Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G5276 Trifolium pratense HOM05D006559 ORTHO05D008867 0.0e+00 1419.1 708 100.0
Medtr4g122000 Medicago truncatula HOM05D006559 ORTHO05D008867 0.0e+00 1148.7 709 82.9
Ca_21444_v3 Cicer arietinum L. HOM05D006559 ORTHO05D008867 0.0e+00 1134.0 707 81.9
Psat4g024080 Pisum sativum HOM05D006559 ORTHO05D008867 0.0e+00 1111.3 712 80.8
Glyma.17G033200 Glycine max HOM05D006559 ORTHO05D008867 4.8e-286 987.6 712 73.2
Lj4g0009670 Lotus japonicus HOM05D006559 ORTHO05D008867 4.8e-286 987.6 714 72.0
VMungo1215G0265 Vigna mungo HOM05D006559 ORTHO05D008867 5.0e-283 977.6 704 72.0
Glyma.07G240200 Glycine max HOM05D006559 ORTHO05D008867 3.5e-276 954.9 710 71.3
Phvul.003G113900 Phaseolus vulgaris HOM05D006559 ORTHO05D008867 5.5e-274 947.6 694 70.5
Lalb_Chr07g0182081 Lupinus albus HOM05D006559 ORTHO05D008867 2.7e-273 945.3 705 70.8
arahy.Tifrunner.gnm1.ann1.Y9UCUD Arachis hypogaea HOM05D006559 ORTHO05D008867 3.7e-270 934.9 706 68.8
arahy.Tifrunner.gnm1.ann1.57X5SD Arachis hypogaea HOM05D006559 ORTHO05D008867 1.7e-267 926.0 706 68.7
Thecc.04G299700 Theobroma cacao HOM05D006559 ORTHO05D008867 2.0e-239 832.8 704 62.6
Dinv44291 Davidia involucrata HOM05D006559 ORTHO05D008867 1.3e-238 830.1 705 62.6
vmacro08053 Vaccinium macrocarpon HOM05D006559 ORTHO05D008867 5.6e-234 814.7 713 60.4
Rhsim04G0235400 Rhododendron simsii HOM05D006559 ORTHO05D008867 2.1e-233 812.8 702 60.7
Sabra10G0111500 Salix brachista HOM05D006559 ORTHO05D008867 4.4e-231 805.1 703 60.2
Potri.010G144400 Populus trichocarpa HOM05D006559 ORTHO05D008867 3.7e-230 802.0 697 60.4
Cpa.g.sc9.65 Carica papaya HOM05D006559 ORTHO05D008867 7.1e-229 797.7 710 60.6
Gohir.A09G234700 Gossypium hirsutum HOM05D006559 ORTHO05D008867 2.7e-228 795.8 711 59.1
Gorai.006G258500 Gossypium raimondii HOM05D006559 ORTHO05D008867 2.3e-227 792.7 706 58.8
Cfa008663 Carpinus fangiana HOM05D006559 ORTHO05D008867 3.9e-227 792.0 706 58.9
Gohir.D09G235500 Gossypium hirsutum HOM05D006559 ORTHO05D008867 5.1e-227 791.6 706 58.9
Manes.03G204300 Manihot esculenta HOM05D006559 ORTHO05D008867 5.1e-227 791.6 708 59.3
Hma1.2p1_0078F.1_g039970 Hydrangea macrophylla HOM05D006559 ORTHO05D008867 8.1e-225 784.3 660 62.4
CANSAT64G0770 Cannabis sativa HOM05D006559 ORTHO05D008867 1.1e-224 783.9 697 60.1
TWI73G0870 Tripterygium wilfordii HOM05D006559 ORTHO05D008867 1.4e-221 773.5 710 58.0
Ciclev10004497m.g Citrus clementina HOM05D006559 ORTHO05D008867 1.7e-219 766.5 712 58.0
RcHm_v2.0_Chr4g0424901 Rosa chinensis HOM05D006559 ORTHO05D008867 1.3e-217 760.4 703 58.2
