Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G5290 Trifolium pratense HOM05D005919 ORTHO05D007176 0.0e+00 1196.8 586 100.0
Medtr4g129500 Medicago truncatula HOM05D005919 ORTHO05D007176 1.9e-272 942.2 533 86.3
Psat4g048080 Pisum sativum HOM05D005919 ORTHO05D007176 3.4e-269 931.4 540 85.0
Ca_21183_v3 Cicer arietinum L. HOM05D005919 ORTHO05D007176 2.7e-258 895.2 494 88.1
VMungo1215G1350 Vigna mungo HOM05D005919 ORTHO05D007176 7.3e-256 887.1 540 80.2
Phvul.003G151000 Phaseolus vulgaris HOM05D005919 ORTHO05D007176 6.9e-254 880.6 540 79.8
Glyma.13G091700 Glycine max HOM05D005919 ORTHO05D007176 8.4e-252 873.6 543 79.0
Lj4g0016840 Lotus japonicus HOM05D005919 ORTHO05D007176 8.4e-252 873.6 536 80.0
Lalb_Chr12g0199061 Lupinus albus HOM05D005919 ORTHO05D007176 3.0e-249 865.1 538 78.6
arahy.Tifrunner.gnm1.ann1.KJ1SMN Arachis hypogaea HOM05D005919 ORTHO05D007176 1.8e-238 829.3 542 75.8
arahy.Tifrunner.gnm1.ann1.L1AVC7 Arachis hypogaea HOM05D005919 ORTHO05D007176 3.4e-237 825.1 542 75.3
arahy.Tifrunner.gnm1.ann1.7FR1J2 Arachis hypogaea HOM05D005919 ORTHO05D007176 2.9e-236 822.0 542 75.1
arahy.Tifrunner.gnm1.ann1.F7IW15 Arachis hypogaea HOM05D005919 ORTHO05D007176 2.5e-232 808.9 539 74.6
arahy.Tifrunner.gnm1.ann1.WJA0QS Arachis hypogaea HOM05D005919 ORTHO05D007176 2.2e-228 795.8 490 78.2
RcHm_v2.0_Chr4g0404951 Rosa chinensis HOM05D005919 ORTHO05D007176 9.7e-224 780.4 506 72.7
Duzib150G0612 Durio zibethinus HOM05D005919 ORTHO05D007176 5.9e-221 771.2 537 69.6
CANSAT11G0901 Cannabis sativa HOM05D005919 ORTHO05D007176 1.1e-219 766.9 519 71.5
Prupe.1G097400 Prunus persica HOM05D005919 ORTHO05D007176 4.2e-219 765.0 520 70.6
Thecc.09G160900 Theobroma cacao HOM05D005919 ORTHO05D007176 5.5e-219 764.6 531 69.7
FAN12G0251 Fragaria x ananassa HOM05D005919 ORTHO05D007176 4.6e-218 761.5 539 68.5
Manes.15G095400 Manihot esculenta HOM05D005919 ORTHO05D007176 7.9e-218 760.8 523 70.0
GSVIVG01023723001 Vitis vinifera HOM05D005919 ORTHO05D007176 1.0e-217 760.4 525 70.1
Actinidia02641 Actinidia chinensis HOM05D005919 ORTHO05D007176 1.4e-217 760.0 534 70.6
QL02p095651 Quercus lobata HOM05D005919 ORTHO05D007176 1.8e-217 759.6 534 69.9
FvH4_4g09660 Fragaria vesca HOM05D005919 ORTHO05D007176 3.0e-217 758.8 539 68.5
TAR383G0301 Trochodendron aralioides HOM05D005919 ORTHO05D007176 8.8e-217 757.3 525 70.1
FAN17G2955 Fragaria x ananassa HOM05D005919 ORTHO05D007176 2.6e-216 755.7 546 68.1
Rhsim01G0012200 Rhododendron simsii HOM05D005919 ORTHO05D007176 2.6e-216 755.7 526 70.2
FAN12G4285 Fragaria x ananassa HOM05D005919 ORTHO05D007176 5.7e-216 754.6 546 67.6
Hma1.2p1_1531F.1_g289233 Hydrangea macrophylla HOM05D005919 ORTHO05D007176 1.3e-215 753.4 526 69.0
FAN22G0736 Fragaria x ananassa HOM05D005919 ORTHO05D007176 4.1e-214 748.4 553 67.1
MD16G1262500 Malus domestica HOM05D005919 ORTHO05D007176 6.9e-214 747.7 502 70.5
AUR62013597 Chenopodium quinoa HOM05D005919 ORTHO05D007176 1.5e-213 746.5 509 68.4
