTHO05D005862 9.1e-193 676.8 356 91.6
Ca_21190_v3 Cicer arietinum L. HOM05D005241 ORTHO05D005862 3.1e-185 651.7 357 85.7
Glyma.13G092800 Glycine max HOM05D005241 ORTHO05D005862 5.0e-183 644.4 359 84.4
Lalb_Chr07g0180161 Lupinus albus HOM05D005241 ORTHO05D005862 1.3e-178 629.8 361 80.9
Psat4g010800 Pisum sativum HOM05D005241 ORTHO05D005862 5.0e-175 617.8 347 85.9
arahy.Tifrunner.gnm1.ann1.RWXM46 Arachis hypogaea HOM05D005241 ORTHO05D005862 8.6e-175 617.1 354 81.1
Phvul.003G150200 Phaseolus vulgaris HOM05D005241 ORTHO05D005862 7.3e-174 614.0 360 81.1
Lj4g0023001 Lotus japonicus HOM05D005241 ORTHO05D005862 2.1e-173 612.5 371 80.3
arahy.Tifrunner.gnm1.ann1.4YP8RP Arachis hypogaea HOM05D005241 ORTHO05D005862 4.6e-168 594.7 342 80.1
VMungo1215G3242 Vigna mungo HOM05D005241 ORTHO05D005862 5.0e-167 591.3 340 82.4
Lalb_Chr07g0180171 Lupinus albus HOM05D005241 ORTHO05D005862 2.7e-160 568.9 314 80.9
Glyma.17G067600 Glycine max HOM05D005241 ORTHO05D005862 4.7e-157 558.1 353 74.5
Thecc.09G163700 Theobroma cacao HOM05D005241 ORTHO05D005862 2.0e-155 552.7 335 77.0
Atru.chr7.554 Acer truncatum HOM05D005241 ORTHO05D005862 2.6e-155 552.4 346 74.0
Phvul.003G150000 Phaseolus vulgaris HOM05D005241 ORTHO05D005862 2.6e-155 552.4 314 80.3
Lj4g0014860 Lotus japonicus HOM05D005241 ORTHO05D005862 5.8e-155 551.2 311 81.0
COL.COLO4_16080 Corchorus olitorius HOM05D005241 ORTHO05D005862 3.7e-154 548.5 323 77.7
Psat4g010840 Pisum sativum HOM05D005241 ORTHO05D005862 1.9e-153 546.2 320 78.1
CiPaw.07G187700 Carya illinoinensis HOM05D005241 ORTHO05D005862 3.2e-153 545.4 323 77.4
Dinv41292 Davidia involucrata HOM05D005241 ORTHO05D005862 3.2e-153 545.4 314 78.7
Ciclev10008429m.g Citrus clementina HOM05D005241 ORTHO05D005862 4.1e-153 545.0 316 79.4
Medtr4g129180 Medicago truncatula HOM05D005241 ORTHO05D005862 1.6e-152 543.1 334 74.6
RcHm_v2.0_Chr4g0404611 Rosa chinensis HOM05D005241 ORTHO05D005862 4.6e-152 541.6 317 77.3
TAR629G1464 Trochodendron aralioides HOM05D005241 ORTHO05D005862 6.0e-152 541.2 333 76.0
MD13G1261500 Malus domestica HOM05D005241 ORTHO05D005862 1.0e-151 540.4 316 76.9
PGR102G1178 Punica granatum HOM05D005241 ORTHO05D005862 3.9e-151 538.5 313 76.7
Oeu043521.1 Olea europaea HOM05D005241 ORTHO05D005862 6.6e-151 537.7 313 77.0
FAN07G2217 Fragaria x ananassa HOM05D005241 ORTHO05D005862 8.6e-151 537.3 315 76.8
Gohir.A05G345818 Gossypium hirsutum HOM05D005241 ORTHO05D005862 1.1e-150 537.0 322 77.0
TWI34G1734 Tripterygium wilfordii HOM05D005241 ORTHO05D005862 1.1e-150 537.0 317 76.3