GSVIVG01035001001 Vitis vinifera HOM05D006559 ORTHO05D008867 1.3e-217 760.4 703 58.0
Sc19g0003140 Simmondsia chinensis HOM05D006559 ORTHO05D008867 1.6e-217 760.0 702 56.1
Migut.G00055 Erythranthe guttata HOM05D006559 ORTHO05D008867 8.1e-217 757.7 705 57.3
Eucgr.H04041 Eucalyptus grandis HOM05D006559 ORTHO05D008867 2.4e-216 756.1 697 58.2
AUR62039288 Chenopodium quinoa HOM05D006559 ORTHO05D008867 1.7e-214 750.0 721 54.5
Cc03_g00890 Coffea canephora HOM05D006559 ORTHO05D008867 6.4e-214 748.0 695 58.0
CAN.G244.5 Capsicum annuum HOM05D006559 ORTHO05D008867 1.1e-213 747.3 704 57.8
Nitab4.5_0011895g0010 Nicotiana tabacum HOM05D006559 ORTHO05D008867 4.2e-213 745.3 709 57.4
MD13G1155000 Malus domestica HOM05D006559 ORTHO05D008867 1.2e-212 743.8 710 57.5
MSTRG.3859 Avicennia marina HOM05D006559 ORTHO05D008867 2.1e-212 743.0 703 55.9
Peaxi162Scf00228g00226 Petunia axillaris HOM05D006559 ORTHO05D008867 2.1e-212 743.0 706 57.9
MBI18_g32021_MAGBIO Magnolia biondii HOM05D006559 ORTHO05D008867 6.6e-211 738.0 698 56.3
PGSC0003DMG400021843 Solanum tuberosum HOM05D006559 ORTHO05D008867 1.1e-210 737.3 689 57.5
Hund11970 Selenicereus undatus HOM05D006559 ORTHO05D008867 3.3e-210 735.7 704 54.5
Aqoxy2G02735 Aquilegia oxysepala HOM05D006559 ORTHO05D008867 7.4e-210 734.6 699 56.5
Sed0004607 Sechium edule HOM05D006559 ORTHO05D008867 4.8e-209 731.9 690 57.4
Sopen01g026050 Solanum pennellii HOM05D006559 ORTHO05D008867 8.1e-209 731.1 690 57.2
CSS0039775 Camellia sinensis var. sinensis HOM05D006559 ORTHO05D008867 1.1e-208 730.7 702 57.1
SGA_v2.0_scaffold18G08402 Striga asiatica HOM05D006559 ORTHO05D008867 1.4e-208 730.3 702 54.7
Nn3g21720 Nelumbo nucifera HOM05D006559 ORTHO05D008867 3.1e-208 729.2 692 57.1
Solyc01g059920.4 Solanum lycopersicum HOM05D006559 ORTHO05D008867 9.0e-208 727.6 690 57.1
PSO210G1317 Papaver somniferum HOM05D006559 ORTHO05D008867 1.2e-207 727.2 705 55.5
FvH4_4g19640 Fragaria vesca HOM05D006559 ORTHO05D008867 1.5e-207 726.9 694 56.1
DCAR_002509 Daucus carota HOM05D006559 ORTHO05D008867 2.6e-207 726.1 708 55.4
MELO3C006713.2 Cucumis melo HOM05D006559 ORTHO05D008867 2.2e-206 723.0 712 56.0
CsaV3_3G015150 Cucumis sativus L. HOM05D006559 ORTHO05D008867 1.1e-205 720.7 712 55.1
ECA246G2012 Erigeron canadensis HOM05D006559 ORTHO05D008867 5.5e-205 718.4 713 55.0
FAN12G1983 Fragaria x ananassa HOM05D006559 ORTHO05D008867 9.3e-205 717.6 705 54.9
AUR62016199 Chenopodium quinoa HOM05D006559 ORTHO05D008867 1.2e-204 717.2 783 49.0
SalBow8G4902 Salvia bowleyana HOM05D006559 ORTHO05D008867 2.7e-204 716.1 708 54.4
Prupe.1G118000 Prunus persica HOM05D006559 ORTHO05D008867 2.3e-203 713.0 709 55.1
