Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G5247 Trifolium pratense HOM05D007132 ORTHO05D009120 5.6e-211 737.3 351 100.0
Psat2g145880 Pisum sativum HOM05D007132 ORTHO05D009120 1.4e-190 669.5 348 90.5
Medtr5g025190 Medicago truncatula HOM05D007132 ORTHO05D009120 4.5e-184 647.9 352 86.6
Lj2g0003748 Lotus japonicus HOM05D007132 ORTHO05D009120 5.5e-166 587.8 347 80.1
Glyma.11G089600 Glycine max HOM05D007132 ORTHO05D009120 3.1e-161 572.0 345 78.3
VMungo1215G2638 Vigna mungo HOM05D007132 ORTHO05D009120 3.8e-159 565.1 344 76.2
arahy.Tifrunner.gnm1.ann1.63YFX7 Arachis hypogaea HOM05D007132 ORTHO05D009120 2.9e-151 538.9 354 73.7
arahy.Tifrunner.gnm1.ann1.WE0KUF Arachis hypogaea HOM05D007132 ORTHO05D009120 2.9e-151 538.9 354 73.7
Cfa012869 Carpinus fangiana HOM05D007132 ORTHO05D009120 1.1e-142 510.4 350 69.7
CiPaw.11G075400 Carya illinoinensis HOM05D007132 ORTHO05D009120 2.1e-141 506.1 340 69.1
Atru.chr8.2638 Acer truncatum HOM05D007132 ORTHO05D009120 1.8e-137 493.0 341 67.2
MD05G1209900 Malus domestica HOM05D007132 ORTHO05D009120 4.5e-136 488.4 344 67.4
Manes.S095221 Manihot esculenta HOM05D007132 ORTHO05D009120 7.8e-136 487.6 336 68.5
TWI75G0244 Tripterygium wilfordii HOM05D007132 ORTHO05D009120 3.9e-135 485.3 342 67.0
Gohir.D09G105701 Gossypium hirsutum HOM05D007132 ORTHO05D009120 5.0e-135 485.0 344 68.0
PGR042G0795 Punica granatum HOM05D007132 ORTHO05D009120 6.6e-135 484.6 351 66.4
Thecc.09G252800 Theobroma cacao HOM05D007132 ORTHO05D009120 2.5e-134 482.6 341 68.0
vmacro00083 Vaccinium macrocarpon HOM05D007132 ORTHO05D009120 2.5e-134 482.6 326 71.8
COL.COLO4_33243 Corchorus olitorius HOM05D007132 ORTHO05D009120 9.5e-134 480.7 339 68.4
Gorai.006G123100 Gossypium raimondii HOM05D007132 ORTHO05D009120 9.5e-134 480.7 344 67.7
Nitab4.5_0004157g0010 Nicotiana tabacum HOM05D007132 ORTHO05D009120 1.2e-133 480.3 324 68.2
Duzib168G0014 Durio zibethinus HOM05D007132 ORTHO05D009120 1.6e-133 479.9 332 69.0
FvH4_3g16420 Fragaria vesca HOM05D007132 ORTHO05D009120 2.8e-133 479.2 342 66.7
RcHm_v2.0_Chr5g0027441 Rosa chinensis HOM05D007132 ORTHO05D009120 3.6e-133 478.8 344 66.0
Sopen08g024160 Solanum pennellii HOM05D007132 ORTHO05D009120 3.6e-133 478.8 336 66.7
Gohir.A09G109100 Gossypium hirsutum HOM05D007132 ORTHO05D009120 6.1e-133 478.0 344 67.4
Eucgr.E01138 Eucalyptus grandis HOM05D007132 ORTHO05D009120 1.4e-132 476.9 332 66.9
Potri.001G233200 Populus trichocarpa HOM05D007132 ORTHO05D009120 1.4e-132 476.9 326 69.9
Sabra09G0016800 Salix brachista HOM05D007132 ORTHO05D009120 1.8e-132 476.5 335 68.4
