Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G5230 Trifolium pratense HOM05D005866 ORTHO05D007078 1.2e-125 453.4 264 100.0
Medtr4g015010 Medicago truncatula HOM05D005866 ORTHO05D007078 5.0e-103 378.3 264 84.8
Psat7g247600 Pisum sativum HOM05D005866 ORTHO05D007078 3.7e-90 335.5 264 69.3
Lj3g0009346 Lotus japonicus HOM05D005866 ORTHO05D007078 3.5e-64 249.2 260 57.3
Lalb_Chr07g0193301 Lupinus albus HOM05D005866 ORTHO05D007078 8.1e-53 211.5 262 51.5
Phvul.010G008600 Phaseolus vulgaris HOM05D005866 ORTHO05D007078 8.1e-53 211.5 260 60.0
arahy.Tifrunner.gnm1.ann1.T33YJ3 Arachis hypogaea HOM05D005866 ORTHO05D007078 1.5e-51 207.2 266 49.6
arahy.Tifrunner.gnm1.ann1.F83RTD Arachis hypogaea HOM05D005866 ORTHO05D007078 5.8e-51 205.3 266 49.2
VMungo0331G1214 Vigna mungo HOM05D005866 ORTHO05D007078 7.6e-51 204.9 260 59.2
TPR.G1580 Trifolium pratense HOM05D005866 ORTHO05D007078 1.7e-50 203.8 253 50.6
Glyma.07G145800 Glycine max HOM05D005866 ORTHO05D007078 1.7e-47 193.7 252 49.2
arahy.Tifrunner.gnm1.ann1.Q1H550 Arachis hypogaea HOM05D005866 ORTHO05D007078 3.9e-47 192.6 254 52.0
Glyma.18G197300 Glycine max HOM05D005866 ORTHO05D007078 3.9e-47 192.6 257 50.6
Medtr7g067000 Medicago truncatula HOM05D005866 ORTHO05D007078 3.9e-47 192.6 253 49.8
Psat3g131120 Pisum sativum HOM05D005866 ORTHO05D007078 6.6e-47 191.8 259 48.6
Ca_07614_v3 Cicer arietinum L. HOM05D005866 ORTHO05D007078 3.6e-45 186.0 242 50.4
Lj1g0011685 Lotus japonicus HOM05D005866 ORTHO05D007078 8.1e-45 184.9 255 49.8
Potri.006G096700 Populus trichocarpa HOM05D005866 ORTHO05D007078 8.1e-45 184.9 271 46.1
CiPaw.09G206400 Carya illinoinensis HOM05D005866 ORTHO05D007078 1.8e-44 183.7 253 54.9
Dinv14530 Davidia involucrata HOM05D005866 ORTHO05D007078 2.4e-44 183.3 263 52.9
Dinv35509 Davidia involucrata HOM05D005866 ORTHO05D007078 2.4e-44 183.3 263 52.9
arahy.Tifrunner.gnm1.ann1.LP8IIZ Arachis hypogaea HOM05D005866 ORTHO05D007078 6.8e-44 181.8 253 49.0
Duzib128G1899 Durio zibethinus HOM05D005866 ORTHO05D007078 8.9e-44 181.4 266 53.4
VMungo1383G0141 Vigna mungo HOM05D005866 ORTHO05D007078 8.9e-44 181.4 253 49.0
Glyma.03G077300 Glycine max HOM05D005866 ORTHO05D007078 1.2e-43 181.0 262 56.5
Thecc.05G021700 Theobroma cacao HOM05D005866 ORTHO05D007078 1.7e-42 177.2 266 51.5
Aa31LG3G1580 Aethionema arabicum HOM05D005866 ORTHO05D007078 2.2e-42 176.8 258 45.7
Sabra06G0074300 Salix brachista HOM05D005866 ORTHO05D007078 4.9e-42 175.6 273 51.6
Phvul.008G107300 Phaseolus vulgaris HOM05D005866 ORTHO05D007078 6.4e-42 175.3 253 51.0
arahy.Tifrunner.gnm1.ann1.QNAF0W Arachis hypogaea HOM05D005866 ORTHO05D007078 7.1e-41 171.8 253 47.4
PGR031G2542 Punica granatum HOM05D005866 ORTHO05D007078 2.1e-40 170.2 257 51.8
Gohir.D01G215200 Gossypium hirsutum HOM05D005866 ORTHO05D007078 2.7e-40 169.9 266 44.0
Carub.0003s0821 Capsella rubella HOM05D005866 ORTHO05D007078 6.0e-40 168.7 248 53.6
