Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G5328 Trifolium pratense HOM05D000519 ORTHO05D000959 7.1e-54 213.8 115 100.0
TPR.G5357 Trifolium pratense HOM05D000519 ORTHO05D000959 3.3e-43 178.3 115 81.7
TPR.G5331 Trifolium pratense HOM05D000519 ORTHO05D000959 9.9e-40 166.8 113 78.8
Medtr0013s0070 Medicago truncatula HOM05D000519 ORTHO05D000959 7.1e-30 134.0 112 65.2
Medtr2g028080 Medicago truncatula HOM05D000519 ORTHO05D000959 3.5e-29 131.7 111 64.0
Medtr0013s0060 Medicago truncatula HOM05D000519 ORTHO05D000959 2.5e-27 125.6 112 62.5
Medtr5g091330 Medicago truncatula HOM05D000519 ORTHO05D000959 3.3e-27 125.2 104 61.5
Medtr0437s0020 Medicago truncatula HOM05D000519 ORTHO05D000959 7.4e-27 124.0 112 59.8
TPR.G354 Trifolium pratense HOM05D000519 ORTHO05D000959 2.1e-26 122.5 113 63.7
Medtr2g028520 Medicago truncatula HOM05D000519 ORTHO05D000959 3.7e-26 121.7 114 62.3
Medtr8g012950 Medicago truncatula HOM05D000519 ORTHO05D000959 2.0e-24 115.9 114 57.0
Medtr6g022420 Medicago truncatula HOM05D000519 ORTHO05D000959 4.5e-24 114.8 112 55.4
Medtr5g091360 Medicago truncatula HOM05D000519 ORTHO05D000959 5.0e-23 111.3 115 53.9
Psat1g189040 Pisum sativum HOM05D000519 ORTHO05D000959 1.2e-21 106.7 116 50.0
Medtr6g022430 Medicago truncatula HOM05D000519 ORTHO05D000959 1.6e-21 106.3 109 52.3
Medtr5g091260 Medicago truncatula HOM05D000519 ORTHO05D000959 4.6e-21 104.8 116 52.6
Medtr5g091280 Medicago truncatula HOM05D000519 ORTHO05D000959 2.3e-20 102.4 116 52.6
Medtr5g091520 Medicago truncatula HOM05D000519 ORTHO05D000959 2.8e-18 95.5 99 55.6
TPR.G19994 Trifolium pratense HOM05D000519 ORTHO05D000959 1.1e-17 93.6 102 54.9
Medtr4g017620 Medicago truncatula HOM05D000519 ORTHO05D000959 1.8e-17 92.8 115 53.0
Ca_21040_v3 Cicer arietinum L. HOM05D000519 ORTHO05D000959 3.1e-17 92.0 117 53.0
Medtr8g079410 Medicago truncatula HOM05D000519 ORTHO05D000959 4.1e-17 91.7 119 48.7
Medtr6g078440 Medicago truncatula HOM05D000519 ORTHO05D000959 6.9e-17 90.9 83 56.6
TPR.G38006 Trifolium pratense HOM05D000519 ORTHO05D000959 2.0e-16 89.4 110 46.4
Medtr4g040310 Medicago truncatula HOM05D000519 ORTHO05D000959 4.5e-16 88.2 119 50.4
Medtr4g133540 Medicago truncatula HOM05D000519 ORTHO05D000959 4.5e-16 88.2 112 51.8
Phvul.003G084300 Phaseolus vulgaris HOM05D000519 ORTHO05D000959 5.9e-16 87.8 114 50.9
Psat4g004160 Pisum sativum HOM05D000519 ORTHO05D000959 1.3e-15 86.7 110 54.5
Psat7g244200 Pisum sativum HOM05D000519 ORTHO05D000959 3.8e-15 85.1 103 51.5
TPR.G37998 Trifolium pratense HOM05D000519 ORTHO05D000959 1.4e-14 83.2 120 45.0
Psat7g244080 Pisum sativum HOM05D000519 ORTHO05D000959 5.5e-14 81.3 108 47.2
TPR.G945 Trifolium pratense HOM05D000519 ORTHO05D000959 5.5e-14 81.3 103 45.6
Medtr2g076800 Medicago truncatula HOM05D000519 ORTHO05D000959 7.2e-14 80.9 104 48.1