EL10Ac1g01561 Beta vulgaris HOM05D005919 ORTHO05D007176 2.6e-213 745.7 539 66.0
Nn2g12541 Nelumbo nucifera HOM05D005919 ORTHO05D007176 2.6e-213 745.7 537 68.7
Ciclev10007971m.g Citrus clementina HOM05D005919 ORTHO05D007176 7.7e-213 744.2 534 68.9
PSO063G4858 Papaver somniferum HOM05D005919 ORTHO05D007176 1.3e-212 743.4 527 67.9
TWI53G0694 Tripterygium wilfordii HOM05D005919 ORTHO05D007176 3.8e-212 741.9 528 67.8
Aqoxy7G03239_Aqoxy7G03240 Aquilegia oxysepala HOM05D005919 ORTHO05D007176 6.5e-212 741.1 542 67.5
Cc06_g14010 Coffea canephora HOM05D005919 ORTHO05D007176 1.6e-210 736.5 539 64.6
Eucgr.C00228 Eucalyptus grandis HOM05D005919 ORTHO05D007176 1.6e-210 736.5 505 69.3
Atru.chr7.495 Acer truncatum HOM05D005919 ORTHO05D007176 4.7e-210 734.9 503 70.8
Gohir.A06G079400 Gossypium hirsutum HOM05D005919 ORTHO05D007176 7.9e-210 734.2 531 67.6
Potri.018G098700 Populus trichocarpa HOM05D005919 ORTHO05D007176 1.0e-209 733.8 523 69.4
HanXRQChr09g0244361 Helianthus annuus HOM05D005919 ORTHO05D007176 5.2e-209 731.5 539 65.9
ECA240G3021 Erigeron canadensis HOM05D005919 ORTHO05D007176 8.8e-209 730.7 537 64.8
Gorai.010G092100 Gossypium raimondii HOM05D005919 ORTHO05D007176 1.5e-208 729.9 550 65.5
PGSC0003DMG401011224 Solanum tuberosum HOM05D005919 ORTHO05D007176 2.6e-208 729.2 534 65.5
Sc02g0003990 Simmondsia chinensis HOM05D005919 ORTHO05D007176 4.4e-208 728.4 508 69.3
Solyc07g006330.2 Solanum lycopersicum HOM05D005919 ORTHO05D007176 9.7e-208 727.2 534 65.7
CAN.G1870.2 Capsicum annuum HOM05D005919 ORTHO05D007176 2.8e-207 725.7 539 64.9
Cfa013547 Carpinus fangiana HOM05D005919 ORTHO05D007176 1.8e-206 723.0 496 71.2
MSTRG.26243 Avicennia marina HOM05D005919 ORTHO05D007176 3.1e-206 722.2 550 63.6
THA.LOC104819083 Tarenaya hassleriana HOM05D005919 ORTHO05D007176 4.5e-205 718.4 502 68.3
Cpa.g.sc42.125 Carica papaya HOM05D005919 ORTHO05D007176 5.9e-205 718.0 512 67.2
ClCG09G013740 Citrullus lanatus HOM05D005919 ORTHO05D007176 1.7e-204 716.5 519 66.1
BcaNung03092 Brassica carinata HOM05D005919 ORTHO05D007176 5.0e-204 714.9 508 66.9
CSS0021645 Camellia sinensis var. sinensis HOM05D005919 ORTHO05D007176 6.5e-204 714.5 521 69.5
MELO3C005285.2 Cucumis melo HOM05D005919 ORTHO05D007176 6.5e-204 714.5 506 68.0
Aa31LG11G14640 Aethionema arabicum HOM05D005919 ORTHO05D007176 3.2e-203 712.2 513 65.9
Lsat_1_v5_gn_7_51941 Lactuca sativa HOM05D005919 ORTHO05D007176 5.5e-203 711.4 524 64.9
Sed0019098 Sechium edule HOM05D005919 ORTHO05D007176 7.2e-203 711.1 506 67.4
Peaxi162Scf00525g00821 Petunia axillaris HOM05D005919 ORTHO05D007176 2.1e-202 709.5 521 66.2
Nitab4.5_0005985g0040 Nicotiana tabacum HOM05D005919 ORTHO05D007176 2.7e-202 709.1 540 63.9
Nitab4.5_0005551g0020 Nicotiana tabacum HOM05D005919 ORTHO05D007176 8.0e-202 707.6 550 63.3
PGR042G2595 Punica granatum HOM05D005919 ORTHO05D007176 1.4e-201 706.8 528 64.6