Thhalv10021354m.g Eutrema salsugineum HOM05D005866 ORTHO05D007078 3.9e-39 166.0 251 52.6
Lj2C80T14 Lonicera japonica HOM05D005866 ORTHO05D007078 5.1e-39 165.6 271 41.7
BcaC09g48050 Brassica carinata HOM05D005866 ORTHO05D007078 6.6e-39 165.2 252 53.6
CsaV3_4G026010 Cucumis sativus L. HOM05D005866 ORTHO05D007078 8.7e-39 164.9 252 45.2
Gohir.A01G225500 Gossypium hirsutum HOM05D005866 ORTHO05D007078 1.1e-38 164.5 266 51.5
BraA01t04319Z Brassica rapa HOM05D005866 ORTHO05D007078 1.9e-38 163.7 237 44.3
TWI74G1551 Tripterygium wilfordii HOM05D005866 ORTHO05D007078 3.3e-38 162.9 253 51.0
BolC1t05477H Brassica oleracea HOM05D005866 ORTHO05D007078 9.6e-38 161.4 246 52.4
Manes.09G102400 Manihot esculenta HOM05D005866 ORTHO05D007078 1.3e-37 161.0 263 51.3
AL3G20110 Arabidopsis lyrata HOM05D005866 ORTHO05D007078 1.6e-37 160.6 247 51.4
TAR623G0986 Trochodendron aralioides HOM05D005866 ORTHO05D007078 1.6e-37 160.6 263 47.1
AT3G09050 Arabidopsis thaliana HOM05D005866 ORTHO05D007078 2.1e-37 160.2 256 52.0
BcaC09g48005 Brassica carinata HOM05D005866 ORTHO05D007078 2.1e-37 160.2 220 55.9
Ciclev10012537m.g Citrus clementina HOM05D005866 ORTHO05D007078 6.2e-37 158.7 252 51.2
ClCG04G007220 Citrullus lanatus HOM05D005866 ORTHO05D007078 8.1e-37 158.3 210 54.3
A05p39790 Brassica napus HOM05D005866 ORTHO05D007078 1.1e-36 157.9 261 51.3
BraA05t22763Z Brassica rapa HOM05D005866 ORTHO05D007078 1.1e-36 157.9 261 51.3
vmacro08602 Vaccinium macrocarpon HOM05D005866 ORTHO05D007078 1.1e-36 157.9 252 49.6
BcaC05g29639 Brassica carinata HOM05D005866 ORTHO05D007078 1.4e-36 157.5 237 54.0
CARHR083410 Cardamine hirsuta HOM05D005866 ORTHO05D007078 1.4e-36 157.5 253 51.4
Sp3g07500 Schrenkiella parvula HOM05D005866 ORTHO05D007078 1.8e-36 157.1 255 50.2
Cpa.g.sc56.117 Carica papaya HOM05D005866 ORTHO05D007078 2.4e-36 156.8 253 50.6
C05p58830 Brassica napus HOM05D005866 ORTHO05D007078 3.1e-36 156.4 226 55.3
BolC5t34535H Brassica oleracea HOM05D005866 ORTHO05D007078 4.0e-36 156.0 218 56.9
ECA247G0127 Erigeron canadensis HOM05D005866 ORTHO05D007078 4.0e-36 156.0 212 43.4
Sed0005881 Sechium edule HOM05D005866 ORTHO05D007078 4.0e-36 156.0 224 51.8
GSVIVG01034004001 Vitis vinifera HOM05D000012 ORTHO05D000567 4.0e-36 156.0 252 49.2
CAN.G1297.4 Capsicum annuum HOM05D005866 ORTHO05D007078 6.9e-36 155.2 255 51.8
MELO3C003227.2 Cucumis melo HOM05D005866 ORTHO05D007078 6.9e-36 155.2 208 53.8
AUR62042946 Chenopodium quinoa HOM05D005866 ORTHO05D007078 9.0e-36 154.8 264 40.5
Aqoxy1G00701 Aquilegia oxysepala HOM05D005866 ORTHO05D007078 1.2e-35 154.5 242 40.9
Sc01g0006840 Simmondsia chinensis HOM05D005866 ORTHO05D007078 3.4e-35 152.9 252 52.8
FAN09G2814 Fragaria x ananassa HOM05D000012 ORTHO05D007078 4.5e-35 152.5 252 46.0
unitig_578.g15896 Utricularia gibba HOM05D005866 ORTHO05D007078 5.8e-35 152.1 266 48.5
COL.COLO4_14593 Corchorus olitorius HOM05D005866 ORTHO05D007078 7.6e-35 151.8 266 48.9