Psat4g004120 Pisum sativum HOM05D000519 ORTHO05D000959 9.4e-14 80.5 102 53.9
TPR.G5945 Trifolium pratense HOM05D004898 ORTHO05D005574 2.1e-13 79.3 89 55.1
VMungo1215G1198 Vigna mungo HOM05D000519 ORTHO05D000959 3.6e-13 78.6 102 50.0
Lalb_Chr15g0088031 Lupinus albus HOM05D000519 ORTHO05D000959 1.0e-12 77.0 100 49.0
Medtr2g076740 Medicago truncatula HOM05D000519 ORTHO05D000959 1.0e-12 77.0 104 49.0
Psat4g004080 Pisum sativum HOM05D000519 ORTHO05D000959 1.0e-12 77.0 102 52.0
Medtr0219s0010 Medicago truncatula HOM05D000519 ORTHO05D000959 1.4e-12 76.6 96 51.0
TPR.G35897 Trifolium pratense HOM05D000519 ORTHO05D000959 3.9e-12 75.1 116 44.8
Medtr4g095630 Medicago truncatula HOM05D000519 ORTHO05D000959 1.5e-11 73.2 105 43.8
Medtr2g103740 Medicago truncatula HOM05D000519 ORTHO05D000959 2.0e-11 72.8 109 45.0
Psat7g244120 Pisum sativum HOM05D000519 ORTHO05D000959 2.5e-11 72.4 96 49.0
AL8G10420 Arabidopsis lyrata HOM05D000519 ORTHO05D000959 3.3e-11 72.0 97 48.5
Lj3g0000523 Lotus japonicus HOM05D000519 ORTHO05D000959 1.7e-10 69.7 96 49.0
Haze_06945 Corylus avellana HOM05D000519 ORTHO05D000959 4.8e-10 68.2 104 50.0
AT5G47550 Arabidopsis thaliana HOM05D000519 ORTHO05D000959 1.1e-09 67.0 97 45.4
Cfa000088 Carpinus fangiana HOM05D000519 ORTHO05D000959 1.1e-09 67.0 110 42.7
Carub.0008s0023 Capsella rubella HOM05D000519 ORTHO05D000959 1.8e-09 66.2 72 50.0
CiPaw.09G103500 Carya illinoinensis HOM05D000519 ORTHO05D000959 1.8e-09 66.2 103 37.9
Lalb_Chr18g0057041 Lupinus albus HOM05D000519 ORTHO05D000959 1.8e-09 66.2 110 45.5
arahy.Tifrunner.gnm1.ann1.QX2NVJ Arachis hypogaea HOM05D000519 ORTHO05D000959 2.4e-09 65.9 72 45.8
Ca_00730_v3 Cicer arietinum L. HOM05D000519 ORTHO05D000959 2.4e-09 65.9 106 45.3
TPR.G35340 Trifolium pratense HOM05D000519 ORTHO05D000959 3.1e-09 65.5 105 41.0
Ciclev10009506m.g Citrus clementina HOM05D000519 ORTHO05D000959 4.1e-09 65.1 104 40.4
Glyma.07G266000 Glycine max HOM05D000519 ORTHO05D000959 4.1e-09 65.1 95 49.5
CARHR173800 Cardamine hirsuta HOM05D000519 ORTHO05D000959 5.3e-09 64.7 95 43.2
Ca_21039_v3 Cicer arietinum L. HOM05D000519 ORTHO05D000959 5.3e-09 64.7 102 42.2
Glyma.09G010900 Glycine max HOM05D000519 ORTHO05D000959 5.3e-09 64.7 100 43.0
Thecc.06G234700 Theobroma cacao HOM05D000519 ORTHO05D000959 5.3e-09 64.7 102 43.1
Glyma.04G096400 Glycine max HOM05D000519 ORTHO05D000959 6.9e-09 64.3 100 43.0
Glyma.09G110600 Glycine max HOM05D000519 ORTHO05D000959 6.9e-09 64.3 100 43.0
Glyma.15G115300 Glycine max HOM05D000519 ORTHO05D000959 6.9e-09 64.3 100 42.0
Glyma.19G206500 Glycine max HOM05D000519 ORTHO05D000959 6.9e-09 64.3 100 43.0
Medtr5g098550 Medicago truncatula HOM05D000519 ORTHO05D000959 9.1e-09 63.9 115 41.7
TPR.G8223 Trifolium pratense HOM05D000519 ORTHO05D000959 9.1e-09 63.9 66 57.6