Migut.K00275 Erythranthe guttata HOM05D005919 ORTHO05D007176 3.0e-201 705.7 521 64.9
CsaV3_1G028860 Cucumis sativus L. HOM05D005919 ORTHO05D007176 6.7e-201 704.5 529 65.2
Lj9A728G22 Lonicera japonica HOM05D005919 ORTHO05D007176 1.7e-199 699.9 533 65.5
BcaC03g13443 Brassica carinata HOM05D005919 ORTHO05D007176 2.2e-199 699.5 534 63.9
AL6G25620 Arabidopsis lyrata HOM05D005919 ORTHO05D007176 8.2e-199 697.6 508 64.6
BolC2t06667H Brassica oleracea HOM05D005919 ORTHO05D007176 5.3e-198 694.9 523 65.2
Carub.0006s1300 Capsella rubella HOM05D005919 ORTHO05D007176 7.0e-198 694.5 538 62.3
Haze_22168 Corylus avellana HOM05D005919 ORTHO05D007176 7.0e-198 694.5 489 69.3
Sp6g29230 Schrenkiella parvula HOM05D005919 ORTHO05D007176 1.2e-197 693.7 509 66.0
A02p02750 Brassica napus HOM05D005919 ORTHO05D007176 7.7e-197 691.0 513 65.5
BraA02t05246Z Brassica rapa HOM05D005919 ORTHO05D007176 7.7e-197 691.0 521 64.9
Thhalv10013155m.g Eutrema salsugineum HOM05D005919 ORTHO05D007176 2.9e-196 689.1 530 64.0
Oeu035674.1 Olea europaea HOM05D005919 ORTHO05D007176 1.5e-195 686.8 536 63.6
PSO782G2448 Papaver somniferum HOM05D005919 ORTHO05D007176 1.5e-192 676.8 484 66.9
AT5G14850 Arabidopsis thaliana HOM05D005919 ORTHO05D007176 4.8e-191 671.8 484 65.7
ATR0824G006 Amborella trichopoda HOM05D005919 ORTHO05D007176 9.1e-190 667.5 534 59.6
SHI02981 Sapria himalayana HOM05D005919 ORTHO05D007176 2.7e-189 666.0 478 66.5
C02p07360 Brassica napus HOM05D005919 ORTHO05D007176 2.9e-188 662.5 494 65.4
Dinv43316 Davidia involucrata HOM05D005919 ORTHO05D007176 8.8e-185 651.0 449 71.7
HPP92_021127 Vanilla planifolia HOM05D005919 ORTHO05D007176 8.8e-185 651.0 538 59.1
Dinv41305 Davidia involucrata HOM05D005919 ORTHO05D007176 1.5e-184 650.2 421 74.8
Hund26692 Selenicereus undatus HOM05D005919 ORTHO05D007176 1.8e-177 626.7 574 55.4
Zm00001eb229730 Zea mays HOM05D005919 ORTHO05D007176 4.0e-177 625.5 521 58.0
SGA_v2.0_scaffold7G04062 Striga asiatica HOM05D005919 ORTHO05D007176 2.0e-173 613.2 512 59.4
DCAR_011759 Daucus carota HOM05D005919 ORTHO05D007176 1.0e-172 610.9 421 70.3
SalBow1G6099 Salvia bowleyana HOM05D005919 ORTHO05D007176 2.0e-168 596.7 429 66.4
Os01g0580100 Oryza sativa ssp. japonica HOM05D005919 ORTHO05D007176 1.7e-164 583.6 487 57.5
Mapoly0152s0016 Marchantia polymorpha HOM05D005919 ORTHO05D007176 2.3e-161 573.2 536 51.1
Hma1.2p1_1531F.1_g289236 Hydrangea macrophylla HOM05D005919 ORTHO05D007176 9.2e-158 561.2 421 64.4
SMO172G0226 Selaginella moellendorffii HOM05D005919 ORTHO05D007176 1.6e-157 560.5 475 55.4
Pp3c10_23620 Physcomitrium patens HOM05D005919 ORTHO05D007176 8.6e-156 554.7 546 50.4
Pp3c10_23630 Physcomitrium patens HOM05D005919 ORTHO05D007176 8.6e-156 554.7 546 50.4
Sopen07g002420 Solanum pennellii HOM05D005919 ORTHO05D007176 3.1e-153 546.2 377 68.7
CiPaw.07G186600 Carya illinoinensis HOM05D005919 ORTHO05D007176 1.2e-152 544.3 380 68.9