FAN17G0752 Fragaria x ananassa HOM05D005241 ORTHO05D005862 1.9e-150 536.2 315 76.5
CSS0029475 Camellia sinensis var. sinensis HOM05D005241 ORTHO05D005862 3.3e-150 535.4 309 78.0
Haze_22151 Corylus avellana HOM05D005241 ORTHO05D005862 5.6e-150 534.6 336 74.7
FvH4_4g09810 Fragaria vesca HOM05D005241 ORTHO05D005862 5.6e-150 534.6 315 76.8
FAN12G0682 Fragaria x ananassa HOM05D005241 ORTHO05D005862 5.6e-150 534.6 315 76.8
QL02p096102 Quercus lobata HOM05D005241 ORTHO05D005862 5.6e-150 534.6 325 76.6
TWI34G0564 Tripterygium wilfordii HOM05D005241 ORTHO05D005862 7.3e-150 534.3 317 76.0
Manes.06G028800 Manihot esculenta HOM05D005241 ORTHO05D005862 1.6e-149 533.1 317 76.3
MSTRG.19688 Avicennia marina HOM05D005241 ORTHO05D005862 2.1e-149 532.7 313 77.0
Gorai.012G095700 Gossypium raimondii HOM05D005241 ORTHO05D005862 2.1e-149 532.7 316 78.2
SalBow6G2881 Salvia bowleyana HOM05D005241 ORTHO05D005862 2.1e-149 532.7 311 77.2
Actinidia24021 Actinidia chinensis HOM05D005241 ORTHO05D005862 3.6e-149 531.9 345 70.7
Gohir.D06G047501 Gossypium hirsutum HOM05D005241 ORTHO05D005862 3.6e-149 531.9 316 76.9
Thecc.09G163500 Theobroma cacao HOM05D005241 ORTHO05D005862 6.2e-149 531.2 313 76.7
Duzib150G1634 Durio zibethinus HOM05D005241 ORTHO05D005862 1.4e-148 530.0 328 74.7
COL.COLO4_16078 Corchorus olitorius HOM05D005241 ORTHO05D005862 2.4e-148 529.3 308 78.6
Dinv42767 Davidia involucrata HOM05D005241 ORTHO05D005862 2.4e-148 529.3 314 78.0
Dinv43336 Davidia involucrata HOM05D005241 ORTHO05D005862 2.4e-148 529.3 314 78.0
Gohir.D04G085700 Gossypium hirsutum HOM05D005241 ORTHO05D005862 2.4e-148 529.3 316 77.5
Sopen12g007320 Solanum pennellii HOM05D005241 ORTHO05D005862 3.1e-148 528.9 313 76.7
Solyc12g014440.2 Solanum lycopersicum HOM05D005241 ORTHO05D005862 6.8e-148 527.7 327 74.0
THA.LOC104813533 Tarenaya hassleriana HOM05D005241 ORTHO05D005862 1.5e-147 526.6 324 73.1
Gohir.A06G047300 Gossypium hirsutum HOM05D005241 ORTHO05D005862 2.0e-147 526.2 316 75.9
SGA_v2.0_scaffold66G22503 Striga asiatica HOM05D005241 ORTHO05D005862 2.0e-147 526.2 314 75.5
Gorai.010G053100 Gossypium raimondii HOM05D005241 ORTHO05D005862 4.4e-147 525.0 317 76.7
Potri.018G097100 Populus trichocarpa HOM05D005241 ORTHO05D005862 4.4e-147 525.0 310 76.1
Eucgr.C02440 Eucalyptus grandis HOM05D005241 ORTHO05D005862 7.6e-147 524.2 312 74.7
CANSAT11G2449 Cannabis sativa HOM05D005241 ORTHO05D005862 2.2e-146 522.7 340 70.3
Lj9A730T54 Lonicera japonica HOM05D005241 ORTHO05D005862 2.9e-146 522.3 305 77.4