TPR.G30458 Trifolium pratense HOM05D000519 ORTHO05D000959 1.2e-08 63.5 97 45.4
Haze_09252 Corylus avellana HOM05D000519 ORTHO05D000959 2.0e-08 62.8 102 41.2
Duzib192G0996 Durio zibethinus HOM05D000519 ORTHO05D000959 2.0e-08 62.8 103 42.7
Sc24g0000290 Simmondsia chinensis HOM05D000519 ORTHO05D000959 2.0e-08 62.8 104 38.5
Peaxi162Scf00924g00021 Petunia axillaris HOM05D000519 ORTHO05D000959 2.6e-08 62.4 75 48.0
Psat4g003920 Pisum sativum HOM05D000519 ORTHO05D000959 2.6e-08 62.4 101 44.6
Cfa019521 Carpinus fangiana HOM05D000519 ORTHO05D000959 3.4e-08 62.0 72 48.6
Glyma.11G064200 Glycine max HOM05D000519 ORTHO05D000959 3.4e-08 62.0 100 42.0
Gohir.A06G153800 Gossypium hirsutum HOM05D000519 ORTHO05D000959 3.4e-08 62.0 82 47.6
Medtr2g026040 Medicago truncatula HOM05D000519 ORTHO05D000959 3.4e-08 62.0 95 43.2
Nn1g07421 Nelumbo nucifera HOM05D000519 ORTHO05D000959 3.4e-08 62.0 73 49.3
Nn5g27758 Nelumbo nucifera HOM05D000519 ORTHO05D000959 3.4e-08 62.0 110 40.9
Gohir.D06G160700 Gossypium hirsutum HOM05D000519 ORTHO05D000959 4.5e-08 61.6 109 40.4
TAR629G0911 Trochodendron aralioides HOM05D000519 ORTHO05D000959 4.5e-08 61.6 113 37.2
arahy.Tifrunner.gnm1.ann1.L1FG9J Arachis hypogaea HOM05D000519 ORTHO05D000959 7.7e-08 60.8 111 40.5
Gorai.010G187300 Gossypium raimondii HOM05D000519 ORTHO05D000959 7.7e-08 60.8 82 47.6
RcHm_v2.0_Chr3g0455001 Rosa chinensis HOM05D000519 ORTHO05D000959 7.7e-08 60.8 96 44.8
GSVIVG01003320001 Vitis vinifera HOM05D000519 ORTHO05D000959 7.7e-08 60.8 98 41.8
Aa31sc118G120 Aethionema arabicum HOM05D000519 ORTHO05D000959 1.0e-07 60.5 100 39.0
Duzib160G0143 Durio zibethinus HOM05D000519 ORTHO05D000959 1.0e-07 60.5 113 38.1
arahy.Tifrunner.gnm1.ann1.WI67VP Arachis hypogaea HOM05D000519 ORTHO05D000959 1.3e-07 60.1 111 38.7
Carub.0004s1417 Capsella rubella HOM05D000519 ORTHO05D000959 1.3e-07 60.1 97 42.3
Ca_21013_v3 Cicer arietinum L. HOM05D000570 ORTHO05D001174 1.3e-07 60.1 70 45.7
Thhalv10001076m.g Eutrema salsugineum HOM05D000519 ORTHO05D000959 1.3e-07 60.1 94 40.4
Gorai.010G187500 Gossypium raimondii HOM05D000519 ORTHO05D000959 1.3e-07 60.1 108 39.8
Gohir.D06G160600 Gossypium hirsutum HOM05D000519 ORTHO05D000959 1.7e-07 59.7 82 46.3
RcHm_v2.0_Chr5g0001051 Rosa chinensis HOM05D000519 ORTHO05D000959 1.7e-07 59.7 98 41.8
Sc17g0007820 Simmondsia chinensis HOM05D000519 ORTHO05D000959 1.7e-07 59.7 107 39.3
TPR.G9095 Trifolium pratense HOM05D000519 ORTHO05D000959 1.7e-07 59.7 105 38.1
AL4G28250 Arabidopsis lyrata HOM05D000519 ORTHO05D000959 2.2e-07 59.3 97 40.2
Gohir.A06G154000 Gossypium hirsutum HOM05D000519 ORTHO05D000959 2.2e-07 59.3 115 40.0
Lalb_Chr20g0119301 Lupinus albus HOM05D000519 ORTHO05D000959 2.2e-07 59.3 106 39.6
TPR.G5977 Trifolium pratense HOM05D000519 ORTHO05D000959 2.2e-07 59.3 100 45.0