Oeu031853.1 Olea europaea HOM05D005919 ORTHO05D007176 2.2e-151 540.0 391 66.5
Zm00001eb229670 Zea mays HOM05D005919 ORTHO05D007176 3.6e-146 522.7 440 57.3
CARHR198500 Cardamine hirsuta HOM05D005919 ORTHO05D007176 7.1e-142 508.4 381 65.9
CDE02G0068 Ceratophyllum demersum HOM05D005919 ORTHO05D007176 8.7e-140 501.5 392 61.2
Dinv42785 Davidia involucrata HOM05D005919 ORTHO05D007176 8.7e-140 501.5 331 73.1
FAN07G1390 Fragaria x ananassa HOM05D005919 ORTHO05D007176 9.3e-134 481.5 479 56.2
SGA_v2.0_scaffold87G27166 Striga asiatica HOM05D005919 ORTHO05D007176 2.1e-125 453.8 512 48.8
vmacro13072 Vaccinium macrocarpon HOM05D005919 ORTHO05D007176 1.3e-124 451.1 513 50.1
Gohir.D06G079000 Gossypium hirsutum HOM05D005919 ORTHO05D007176 2.3e-124 450.3 534 47.8
MD13G1260800 Malus domestica HOM05D005919 ORTHO05D007176 1.8e-116 424.1 431 53.4
COL.COLO4_04535 Corchorus olitorius HOM05D005919 ORTHO05D007176 4.6e-109 399.4 283 69.3
arahy.Tifrunner.gnm1.ann1.IETZ0A Arachis hypogaea HOM05D005919 ORTHO05D007176 3.9e-92 343.2 248 70.6
arahy.Tifrunner.gnm1.ann1.I3IQB6 Arachis hypogaea HOM05D005919 ORTHO05D007176 5.2e-92 342.8 241 69.7
MCO09G503 Micromonas commoda HOM05D005919 ORTHO05D007176 4.4e-83 313.2 459 37.0
Glyma.17G068567 Glycine max HOM05D005919 ORTHO05D007176 7.2e-78 295.8 191 77.0
arahy.Tifrunner.gnm1.ann1.8I3VMK Arachis hypogaea HOM05D005919 ORTHO05D007176 1.1e-70 271.9 203 66.5
Glyma.17G068633 Glycine max HOM05D005919 ORTHO05D007176 1.0e-60 238.8 203 64.0
Psat4g010400 Pisum sativum HOM05D005919 ORTHO05D007176 9.2e-57 225.7 145 78.6
Actinidia20955 Actinidia chinensis HOM05D005919 ORTHO05D007176 3.6e-45 187.2 126 69.8
AUR62026693 Chenopodium quinoa HOM05D005919 ORTHO05D007176 8.1e-45 186.0 121 68.6
Sabra18G0085400 Salix brachista HOM05D005919 ORTHO05D007176 1.1e-44 185.7 138 64.5
PRCOL_00000120 Prasinoderma coloniale HOM05D000722 ORTHO05D007176 3.5e-40 170.6 501 28.7
CDE02G3325 Ceratophyllum demersum HOM05D005919 ORTHO05D007176 6.0e-40 169.9 121 62.8
DCAR_017944 Daucus carota HOM05D005919 ORTHO05D007176 5.6e-30 136.7 133 56.4
GSVIVG01023746001 Vitis vinifera HOM05D005919 ORTHO05D007176 9.9e-27 125.9 89 61.8
Zm00001eb050560 Zea mays HOM05D005919 ORTHO05D007176 6.4e-26 123.2 109 53.2
Zm00001eb260780 Zea mays HOM05D005919 ORTHO05D007176 6.4e-26 123.2 109 53.2
Zm00001eb302550 Zea mays HOM05D005919 ORTHO05D007176 6.4e-26 123.2 109 53.2
Rhsim01G0011300 Rhododendron simsii HOM05D005919 ORTHO05D007176 1.1e-20 105.9 75 66.7
AL1G16380 Arabidopsis lyrata HOM05D005919 ORTHO05D007176 2.2e-18 98.2 80 60.0
Psat4g048040 Pisum sativum HOM05D005919 ORTHO05D007176 2.9e-18 97.8 77 70.1
Actinidia15384 Actinidia chinensis HOM05D005919 ORTHO05D007176 3.8e-18 97.4 85 54.1
SMO145G0125 Selaginella moellendorffii HOM05D009274 ORTHO05D011512 2.0e-11 75.1 296 27.0
ATR0665G630 Amborella trichopoda HOM05D006213 ORTHO05D008107 2.4e-09 68.2 338 23.4
Actinidia12571 Actinidia chinensis HOM05D005597 ORTHO05D007304 2.7e-08 64.7 335 24.2