Aqoxy3G02733 Aquilegia oxysepala HOM05D007132 ORTHO05D009120 3.1e-132 475.7 358 63.1
BraA06t25207Z Brassica rapa HOM05D007132 ORTHO05D009120 4.0e-132 475.3 345 63.5
Ciclev10031829m.g Citrus clementina HOM05D007132 ORTHO05D009120 4.0e-132 475.3 341 66.9
Potri.009G025400 Populus trichocarpa HOM05D007132 ORTHO05D009120 8.9e-132 474.2 330 69.1
PGSC0003DMG400001970 Solanum tuberosum HOM05D007132 ORTHO05D009120 8.9e-132 474.2 343 65.0
EL10Ac2g04081 Beta vulgaris HOM05D007132 ORTHO05D009120 1.2e-131 473.8 323 68.7
Thhalv10002595m.g Eutrema salsugineum HOM05D007132 ORTHO05D009120 1.5e-131 473.4 347 64.0
Solyc08g075510.4 Solanum lycopersicum HOM05D007132 ORTHO05D009120 1.5e-131 473.4 336 66.1
CANSAT11G0857 Cannabis sativa HOM05D007132 ORTHO05D009120 4.4e-131 471.9 327 68.5
CARHR154210 Cardamine hirsuta HOM05D007132 ORTHO05D009120 4.4e-131 471.9 352 61.9
Oeu046789.1 Olea europaea HOM05D007132 ORTHO05D009120 1.3e-130 470.3 325 67.4
BcaB01g01051 Brassica carinata HOM05D007132 ORTHO05D009120 1.7e-130 469.9 350 62.6
CAN.G1026.1 Capsicum annuum HOM05D007132 ORTHO05D009120 2.2e-130 469.5 324 67.3
DCAR_028364 Daucus carota HOM05D007132 ORTHO05D009120 2.2e-130 469.5 352 63.6
Sp2g03890 Schrenkiella parvula HOM05D007132 ORTHO05D009120 2.2e-130 469.5 348 62.4
A06p21200 Brassica napus HOM05D007132 ORTHO05D009120 2.9e-130 469.2 348 62.6
BolC3t19289H Brassica oleracea HOM05D007132 ORTHO05D009120 2.9e-130 469.2 348 62.6
QL12p004376 Quercus lobata HOM05D007132 ORTHO05D009120 3.7e-130 468.8 400 58.0
Actinidia32785 Actinidia chinensis HOM05D007132 ORTHO05D009120 2.4e-129 466.1 353 64.9
Aa31LG9G15710 Aethionema arabicum HOM05D007132 ORTHO05D009120 3.2e-129 465.7 331 65.0
Carub.0005s1173 Capsella rubella HOM05D007132 ORTHO05D009120 3.2e-129 465.7 329 65.3
Lj8C1T2 Lonicera japonica HOM05D007132 ORTHO05D009120 4.1e-129 465.3 396 58.3
AUR62009339 Chenopodium quinoa HOM05D007132 ORTHO05D009120 5.4e-129 464.9 322 68.0
Cc08_g05480 Coffea canephora HOM05D007132 ORTHO05D009120 5.4e-129 464.9 334 65.9
Lj8A344T21 Lonicera japonica HOM05D007132 ORTHO05D009120 7.0e-129 464.5 392 58.9
AL5G24560 Arabidopsis lyrata HOM05D007132 ORTHO05D009120 9.2e-129 464.2 346 63.0
C03p70370 Brassica napus HOM05D007132 ORTHO05D009120 1.2e-128 463.8 344 62.5
SalBow8G0736 Salvia bowleyana HOM05D007132 ORTHO05D009120 2.7e-128 462.6 322 65.5
AT3G45880 Arabidopsis thaliana HOM05D007132 ORTHO05D009120 3.5e-128 462.2 350 63.1
FAN11G4000 Fragaria x ananassa HOM05D007132 ORTHO05D009120 3.5e-128 462.2 347 64.8