A09p23090 Brassica napus HOM05D000519 ORTHO05D000959 2.9e-07 58.9 98 40.8
BraA09t37913Z Brassica rapa HOM05D000519 ORTHO05D000959 2.9e-07 58.9 98 40.8
CsaV3_1G017140 Cucumis sativus L. HOM05D000519 ORTHO05D000959 2.9e-07 58.9 73 41.1
Gohir.D06G160800 Gossypium hirsutum HOM05D000519 ORTHO05D000959 2.9e-07 58.9 98 44.9
Gorai.010G187700 Gossypium raimondii HOM05D000519 ORTHO05D000959 2.9e-07 58.9 98 44.9
Nn3g21163 Nelumbo nucifera HOM05D000519 ORTHO05D000959 2.9e-07 58.9 73 45.2
Hma1.2p1_0657F.1_g197050 Hydrangea macrophylla HOM05D000519 ORTHO05D000959 3.8e-07 58.5 74 48.6
Psat1g199880 Pisum sativum HOM05D000519 ORTHO05D000959 3.8e-07 58.5 110 40.9
Sp2g12280 Schrenkiella parvula HOM05D000519 ORTHO05D000959 3.8e-07 58.5 101 41.6
TPR.G21870 Trifolium pratense HOM05D000519 ORTHO05D000959 3.8e-07 58.5 105 38.1
VMungo0540G0061 Vigna mungo HOM05D000519 ORTHO05D000959 3.8e-07 58.5 99 38.4
Nn1g03277 Nelumbo nucifera HOM05D000519 ORTHO05D000959 5.0e-07 58.2 107 41.1
Nn3g21162 Nelumbo nucifera HOM05D000519 ORTHO05D000959 5.0e-07 58.2 68 48.5
Psat1g175600 Pisum sativum HOM05D000519 ORTHO05D000959 5.0e-07 58.2 101 45.5
Psat4g003880 Pisum sativum HOM05D000519 ORTHO05D000959 5.0e-07 58.2 101 42.6
QL05p069213 Quercus lobata HOM05D000519 ORTHO05D000959 5.0e-07 58.2 68 50.0
TPR.G5936 Trifolium pratense HOM05D000919 ORTHO05D001187 5.0e-07 58.2 100 44.0
Ciclev10002632m.g Citrus clementina HOM05D000519 ORTHO05D000959 6.5e-07 57.8 75 48.0
Ciclev10004025m.g Citrus clementina HOM05D000519 ORTHO05D000959 6.5e-07 57.8 75 48.0
QL05p069227 Quercus lobata HOM05D000519 ORTHO05D000959 6.5e-07 57.8 68 48.5
TPR.G33246 Trifolium pratense HOM05D000519 ORTHO05D000959 6.5e-07 57.8 86 45.3
BcaC04g21616 Brassica carinata HOM05D000519 ORTHO05D000959 8.5e-07 57.4 97 40.2
C09p29840 Brassica napus HOM05D000519 ORTHO05D000959 8.5e-07 57.4 97 40.2
BolC9t55847H Brassica oleracea HOM05D000519 ORTHO05D000959 8.5e-07 57.4 97 40.2
COL.COLO4_31900 Corchorus olitorius HOM05D000919 ORTHO05D001187 8.5e-07 57.4 74 47.3
Gohir.A06G154100 Gossypium hirsutum HOM05D000519 ORTHO05D000959 8.5e-07 57.4 103 41.7
Oeu047064.1 Olea europaea HOM05D000519 ORTHO05D000959 8.5e-07 57.4 114 37.7
Prupe.4G008900 Prunus persica HOM05D000519 ORTHO05D000959 8.5e-07 57.4 114 39.5
ClCG01G010410 Citrullus lanatus HOM05D000519 ORTHO05D000959 1.1e-06 57.0 106 34.0
FAN21G0953 Fragaria x ananassa HOM05D000919 ORTHO05D001187 1.1e-06 57.0 93 38.7
BcaC06g31374 Brassica carinata HOM05D000519 ORTHO05D000959 1.4e-06 56.6 83 42.2
CAN.G1263.20 Capsicum annuum HOM05D000519 ORTHO05D000959 1.9e-06 56.2 73 41.1
Psat4g004040 Pisum sativum HOM05D000519 ORTHO05D000959 1.9e-06 56.2 68 50.0
RcHm_v2.0_Chr4g0409301 Rosa chinensis HOM05D000054 ORTHO05D000171 1.9e-06 56.2 68 47.1