Haze_11682 Corylus avellana HOM05D006559 ORTHO05D008867 3.3e-202 709.1 762 52.8
Oeu032013.1 Olea europaea HOM05D006559 ORTHO05D008867 4.3e-202 708.8 698 56.7
THA.LOC104820440 Tarenaya hassleriana HOM05D006559 ORTHO05D008867 2.1e-201 706.4 700 54.6
Lsat_1_v5_gn_6_116281 Lactuca sativa HOM05D006559 ORTHO05D008867 3.8e-198 695.7 707 55.0
COL.COLO4_34624 Corchorus olitorius HOM05D006559 ORTHO05D008867 3.5e-196 689.1 704 53.6
EL10Ac3g05493 Beta vulgaris HOM05D006559 ORTHO05D008867 5.1e-195 685.3 726 50.6
AT3G17030 Arabidopsis thaliana HOM05D006559 ORTHO05D008867 1.6e-193 680.2 712 53.1
Sp3g15250 Schrenkiella parvula HOM05D006559 ORTHO05D008867 8.2e-193 677.9 718 52.5
AL3G30010 Arabidopsis lyrata HOM05D006559 ORTHO05D008867 7.6e-191 671.4 717 52.4
Thhalv10020210m.g Eutrema salsugineum HOM05D006559 ORTHO05D008867 5.0e-190 668.7 712 52.5
Aa31LG8G4060 Aethionema arabicum HOM05D006559 ORTHO05D008867 1.1e-189 667.5 728 51.0
Carub.0003s1678 Capsella rubella HOM05D006559 ORTHO05D008867 5.5e-189 665.2 723 52.1
Duzib151G0228 Durio zibethinus HOM05D006559 ORTHO05D008867 3.9e-187 659.1 699 52.2
A01p37300 Brassica napus HOM05D006559 ORTHO05D008867 3.3e-186 656.0 725 51.2
BraA01t03788Z Brassica rapa HOM05D006559 ORTHO05D008867 1.6e-185 653.7 725 51.0
BcaC09g48654 Brassica carinata HOM05D006559 ORTHO05D008867 6.3e-185 651.7 722 51.1
BolC1t04694H Brassica oleracea HOM05D006559 ORTHO05D008867 1.8e-184 650.2 723 51.2
C01p47240 Brassica napus HOM05D006559 ORTHO05D008867 9.0e-184 647.9 723 51.0
Ah.13g071910 Amaranthus hybridus HOM05D006559 ORTHO05D008867 2.6e-183 646.4 713 49.9
Lj6A690G72 Lonicera japonica HOM05D006559 ORTHO05D008867 1.4e-179 634.0 558 60.8
Atru.chr4.3010 Acer truncatum HOM05D006559 ORTHO05D008867 9.7e-178 627.9 717 51.9
FAN07G1421 Fragaria x ananassa HOM05D006559 ORTHO05D008867 1.7e-177 627.1 691 51.8
ATR0796G144 Amborella trichopoda HOM05D006559 ORTHO05D008867 2.8e-177 626.3 692 50.0
SHI00146 Sapria himalayana HOM05D006559 ORTHO05D008867 2.6e-175 619.8 702 50.0
HanXRQChr08g0236161 Helianthus annuus HOM05D006559 ORTHO05D008867 6.5e-174 615.1 696 51.3
Nitab4.5_0000169g0190 Nicotiana tabacum HOM05D006559 ORTHO05D008867 4.4e-170 602.4 565 58.1
Actinidia40373 Actinidia chinensis HOM05D006559 ORTHO05D008867 7.4e-170 601.7 451 69.6
CiPaw.01G113700 Carya illinoinensis HOM05D006559 ORTHO05D008867 2.4e-168 596.7 545 59.4
Os03g0832500 Oryza sativa ssp. japonica HOM05D006559 ORTHO05D008867 4.2e-157 559.3 703 46.4
Hma1.2p1_0078F.1_g039960 Hydrangea macrophylla HOM05D006559 ORTHO05D008867 1.6e-156 557.4 563 55.1