SalBow6G2671 Salvia bowleyana HOM05D005241 ORTHO05D005862 2.9e-146 522.3 305 77.0
Lsat_1_v5_gn_8_65460 Lactuca sativa HOM05D005241 ORTHO05D005862 7.1e-145 517.7 312 74.4
unitig_0.g567 Utricularia gibba HOM05D005241 ORTHO05D005862 9.2e-145 517.3 311 74.3
Nn7g37052 Nelumbo nucifera HOM05D005241 ORTHO05D005862 1.2e-144 516.9 322 73.3
ATR0796G313 Amborella trichopoda HOM05D005241 ORTHO05D005862 1.6e-144 516.5 306 75.8
Glyma.13G092900 Glycine max HOM05D005241 ORTHO05D005862 1.6e-144 516.5 319 76.8
CsaV3_1G029530 Cucumis sativus L. HOM05D005241 ORTHO05D005862 2.1e-144 516.2 314 73.9
PSO135G0092 Papaver somniferum HOM05D005241 ORTHO05D005862 2.1e-144 516.2 315 73.7
HanXRQChr06g0178861 Helianthus annuus HOM05D005241 ORTHO05D005862 1.0e-143 513.8 312 74.4
vmacro13085 Vaccinium macrocarpon HOM05D005241 ORTHO05D005862 1.0e-143 513.8 316 72.5
Cc06_g13790 Coffea canephora HOM05D005241 ORTHO05D005862 3.0e-143 512.3 306 77.1
AT5G57700 Arabidopsis thaliana HOM05D005241 ORTHO05D005862 8.7e-143 510.8 309 75.7
MBI18_g28946_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 1.1e-142 510.4 312 74.4
PSO384G1775 Papaver somniferum HOM05D005241 ORTHO05D005862 1.1e-142 510.4 357 66.9
BolC3t13925H Brassica oleracea HOM05D005241 ORTHO05D005862 5.6e-142 508.1 309 75.7
Sabra18G0084300 Salix brachista HOM05D005241 ORTHO05D005862 5.6e-142 508.1 306 75.2
AL8G33730 Arabidopsis lyrata HOM05D005241 ORTHO05D005862 7.3e-142 507.7 309 75.1
PSO135G0726 Papaver somniferum HOM05D005241 ORTHO05D005862 9.6e-142 507.3 310 73.2
A03p12620 Brassica napus HOM05D005241 ORTHO05D005862 1.6e-141 506.5 309 75.7
DCAR_014714 Daucus carota HOM05D005241 ORTHO05D005862 2.1e-141 506.1 350 67.7
PSO135G0552 Papaver somniferum HOM05D005241 ORTHO05D005862 2.8e-141 505.8 310 72.9
BraA03t10577Z Brassica rapa HOM05D005241 ORTHO05D005862 6.2e-141 504.6 309 75.7
CDE10G0441 Ceratophyllum demersum HOM05D005241 ORTHO05D005862 6.2e-141 504.6 323 70.6
ClCG06G012960 Citrullus lanatus HOM05D005241 ORTHO05D005862 6.2e-141 504.6 322 72.0
Rhsim01G0009500 Rhododendron simsii HOM05D005241 ORTHO05D005862 6.2e-141 504.6 338 69.8
Aqoxy4G03021 Aquilegia oxysepala HOM05D005241 ORTHO05D005862 1.1e-140 503.8 307 73.9
Sp6g19390 Schrenkiella parvula HOM05D005241 ORTHO05D005862 1.4e-140 503.4 309 74.4
CARHR271450 Cardamine hirsuta HOM05D005241 ORTHO05D005862 1.8e-140 503.1 308 74.7
PSO384G2580 Papaver somniferum HOM05D005241 ORTHO05D005862 1.8e-140 503.1 310 72.9
Thhalv10013983m.g Eutrema salsugineum HOM05D005241 ORTHO05D005862 3.1e-140 502.3 309 74.8