TPR.G21872 Trifolium pratense HOM05D000519 ORTHO05D000959 1.9e-06 56.2 105 36.2
Ciclev10017209m.g Citrus clementina HOM05D000519 ORTHO05D000959 2.5e-06 55.8 102 42.2
Thhalv10017424m.g Eutrema salsugineum HOM05D000519 ORTHO05D000959 2.5e-06 55.8 114 36.8
Manes.09G039400 Manihot esculenta HOM05D000519 ORTHO05D000959 2.5e-06 55.8 101 39.6
Phvul.006G142600 Phaseolus vulgaris HOM05D000519 ORTHO05D000959 2.5e-06 55.8 95 36.8
AL7G38460 Arabidopsis lyrata HOM05D000519 ORTHO05D000959 3.2e-06 55.5 104 38.5
Ciclev10003263m.g Citrus clementina HOM05D000519 ORTHO05D000959 3.2e-06 55.5 100 37.0
Nitab4.5_0001735g0110 Nicotiana tabacum HOM05D000519 ORTHO05D000959 3.2e-06 55.5 78 44.9
Nitab4.5_0004646g0100 Nicotiana tabacum HOM05D000519 ORTHO05D000959 3.2e-06 55.5 109 34.9
Potri.006G014500 Populus trichocarpa HOM05D000519 ORTHO05D000959 3.2e-06 55.5 104 38.5
arahy.Tifrunner.gnm1.ann1.2GNJ9W Arachis hypogaea HOM05D057648 ORTHO05D084382 4.2e-06 55.1 108 35.2
BcaB07g30771 Brassica carinata HOM05D000519 ORTHO05D000959 4.2e-06 55.1 97 39.2
C07p31200 Brassica napus HOM05D000519 ORTHO05D000959 4.2e-06 55.1 102 38.2
Ciclev10003705m.g Citrus clementina HOM05D000519 ORTHO05D000959 4.2e-06 55.1 73 42.5
Gohir.D01G221401 Gossypium hirsutum HOM05D000519 ORTHO05D000959 4.2e-06 55.1 69 44.9
Gorai.002G268000 Gossypium raimondii HOM05D000519 ORTHO05D000959 4.2e-06 55.1 69 44.9
Nitab4.5_0001109g0080 Nicotiana tabacum HOM05D000519 ORTHO05D000959 4.2e-06 55.1 114 35.1
THA.LOC104815487 Tarenaya hassleriana HOM05D000519 ORTHO05D000959 4.2e-06 55.1 105 34.3
A09p24850 Brassica napus HOM05D000519 ORTHO05D000959 5.5e-06 54.7 102 39.2
Cpa.g.sc75.103 Carica papaya HOM05D000519 ORTHO05D000959 5.5e-06 54.7 107 34.6
Os03g0210100 Oryza sativa ssp. japonica HOM05D000519 ORTHO05D000959 5.5e-06 54.7 104 35.6
Ca_02703_v3 Cicer arietinum L. HOM05D000519 ORTHO05D000959 7.2e-06 54.3 106 37.7
MD05G1358900 Malus domestica HOM05D000519 ORTHO05D000959 7.2e-06 54.3 108 36.1
Peaxi162Scf00924g00023 Petunia axillaris HOM05D000519 ORTHO05D000959 7.2e-06 54.3 104 33.7
Peaxi162Scf00924g00031 Petunia axillaris HOM05D000519 ORTHO05D000959 7.2e-06 54.3 104 33.7
Psat2g010240 Pisum sativum HOM05D000519 ORTHO05D000959 7.2e-06 54.3 110 38.2
RcHm_v2.0_Chr5g0040441 Rosa chinensis HOM05D000054 ORTHO05D000171 7.2e-06 54.3 68 45.6
TWI63G0767 Tripterygium wilfordii HOM05D000519 ORTHO05D000959 7.2e-06 54.3 102 36.3
BolC7t43661H Brassica oleracea HOM05D000519 ORTHO05D000959 9.4e-06 53.9 102 38.2
HanXRQChr04g0096491 Helianthus annuus HOM05D000519 ORTHO05D000959 9.4e-06 53.9 103 33.0
PGR042G1719 Punica granatum HOM05D000519 ORTHO05D000959 9.4e-06 53.9 68 44.1
RcHm_v2.0_Chr5g0001251 Rosa chinensis HOM05D000054 ORTHO05D000171 9.4e-06 53.9 92 39.1


User provided reference genes

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