SEGI_33199 Sequoiadendron giganteum HOM05D006559 ORTHO05D008867 9.8e-154 548.1 717 44.8
ClCG00G004240 Citrullus lanatus HOM05D006559 ORTHO05D008867 3.2e-149 533.1 559 53.8
Zm00001eb063450 Zea mays HOM05D006559 ORTHO05D008867 6.8e-147 525.4 706 45.2
unitig_32.g11851 Utricularia gibba HOM05D006559 ORTHO05D008867 1.1e-136 491.5 674 44.2
CARHR092280 Cardamine hirsuta HOM05D006559 ORTHO05D008867 6.4e-129 465.7 402 60.7
HPP92_015242 Vanilla planifolia HOM05D006559 ORTHO05D008867 5.6e-125 452.6 688 40.4
TPR.G16835 Trifolium pratense HOM05D006559 ORTHO05D008867 3.9e-118 429.9 681 43.2
Mapoly0086s0053 Marchantia polymorpha HOM05D006559 ORTHO05D008867 1.7e-110 404.4 689 37.7
RcHm_v2.0_Chr4g0424931 Rosa chinensis HOM05D006559 ORTHO05D008867 1.1e-104 385.2 398 53.8
AagrBONN_evm.TU.Sc2ySwM_344.4908 Anthoceros agrestis HOM05D006559 ORTHO05D008867 4.2e-104 383.3 673 36.8
TAR365G1053 Trochodendron aralioides HOM05D006559 ORTHO05D008867 8.2e-84 315.8 241 68.5
SMO116G0303 Selaginella moellendorffii HOM05D006559 ORTHO05D008867 3.1e-67 260.8 523 35.8
SMO239G0200 Selaginella moellendorffii HOM05D006559 ORTHO05D008867 4.4e-61 240.4 586 33.1
AUR62044438 Chenopodium quinoa HOM05D006559 ORTHO05D008867 4.0e-46 190.7 174 51.1
Hma1.2p1_0078F.1_g039980 Hydrangea macrophylla HOM05D006559 ORTHO05D008867 8.2e-44 183.0 145 62.1
AUR62035935 Chenopodium quinoa HOM05D006559 ORTHO05D008867 1.6e-39 168.7 205 42.0
Actinidia27128 Actinidia chinensis HOM05D006559 ORTHO05D008867 5.9e-34 150.2 99 75.8
Cc03_g00880 Coffea canephora HOM05D006559 ORTHO05D008867 1.0e-30 139.4 88 77.3
Lj6A690T73 Lonicera japonica HOM05D006559 ORTHO05D008867 6.3e-28 130.2 92 65.2
SMO195G0016 Selaginella moellendorffii HOM05D006559 ORTHO05D008867 9.2e-27 126.3 439 28.2
MBI14_g17950_MAGBIO Magnolia biondii HOM05D006559 ORTHO05D241410 5.9e-26 123.6 144 46.5
RcHm_v2.0_Chr4g0425081 Rosa chinensis HOM05D006559 ORTHO05D008867 5.9e-26 123.6 110 56.4
RcHm_v2.0_Chr4g0425061 Rosa chinensis HOM05D006559 ORTHO05D008867 1.4e-22 112.5 114 53.5
AUR62038912 Chenopodium quinoa HOM05D006559 ORTHO05D008867 1.3e-20 105.9 63 71.4
RcHm_v2.0_Chr4g0425071 Rosa chinensis HOM05D006559 ORTHO05D343184 1.6e-15 89.0 56 69.6
RcHm_v2.0_Chr3g0458131 Rosa chinensis HOM05D006559 ORTHO05D050582 4.9e-12 77.4 73 56.2
Potri.008G105850 Populus trichocarpa HOM05D006559 ORTHO05D050582 1.4e-11 75.9 66 56.1
BcaB04g20870 Brassica carinata HOM05D006559 ORTHO05D019951 6.0e-10 70.5 88 48.9
BcaC01g05501 Brassica carinata HOM05D006559 ORTHO05D019951 3.9e-09 67.8 90 47.8


User provided reference genes

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