TAR374G1216 Trochodendron aralioides HOM05D006213 ORTHO05D008107 6.0e-08 63.5 229 27.5
Carub.0001s1664 Capsella rubella HOM05D005597 ORTHO05D007304 1.8e-07 62.0 341 24.9
COL.COLO4_12385 Corchorus olitorius HOM05D006213 ORTHO05D008107 1.8e-07 62.0 214 27.6
Lsat_1_v5_gn_4_39261 Lactuca sativa HOM05D006213 ORTHO05D008107 2.3e-07 61.6 191 27.7
CARHR017370 Cardamine hirsuta HOM05D005597 ORTHO05D007304 3.0e-07 61.2 331 24.5
Thhalv10007218m.g Eutrema salsugineum HOM05D005597 ORTHO05D007304 3.0e-07 61.2 341 24.9
AL1G29070 Arabidopsis lyrata HOM05D005597 ORTHO05D007304 3.9e-07 60.8 340 25.0
ECA234G2079 Erigeron canadensis HOM05D006213 ORTHO05D008107 3.9e-07 60.8 193 30.6
BcaC05g25546 Brassica carinata HOM05D005597 ORTHO05D007304 5.1e-07 60.5 335 24.5
BolC5t30227H Brassica oleracea HOM05D005597 ORTHO05D007304 5.1e-07 60.5 335 24.5
AT1G16900 Arabidopsis thaliana HOM05D005597 ORTHO05D007304 6.7e-07 60.1 341 24.9
BcaC07g38821 Brassica carinata HOM05D005597 ORTHO05D007304 8.7e-07 59.7 336 24.7
C08p17610 Brassica napus HOM05D005597 ORTHO05D007304 8.7e-07 59.7 336 24.7
Aa31LG7G1320 Aethionema arabicum HOM05D005597 ORTHO05D007304 1.1e-06 59.3 326 26.4
BolC8t49386H Brassica oleracea HOM05D005597 ORTHO05D007304 1.1e-06 59.3 333 24.6
Actinidia30939 Actinidia chinensis HOM05D006213 ORTHO05D008107 1.5e-06 58.9 107 32.7
PGR042G3832 Punica granatum HOM05D006213 ORTHO05D008107 1.5e-06 58.9 256 23.4
GSVIVG01018298001 Vitis vinifera HOM05D006213 ORTHO05D008107 1.9e-06 58.5 214 28.0
A08p31230 Brassica napus HOM05D005597 ORTHO05D007304 2.5e-06 58.2 335 23.9
BraA08t35046Z Brassica rapa HOM05D005597 ORTHO05D007304 2.5e-06 58.2 335 23.9
Nitab4.5_0004837g0040 Nicotiana tabacum HOM05D006213 ORTHO05D008107 2.5e-06 58.2 209 26.8
Oeu037443.2 Olea europaea HOM05D006213 ORTHO05D008107 2.5e-06 58.2 211 28.9
CAN.G1585.8 Capsicum annuum HOM05D006213 ORTHO05D008107 3.3e-06 57.8 103 33.0
PGSC0003DMG402031172 Solanum tuberosum HOM05D006213 ORTHO05D008107 3.3e-06 57.8 211 26.5
TWI14G1148 Tripterygium wilfordii HOM05D006213 ORTHO05D008107 3.3e-06 57.8 209 26.8
Dinv44047 Davidia involucrata HOM05D006213 ORTHO05D008107 4.3e-06 57.4 107 31.8
Prupe.2G122100 Prunus persica HOM05D006213 ORTHO05D008107 4.3e-06 57.4 107 30.8
FAN03G1287 Fragaria x ananassa HOM05D006213 ORTHO05D008107 5.6e-06 57.0 209 25.8
Lj9A554T27 Lonicera japonica HOM05D006213 ORTHO05D008107 5.6e-06 57.0 236 27.5
BraA06t24441Z Brassica rapa HOM05D005597 ORTHO05D007304 7.4e-06 56.6 335 24.2
MELO3C022474.2 Cucumis melo HOM05D006213 ORTHO05D008107 7.4e-06 56.6 107 29.9
CsaV3_6G006460 Cucumis sativus L. HOM05D006213 ORTHO05D008107 7.4e-06 56.6 107 30.8
C05p15120 Brassica napus HOM05D005597 ORTHO05D007304 9.6e-06 56.2 332 23.5
Pp3c18_21620 Physcomitrium patens HOM05D006213 ORTHO05D008107 9.6e-06 56.2 256 24.2


User provided reference genes

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