Lsat_1_v5_gn_6_15181 Lactuca sativa HOM05D007132 ORTHO05D009120 4.6e-128 461.8 337 65.9
Cpa.g.sc90.24 Carica papaya HOM05D004914 ORTHO05D006512 1.0e-127 460.7 351 63.2
FAN25G2365 Fragaria x ananassa HOM05D007132 ORTHO05D009120 3.9e-127 458.8 347 64.6
Nn1g09371 Nelumbo nucifera HOM05D007132 ORTHO05D009120 6.6e-127 458.0 354 62.4
Nitab4.5_0000030g0380 Nicotiana tabacum HOM05D007132 ORTHO05D009120 1.5e-126 456.8 324 65.7
HanXRQChr12g0382251 Helianthus annuus HOM05D007132 ORTHO05D009120 2.5e-126 456.1 323 65.3
Peaxi162Scf00053g00715 Petunia axillaris HOM05D007132 ORTHO05D009120 5.6e-126 454.9 348 63.2
Phvul.002G120400 Phaseolus vulgaris HOM05D007132 ORTHO05D009120 7.3e-126 454.5 277 74.7
MBI04_g06282_MAGBIO Magnolia biondii HOM05D007132 ORTHO05D009120 9.5e-126 454.1 321 68.2
PSO541G5430 Papaver somniferum HOM05D007132 ORTHO05D009120 1.2e-125 453.8 332 64.5
MSTRG.1761 Avicennia marina HOM05D007132 ORTHO05D009120 1.6e-125 453.4 333 62.5
SGA_v2.0_scaffold111G31350 Striga asiatica HOM05D007132 ORTHO05D009120 2.8e-125 452.6 391 55.8
CSS0020867 Camellia sinensis var. sinensis HOM05D007132 ORTHO05D009120 3.6e-125 452.2 326 67.5
CDE02G3577 Ceratophyllum demersum HOM05D007132 ORTHO05D009120 6.8e-124 448.0 354 60.5
Lalb_Chr05g0215041 Lupinus albus HOM05D007132 ORTHO05D009120 5.4e-121 438.3 283 74.9
ATR0568G089 Amborella trichopoda HOM05D007132 ORTHO05D009120 5.6e-118 428.3 331 61.9
THA.LOC104798521 Tarenaya hassleriana HOM05D007132 ORTHO05D009120 1.4e-116 423.7 330 59.1
AUR62023023 Chenopodium quinoa HOM05D007132 ORTHO05D009120 2.3e-116 422.9 321 63.6
AUR62043353 Chenopodium quinoa HOM05D007132 ORTHO05D009120 2.3e-116 422.9 321 63.6
BcaC01g01945 Brassica carinata HOM05D007132 ORTHO05D009120 2.0e-115 419.9 307 63.2
Sc01g0005800 Simmondsia chinensis HOM05D007132 ORTHO05D009120 1.3e-114 417.2 311 64.3
ECA233G5682 Erigeron canadensis HOM05D003740 ORTHO05D004611 6.4e-114 414.8 276 71.4
Haze_08441 Corylus avellana HOM05D007132 ORTHO05D009120 1.4e-113 413.7 283 69.3
Prupe.4G147600 Prunus persica HOM05D007132 ORTHO05D009120 3.9e-111 405.6 279 68.1
SEGI_38459 Sequoiadendron giganteum HOM05D007132 ORTHO05D009120 8.6e-111 404.4 327 57.5
Hund11034 Selenicereus undatus HOM05D007132 ORTHO05D009120 2.6e-107 392.9 280 66.1
unitig_46.g18229 Utricularia gibba HOM05D007132 ORTHO05D009120 4.4e-107 392.1 327 57.8
Zm00001eb316510 Zea mays HOM05D007132 ORTHO05D009120 1.4e-105 387.1 341 57.2
Os09g0483600 Oryza sativa ssp. japonica HOM05D007132 ORTHO05D009120 3.2e-105 386.0 339 57.2
Pp3c2_13200 Physcomitrium patens HOM05D007132 ORTHO05D009120 1.3e-101 374.0 349 52.1