ECA236G3445 Erigeron canadensis HOM05D005241 ORTHO05D005862 4.0e-140 501.9 311 72.0
C03p14830 Brassica napus HOM05D005241 ORTHO05D005862 5.3e-140 501.5 309 75.1
Hund09015 Selenicereus undatus HOM05D005241 ORTHO05D005862 1.5e-139 500.0 311 72.3
Aa31LG3G13540 Aethionema arabicum HOM05D005241 ORTHO05D005862 2.4e-137 492.7 307 73.3
Os07g0516000 Oryza sativa ssp. japonica HOM05D005241 ORTHO05D005862 2.4e-137 492.7 310 72.6
HPP92_013485 Vanilla planifolia HOM05D005241 ORTHO05D005862 4.6e-136 488.4 323 70.9
AUR62040288 Chenopodium quinoa HOM05D005241 ORTHO05D005862 4.0e-132 475.3 302 73.5
EL10Ac8g18255 Beta vulgaris HOM05D005241 ORTHO05D005862 5.8e-131 471.5 302 71.9
SEGI_10163 Sequoiadendron giganteum HOM05D005241 ORTHO05D005862 3.8e-130 468.8 309 69.9
Peaxi162Scf00078g00547 Petunia axillaris HOM05D005241 ORTHO05D005862 4.9e-130 468.4 316 69.6
Os07g0516050 Oryza sativa ssp. japonica HOM05D005241 ORTHO05D005862 6.4e-130 468.0 308 68.2
Nitab4.5_0000168g0090 Nicotiana tabacum HOM05D005241 ORTHO05D005862 5.3e-124 448.4 313 68.4
Nitab4.5_0006743g0030 Nicotiana tabacum HOM05D005241 ORTHO05D005862 6.9e-124 448.0 314 68.5
Peaxi162Scf00339g00098 Petunia axillaris HOM05D005241 ORTHO05D005862 1.3e-122 443.7 317 68.1
Mapoly0080s0044 Marchantia polymorpha HOM05D005241 ORTHO05D005862 1.6e-120 436.8 313 62.6
HPP92_026039 Vanilla planifolia HOM05D005241 ORTHO05D005862 3.5e-120 435.6 323 65.0
SMO351G0057 Selaginella moellendorffii HOM05D005241 ORTHO05D005862 8.7e-119 431.0 306 64.1
Sc08g0005390 Simmondsia chinensis HOM05D005241 ORTHO05D005862 1.1e-118 430.6 309 67.0
Hma1.2p1_0921F.1_g236680 Hydrangea macrophylla HOM05D005241 ORTHO05D005862 2.8e-117 426.0 341 61.3
Hma1.2p1_2604F.1_g325280 Hydrangea macrophylla HOM05D005241 ORTHO05D005862 2.8e-117 426.0 341 61.3
AUR62039979 Chenopodium quinoa HOM05D005241 ORTHO05D005862 8.2e-117 424.5 304 63.2
FAN22G1361 Fragaria x ananassa HOM05D005241 ORTHO05D005862 1.4e-116 423.7 444 50.5
PGSC0003DMG400012851 Solanum tuberosum HOM05D005241 ORTHO05D005862 1.8e-116 423.3 305 65.6
Zm00001eb105960 Zea mays HOM05D005241 ORTHO05D005862 3.4e-115 419.1 276 69.2
Pp3c3_37310 Physcomitrium patens HOM05D005241 ORTHO05D005862 2.5e-113 412.9 304 61.5
Sed0027242 Sechium edule HOM05D005241 ORTHO05D005862 3.5e-112 409.1 236 78.0
EL10Ac8g18254 Beta vulgaris HOM05D005241 ORTHO05D005862 4.6e-112 408.7 309 59.2
Zm00001eb105910 Zea mays HOM05D005241 ORTHO05D005862 4.6e-112 408.7 284 65.8
Hund26388 Selenicereus undatus HOM05D005241 ORTHO05D005862 5.0e-106 388.7 312 59.0