Nn2g11373 Nelumbo nucifera HOM05D005866 ORTHO05D007078 7.6e-35 151.8 241 51.9
CSS0007949 Camellia sinensis var. sinensis HOM05D005866 ORTHO05D007078 9.9e-35 151.4 268 47.8
CSS0025068 Camellia sinensis var. sinensis HOM05D005866 ORTHO05D007078 9.9e-35 151.4 268 47.8
arahy.Tifrunner.gnm1.ann1.6JA19R Arachis hypogaea HOM05D005866 ORTHO05D007078 1.3e-34 151.0 225 47.6
Sopen10g034540 Solanum pennellii HOM05D005866 ORTHO05D007078 1.7e-34 150.6 237 53.6
PGSC0003DMG400011090 Solanum tuberosum HOM05D005866 ORTHO05D007078 1.7e-34 150.6 237 53.6
Nitab4.5_0004912g0060 Nicotiana tabacum HOM05D005866 ORTHO05D007078 4.9e-34 149.1 201 56.7
Lsat_1_v5_gn_9_36061 Lactuca sativa HOM05D005866 ORTHO05D007078 8.4e-34 148.3 268 46.3
Hund02698 Selenicereus undatus HOM05D005866 ORTHO05D007078 1.1e-33 147.9 288 38.5
Eucgr.B02792 Eucalyptus grandis HOM05D005866 ORTHO05D007078 2.4e-33 146.7 274 44.5
Haze_20956 Corylus avellana HOM05D005866 ORTHO05D007078 4.2e-33 146.0 263 49.8
THA.LOC104816219 Tarenaya hassleriana HOM05D005866 ORTHO05D007078 4.2e-33 146.0 240 53.3
FvH4_6g11980 Fragaria vesca HOM05D005866 ORTHO05D007078 1.2e-32 144.4 252 44.8
MD04G1147400 Malus domestica HOM05D005866 ORTHO05D007078 1.2e-32 144.4 271 39.5
Prupe.6G271100 Prunus persica HOM05D000012 ORTHO05D000567 1.6e-32 144.1 252 46.8
FAN05G0379 Fragaria x ananassa HOM05D000012 ORTHO05D000567 2.1e-32 143.7 252 49.2
FAN14G3397 Fragaria x ananassa HOM05D000012 ORTHO05D000567 2.1e-32 143.7 213 47.9
FAN14G3518 Fragaria x ananassa HOM05D005866 ORTHO05D007078 2.1e-32 143.7 253 40.3
AUR62025814 Chenopodium quinoa HOM05D005866 ORTHO05D007078 4.6e-32 142.5 248 39.1
Atru.chr8.2203 Acer truncatum HOM05D005866 ORTHO05D007078 7.9e-32 141.7 253 41.5
Peaxi162Scf00141g00718 Petunia axillaris HOM05D005866 ORTHO05D007078 1.3e-31 141.0 273 47.3
FAN02G1355 Fragaria x ananassa HOM05D005866 ORTHO05D007078 5.1e-31 139.0 252 44.0
DCAR_015452 Daucus carota HOM05D005866 ORTHO05D007078 1.1e-30 137.9 256 47.3
Gorai.002G261300 Gossypium raimondii HOM05D005866 ORTHO05D007078 1.5e-30 137.5 266 48.1
Solyc10g085080.3 Solanum lycopersicum HOM05D005866 ORTHO05D007078 1.9e-30 137.1 253 49.8
Ah.12g060060 Amaranthus hybridus HOM05D005866 ORTHO05D007078 2.1e-29 133.7 266 44.0
BcaC09g48006 Brassica carinata HOM05D005866 ORTHO05D007078 3.6e-29 132.9 220 40.9
CDE03G0505 Ceratophyllum demersum HOM05D005866 ORTHO05D007078 1.1e-28 131.3 237 49.8
Nitab4.5_0000008g0810 Nicotiana tabacum HOM05D005866 ORTHO05D007078 1.8e-28 130.6 237 48.9
Nitab4.5_0000652g0170 Nicotiana tabacum HOM05D005866 ORTHO05D007078 4.0e-28 129.4 246 49.2
ECA247G1841 Erigeron canadensis HOM05D005866 ORTHO05D007078 3.4e-27 126.3 157 46.5
Sopen09g007090 Solanum pennellii HOM05D005866 ORTHO05D007078 3.4e-27 126.3 246 47.6
MSTRG.5595 Avicennia marina HOM05D005866 ORTHO05D007078 7.6e-27 125.2 263 43.7
Nitab4.5_0001837g0050 Nicotiana tabacum HOM05D005866 ORTHO05D007078 2.2e-26 123.6 242 46.3