SMO367G0267 Selaginella moellendorffii HOM05D007132 ORTHO05D009120 2.7e-96 356.3 344 53.8
Nitab4.5_0000898g0130 Nicotiana tabacum HOM05D007132 ORTHO05D009120 8.1e-93 344.7 273 60.8
Ah.10g035250 Amaranthus hybridus HOM05D001758 ORTHO05D005969 1.1e-92 344.4 282 60.3
PSO675G1526 Papaver somniferum HOM05D007132 ORTHO05D009120 5.1e-87 325.5 248 62.9
MD10G1196200 Malus domestica HOM05D007132 ORTHO05D009120 7.9e-64 248.4 166 68.1
Cc02_g31510 Coffea canephora HOM05D007132 ORTHO05D009120 1.2e-59 234.6 145 71.0
AagrBONN_evm.TU.Sc2ySwM_344.2529 Anthoceros agrestis HOM05D007132 ORTHO05D009120 1.2e-56 224.6 277 44.4
Sp5g15660 Schrenkiella parvula HOM05D007132 ORTHO05D009120 7.9e-56 221.9 275 45.8
TAR629G3242 Trochodendron aralioides HOM05D007132 ORTHO05D009120 3.1e-52 209.9 187 55.6
TAR629G3340 Trochodendron aralioides HOM05D007132 ORTHO05D009120 5.9e-51 205.7 117 77.8
GSVIVG01036861001 Vitis vinifera HOM05D007132 ORTHO05D009120 6.5e-50 202.2 138 66.7
MCO03G301 Micromonas commoda HOM05D007132 ORTHO05D009120 2.8e-45 186.8 342 33.6
Migut.E01364 Erythranthe guttata HOM05D007132 ORTHO05D009120 4.2e-41 172.9 104 76.9
Cfa022513 Carpinus fangiana HOM05D007132 ORTHO05D009120 5.2e-39 166.0 310 33.2
PRCOL_00004459 Prasinoderma coloniale HOM05D007132 ORTHO05D009120 6.8e-31 139.0 293 31.7
Medtr5g032230 Medicago truncatula HOM05D007132 ORTHO05D009120 2.2e-29 134.0 109 64.2
Psat2g145800 Pisum sativum HOM05D007132 ORTHO05D009120 1.1e-28 131.7 68 86.8
Rhsim11G0036100 Rhododendron simsii HOM05D007132 ORTHO05D009120 1.3e-26 124.8 82 70.7
Cre03.g175750 Chlamydomonas reinhardtii HOM05D007132 ORTHO05D009120 4.2e-25 119.8 247 30.0
Lalb_Chr05g0215031 Lupinus albus HOM05D007132 ORTHO05D009120 1.3e-18 98.2 57 75.4
Nitab4.5_0000480g0030 Nicotiana tabacum HOM05D007132 ORTHO05D009120 1.9e-17 94.4 76 59.2
Haze_08440 Corylus avellana HOM05D000433 ORTHO05D000443 4.7e-16 89.7 52 73.1
ECA233G0260 Erigeron canadensis HOM05D004419 ORTHO05D005480 9.8e-14 82.0 275 25.5
Cfa009704 Carpinus fangiana HOM05D004419 ORTHO05D005480 6.4e-13 79.3 274 25.5
Ciclev10015488m.g Citrus clementina HOM05D004419 ORTHO05D005480 1.1e-12 78.6 280 25.4
Haze_23057 Corylus avellana HOM05D004419 ORTHO05D005480 1.1e-12 78.6 274 25.5
Lsat_1_v5_gn_6_50061 Lactuca sativa HOM05D004419 ORTHO05D005480 1.4e-12 78.2 273 23.8
Haze_23052 Corylus avellana HOM05D004419 ORTHO05D005480 1.9e-12 77.8 274 25.5
AT3G20810 Arabidopsis thaliana HOM05D004419 ORTHO05D005480 3.2e-12 77.0 282 24.8
Carub.0003s2077 Capsella rubella HOM05D004419 ORTHO05D005480 1.2e-11 75.1 285 23.5