Migut.J01437 Erythranthe guttata HOM05D005241 ORTHO05D005862 1.9e-97 360.1 212 76.4
MELO3C029512.2 Cucumis melo HOM05D005241 ORTHO05D005862 1.1e-89 334.3 251 62.9
Carub.0008s1821 Capsella rubella HOM05D005241 ORTHO05D005862 1.9e-89 333.6 199 75.9
Cpa.g.sc450.6 Carica papaya HOM05D005241 ORTHO05D005862 2.7e-88 329.7 201 73.6
SEGI_04095 Sequoiadendron giganteum HOM05D005241 ORTHO05D005862 1.8e-87 327.0 214 69.6
TPR.G5299 Trifolium pratense HOM05D005241 ORTHO05D005862 2.4e-84 316.6 186 78.0
TPR.G40451 Trifolium pratense HOM05D005241 ORTHO05D005862 2.0e-83 313.5 176 78.4
EL10Ac9g22414 Beta vulgaris HOM05D005241 ORTHO05D005862 1.4e-79 300.8 304 49.3
Prupe.1G095300 Prunus persica HOM05D005241 ORTHO05D005862 3.0e-79 299.7 169 77.5
Nitab4.5_0000692g0020 Nicotiana tabacum HOM05D005241 ORTHO05D005862 1.4e-68 264.2 305 49.2
EL10Ac7g17876 Beta vulgaris HOM05D005241 ORTHO05D005862 2.8e-48 196.8 208 47.1
Glyma.17G067650 Glycine max HOM05D005241 ORTHO05D005862 3.0e-42 176.8 87 89.7
MELO3C017513.2 Cucumis melo HOM05D005241 ORTHO05D005862 9.5e-41 171.8 138 58.7
MBI18_g46216_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 6.8e-39 165.6 99 74.7
Hund09002 Selenicereus undatus HOM05D000185 ORTHO05D000105 3.1e-31 140.2 96 66.7
Nn8g41235 Nelumbo nucifera HOM05D005241 ORTHO05D005862 3.8e-29 133.3 77 75.3
AagrBONN_evm.TU.Sc2ySwM_228.5641 Anthoceros agrestis HOM05D005241 ORTHO05D005862 6.0e-27 125.9 311 31.5
Sc08g0005370 Simmondsia chinensis HOM05D005241 ORTHO05D005862 1.0e-26 125.2 79 70.9
MBI18_g29570_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 3.3e-25 120.2 89 60.7
FAN12G2859 Fragaria x ananassa HOM05D005241 ORTHO05D005862 7.3e-25 119.0 68 77.9
SHI03002 Sapria himalayana HOM05D005241 ORTHO05D005862 9.0e-23 112.1 312 27.9
Peaxi162Scf00014g00192 Petunia axillaris HOM05D005241 ORTHO05D005862 1.6e-19 101.3 62 77.4
CBR_g30152 Chara braunii HOM05D010403 ORTHO05D005862 1.1e-15 88.6 242 28.9
arahy.Tifrunner.gnm1.ann1.6LUE8P Arachis hypogaea HOM05D005241 ORTHO05D005862 6.4e-13 79.3 78 56.4
CBR_g30241 Chara braunii HOM05D005241 ORTHO05D005862 3.2e-12 77.0 323 25.1
MBI18_g11928_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 6.7e-10 69.3 47 68.1
Peaxi162Scf00013g00004 Petunia axillaris HOM05D000090 ORTHO05D001322 3.3e-09 67.0 41 68.3
MBI19_g36862_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 3.7e-08 63.5 50 54.0
Peaxi162Scf00609g00310 Petunia axillaris HOM05D004037 ORTHO05D019316 1.5e-06 58.2 40 70.0


User provided reference genes

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