PSO384G0902 Papaver somniferum HOM05D005866 ORTHO05D007078 8.4e-26 121.7 227 47.1
TAR633G2503 Trochodendron aralioides HOM05D005866 ORTHO05D007078 8.4e-26 121.7 129 52.7
CANSAT35G0638 Cannabis sativa HOM05D005866 ORTHO05D007078 1.4e-25 120.9 269 46.1
CAN.G338.58 Capsicum annuum HOM05D005866 ORTHO05D007078 3.2e-25 119.8 276 43.5
Cc06_g01630 Coffea canephora HOM05D005866 ORTHO05D007078 2.1e-24 117.1 236 44.9
PGSC0003DMG400020319 Solanum tuberosum HOM05D005866 ORTHO05D007078 7.9e-24 115.2 276 43.1
SGA_v2.0_scaffold85G26760 Striga asiatica HOM05D005866 ORTHO05D007078 1.0e-23 114.8 141 44.7
Lj2P1203T18 Lonicera japonica HOM05D005866 ORTHO05D007078 5.1e-23 112.5 149 45.6
Zm00001eb367320 Zea mays HOM05D005866 ORTHO05D007078 6.7e-23 112.1 248 37.5
Peaxi162Scf00009g01923 Petunia axillaris HOM05D005866 ORTHO05D007078 9.6e-22 108.2 271 45.0
Solyc09g014215.2 Solanum lycopersicum HOM05D005866 ORTHO05D007078 2.1e-21 107.1 279 42.3
Actinidia05342 Actinidia chinensis HOM05D005866 ORTHO05D007078 6.2e-21 105.5 181 47.0
Migut.J00221 Erythranthe guttata HOM05D005866 ORTHO05D007078 8.1e-21 105.1 241 46.9
ATR0618G104 Amborella trichopoda HOM05D005866 ORTHO05D007078 2.4e-20 103.6 126 46.8
Os01g0853000 Oryza sativa ssp. japonica HOM05D005866 ORTHO05D007078 3.1e-20 103.2 254 36.2
RcHm_v2.0_Chr3g0463811 Rosa chinensis HOM05D005866 ORTHO05D007078 6.9e-20 102.1 129 48.1
PSO339G5866 Papaver somniferum HOM05D005866 ORTHO05D007078 2.6e-19 100.1 193 47.7
EL10Ac6g13875 Beta vulgaris HOM05D005866 ORTHO05D007078 1.3e-18 97.8 116 47.4
AagrBONN_evm.TU.Sc2ySwM_117.2545 Anthoceros agrestis HOM05D005866 ORTHO05D007078 3.4e-11 73.2 228 25.0
SEGI_33363 Sequoiadendron giganteum HOM05D005866 ORTHO05D007078 3.4e-11 73.2 264 26.5
Dinv37082 Davidia involucrata HOM05D005866 ORTHO05D007078 4.5e-11 72.8 100 44.0
Pp3c5_19930 Physcomitrium patens HOM05D005866 ORTHO05D007078 1.0e-10 71.6 212 26.9
Actinidia01118 Actinidia chinensis HOM05D005866 ORTHO05D007078 1.1e-09 68.2 76 50.0
Mapoly0004s0086 Marchantia polymorpha HOM05D005866 ORTHO05D007078 1.9e-09 67.4 215 27.0
Lalb_Chr03g0043011 Lupinus albus HOM05D005866 ORTHO05D007078 7.9e-08 62.0 90 45.6
SEGI_17473 Sequoiadendron giganteum HOM05D005866 ORTHO05D007078 2.3e-07 60.5 241 25.3
HanXRQChr10g0287001 Helianthus annuus HOM05D005866 ORTHO05D007078 3.9e-07 59.7 80 45.0
SGA_v2.0_scaffold1443G53951 Striga asiatica HOM05D005866 ORTHO05D007078 3.3e-06 56.6 86 44.2
ATR0618G115 Amborella trichopoda HOM05D005866 ORTHO05D007078 4.3e-06 56.2 94 40.4
Mapoly0010s0127 Marchantia polymorpha HOM05D005866 ORTHO05D007078 5.7e-06 55.8 224 24.6
Actinidia01119 Actinidia chinensis HOM05D005866 ORTHO05D007078 7.4e-06 55.5 91 39.6
Pp3c20_9600 Physcomitrium patens HOM05D005866 ORTHO05D007078 9.7e-06 55.1 202 24.8


User provided reference genes

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