CDE11G0272 Ceratophyllum demersum HOM05D000435 ORTHO05D000430 1.6e-11 74.7 101 40.6
CsaV3_1G042600 Cucumis sativus L. HOM05D004419 ORTHO05D005480 1.6e-11 74.7 273 24.2
HanXRQChr02g0056491 Helianthus annuus HOM05D004419 ORTHO05D005480 2.0e-11 74.3 275 24.4
FAN13G1029 Fragaria x ananassa HOM05D007132 ORTHO05D009181 2.7e-11 73.9 177 36.2
MD03G1020700 Malus domestica HOM05D004419 ORTHO05D005480 2.7e-11 73.9 276 22.5
Pp3c17_10850 Physcomitrium patens HOM05D004419 ORTHO05D005480 2.7e-11 73.9 310 21.9
MELO3C015209.2 Cucumis melo HOM05D004419 ORTHO05D005480 6.0e-11 72.8 278 24.5
CSS0021936 Camellia sinensis var. sinensis HOM05D004419 ORTHO05D005480 7.8e-11 72.4 273 22.7
Sp6g24570 Schrenkiella parvula HOM05D004978 ORTHO05D005621 7.8e-11 72.4 310 24.5
Ah.04g161770 Amaranthus hybridus HOM05D004419 ORTHO05D005480 1.0e-10 72.0 272 24.3
THA.LOC104816908 Tarenaya hassleriana HOM05D004419 ORTHO05D005480 1.0e-10 72.0 275 22.9
ATR0605G084 Amborella trichopoda HOM05D004419 ORTHO05D005480 1.3e-10 71.6 262 25.2
CANSAT54G1224 Cannabis sativa HOM05D004419 ORTHO05D005480 1.7e-10 71.2 277 23.5
Sed0001509 Sechium edule HOM05D004419 ORTHO05D005480 2.3e-10 70.9 279 24.0
FAN02G3822 Fragaria x ananassa HOM05D007132 ORTHO05D009120 3.0e-10 70.5 93 44.1
Prupe.6G015700 Prunus persica HOM05D004419 ORTHO05D005480 3.0e-10 70.5 276 22.5
Hund22076 Selenicereus undatus HOM05D004419 ORTHO05D005480 3.0e-10 70.5 283 24.0
Aa31LG8G7630 Aethionema arabicum HOM05D004419 ORTHO05D005480 3.9e-10 70.1 285 23.5
CARHR193040 Cardamine hirsuta HOM05D004978 ORTHO05D005621 5.0e-10 69.7 307 23.1
Migut.D00562 Erythranthe guttata HOM05D004419 ORTHO05D005480 5.0e-10 69.7 282 25.5
Thecc.09G224700 Theobroma cacao HOM05D004419 ORTHO05D005480 1.1e-09 68.6 273 23.4
Ah.06g193530 Amaranthus hybridus HOM05D004419 ORTHO05D005480 1.5e-09 68.2 266 24.8
Aqoxy2G00106 Aquilegia oxysepala HOM05D004419 ORTHO05D005480 1.9e-09 67.8 275 24.7
Nn7g36075 Nelumbo nucifera HOM05D004419 ORTHO05D005480 1.9e-09 67.8 275 24.4
AL3G34730 Arabidopsis lyrata HOM05D004419 ORTHO05D005480 2.5e-09 67.4 298 23.2
Thhalv10013262m.g Eutrema salsugineum HOM05D004978 ORTHO05D005621 2.5e-09 67.4 302 23.8
Phvul.007G175000 Phaseolus vulgaris HOM05D004978 ORTHO05D005621 2.5e-09 67.4 318 22.6
vmacro12711 Vaccinium macrocarpon HOM05D004419 ORTHO05D005480 2.5e-09 67.4 304 23.4
EL10Ac4g10313 Beta vulgaris HOM05D004419 ORTHO05D005480 3.3e-09 67.0 279 24.4
Lj3g0003248 Lotus japonicus HOM05D004419 ORTHO05D005480 3.3e-09 67.0 279 24.0
AT5G19840 Arabidopsis thaliana HOM05D004978 ORTHO05D005621 4.3e-09 66.6 308 22.7
A03p09660 Brassica napus HOM05D004978 ORTHO05D005621 4.3e-09 66.6 156 26.9
BraA03t10282Z Brassica rapa HOM05D004978 ORTHO05D005621 4.3e-09 66.6 156 26.9
CANSAT25G0263 Cannabis sativa HOM05D004978 ORTHO05D005621 7.3e-09 65.9 311 22.8
CBR_g68529 Chara braunii HOM05D004419 ORTHO05D005480 1.2e-08 65.1 284 22.5
SMO367G0146 Selaginella moellendorffii HOM05D004978 ORTHO05D005621 1.2e-08 65.1 284 23.9
PSO384G0662 Papaver somniferum HOM05D004419 ORTHO05D005480 1.6e-08 64.7 281 23.1
BcaB01g04842 Brassica carinata HOM05D004978 ORTHO05D005621 3.6e-08 63.5 307 22.8
Eucgr.K03324 Eucalyptus grandis HOM05D004978 ORTHO05D005621 3.6e-08 63.5 142 31.0
Mapoly0061s0019 Marchantia polymorpha HOM05D002457 ORTHO05D008732 3.6e-08 63.5 274 24.5
SMO343G0029 Selaginella moellendorffii HOM05D004978 ORTHO05D005621 3.6e-08 63.5 142 27.5
Os08g0508500 Oryza sativa ssp. japonica HOM05D004419 ORTHO05D005480 4.7e-08 63.2 271 21.8
Aa31LG9G14570 Aethionema arabicum HOM05D004978 ORTHO05D005621 6.2e-08 62.8 156 26.9
Glyma.12G055000 Glycine max HOM05D004419 ORTHO05D005480 6.2e-08 62.8 274 24.1
Cfa024691 Carpinus fangiana HOM05D003208 ORTHO05D005480 1.1e-07 62.0 305 24.9
Eucgr.J00814 Eucalyptus grandis HOM05D004419 ORTHO05D005480 1.1e-07 62.0 271 22.9
C03p11220 Brassica napus HOM05D004978 ORTHO05D005621 1.4e-07 61.6 305 21.3
SMO364G0845 Selaginella moellendorffii HOM05D004419 ORTHO05D005480 1.4e-07 61.6 280 21.1
Pp3c5_1010 Physcomitrium patens HOM05D004419 ORTHO05D005480 4.0e-07 60.1 140 27.1
AL6G31360 Arabidopsis lyrata HOM05D004978 ORTHO05D005621 6.8e-07 59.3 310 23.2
Mapoly0003s0071 Marchantia polymorpha HOM05D004978 ORTHO05D005621 6.8e-07 59.3 338 21.6
BcaB01g04828 Brassica carinata HOM05D004978 ORTHO05D005621 8.9e-07 58.9 305 21.0
Rhsim11G0036200 Rhododendron simsii HOM05D007132 ORTHO05D009120 8.9e-07 58.9 41 65.9
BolC3t13593H Brassica oleracea HOM05D004978 ORTHO05D005621 1.5e-06 58.2 305 21.0
Nitab4.5_0012842g0010 Nicotiana tabacum HOM05D002457 ORTHO05D008732 2.6e-06 57.4 261 24.9
HPP92_011163 Vanilla planifolia HOM05D002457 ORTHO05D005750 7.5e-06 55.8 137 30.7
AL2G38630 Arabidopsis lyrata HOM05D002457 ORTHO05D005750 9.8e-06 55.5 129 27.9
CiPaw.07G177900 Carya illinoinensis HOM05D002457 ORTHO05D005750 9.8e-06 55.5 169 26.0
Lsat_1_v5_gn_2_121640 Lactuca sativa HOM05D002457 ORTHO05D008732 9.8e-06 55.5 261 22.6
SGA_v2.0_scaffold28G11909 Striga asiatica HOM05D002457 ORTHO05D005750 9.8e-06 55.5 188 26.6


User provided reference genes

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