Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G5084 Trifolium pratense HOM05D004231 ORTHO05D004814 1.5e-204 716.1 381 100.0
TPR.G18636 Trifolium pratense HOM05D004231 ORTHO05D004814 5.6e-180 634.4 380 91.8
Psat2g000680 Pisum sativum HOM05D004231 ORTHO05D004814 2.8e-155 552.4 378 81.0
Ca_10777_v3 Cicer arietinum L. HOM05D004231 ORTHO05D004814 3.1e-154 548.9 377 81.4
Psat2g000800 Pisum sativum HOM05D004231 ORTHO05D004814 2.6e-153 545.8 378 79.4
Medtr5g099180 Medicago truncatula HOM05D004231 ORTHO05D004814 7.6e-153 544.3 382 80.9
LjContig00081g0001175 Lotus japonicus HOM05D004231 ORTHO05D004814 9.9e-145 517.3 383 76.2
CANSAT25G0301 Cannabis sativa HOM05D004231 ORTHO05D004814 1.2e-137 493.8 354 75.7
Glyma.14G001000 Glycine max HOM05D004231 ORTHO05D004814 7.6e-137 491.1 323 82.4
arahy.Tifrunner.gnm1.ann1.9M6UE0 Arachis hypogaea HOM05D004231 ORTHO05D004814 1.9e-135 486.5 356 75.8
Lalb_Chr12g0208621 Lupinus albus HOM05D004231 ORTHO05D004814 2.5e-135 486.1 376 71.5
arahy.Tifrunner.gnm1.ann1.3XUX0K Arachis hypogaea HOM05D004231 ORTHO05D004814 4.6e-134 481.9 352 76.1
Dinv14175 Davidia involucrata HOM05D004231 ORTHO05D004814 7.9e-134 481.1 351 75.2
Sed0021373 Sechium edule HOM05D004231 ORTHO05D004814 1.8e-133 479.9 333 78.1
CsaV3_7G001970 Cucumis sativus L. HOM05D004231 ORTHO05D004814 2.3e-133 479.6 342 77.5
MD10G1142000 Malus domestica HOM05D004231 ORTHO05D004814 3.9e-133 478.8 344 75.3
MELO3C015708.2 Cucumis melo HOM05D004231 ORTHO05D004814 5.1e-133 478.4 342 77.2
CiPaw.06G115200 Carya illinoinensis HOM05D004231 ORTHO05D004814 6.7e-133 478.0 343 77.3
ClCG02G003360 Citrullus lanatus HOM05D004231 ORTHO05D004814 6.7e-133 478.0 342 76.9
FvH4_2g16830 Fragaria vesca HOM05D004231 ORTHO05D004814 6.7e-133 478.0 343 75.8
Lalb_Chr07g0189301 Lupinus albus HOM05D004231 ORTHO05D004814 6.7e-133 478.0 347 74.9
QL05p043527 Quercus lobata HOM05D004231 ORTHO05D004814 1.1e-132 477.2 353 74.8
ECA233G1094 Erigeron canadensis HOM05D004231 ORTHO05D004814 1.9e-132 476.5 329 77.5
Prupe.8G180500 Prunus persica HOM05D004231 ORTHO05D004814 7.4e-132 474.6 366 72.1
RcHm_v2.0_Chr6g0280961 Rosa chinensis HOM05D004231 ORTHO05D004814 1.3e-131 473.8 343 76.1
Cfa005374 Carpinus fangiana HOM05D004231 ORTHO05D004814 1.6e-131 473.4 355 72.7
Migut.N00847 Erythranthe guttata HOM05D004231 ORTHO05D004814 1.6e-131 473.4 326 79.4
Hma1.2p1_0652F.1_g195880 Hydrangea macrophylla HOM05D004231 ORTHO05D004814 1.6e-131 473.4 345 74.5
FAN15G0610 Fragaria x ananassa HOM05D004231 ORTHO05D004814 2.1e-131 473.0 342 75.1
Sed0027682 Sechium edule HOM05D004231 ORTHO05D004814 2.1e-131 473.0 341 76.8
FAN24G0296 Fragaria x ananassa HOM05D004231 ORTHO05D004814 3.7e-131 472.2 343 75.2
PGR042G2635 Punica granatum HOM05D004231 ORTHO05D004814 4.8e-131 471.9 357 71.1
CSS0007201 Camellia sinensis var. sinensis HOM05D004231 ORTHO05D004814 6.2e-131 471.5 376 70.5
Nitab4.5_0000783g0100 Nicotiana tabacum HOM05D004231 ORTHO05D004814 8.2e-131 471.1 325 78.5
Nn7g36283 Nelumbo nucifera HOM05D004231 ORTHO05D004814 1.1e-130 470.7 344 74.1
Lsat_1_v5_gn_8_121420 Lactuca sativa HOM05D004231 ORTHO05D004814 1.4e-130 470.3 345 73.9
Oeu005953.1 Olea europaea HOM05D004231 ORTHO05D004814 1.4e-130 470.3 326 79.1
TWI75G1214 Tripterygium wilfordii HOM05D004231 ORTHO05D004814 1.4e-130 470.3 365 69.6
FAN27G2171 Fragaria x ananassa HOM05D004231 ORTHO05D004814 4.0e-130 468.8 346 73.7
SalBow7G0905 Salvia bowleyana HOM05D004231 ORTHO05D004814 4.0e-130 468.8 354 75.1
Ciclev10028700m.g Citrus clementina HOM05D004231 ORTHO05D004814 9.0e-130 467.6 343 73.8
Actinidia17992 Actinidia chinensis HOM05D004231 ORTHO05D004814 1.5e-129 466.8 341 76.2
Phvul.008G292300 Phaseolus vulgaris HOM05D004231 ORTHO05D004814 1.5e-129 466.8 372 71.5
SGA_v2.0_scaffold36G14389 Striga asiatica HOM05D004231 ORTHO05D004814 1.5e-129 466.8 367 71.9
MSTRG.25000 Avicennia marina HOM05D004231 ORTHO05D004814 2.6e-129 466.1 332 78.0
SGA_v2.0_scaffold172G39001 Striga asiatica HOM05D004231 ORTHO05D004814 4.5e-129 465.3 330 77.3
Sabra04G0139300 Salix brachista HOM05D004231 ORTHO05D004814 2.9e-128 462.6 354 72.6
Potri.009G168400 Populus trichocarpa HOM05D004231 ORTHO05D004814 1.1e-127 460.7 344 74.1
Manes.01G017200 Manihot esculenta HOM05D004231 ORTHO05D004814 2.5e-127 459.5 343 73.5
ECA236G1252 Erigeron canadensis HOM05D000103 ORTHO05D000049 4.2e-127 458.8 322 78.0
CiPaw.05G093400 Carya illinoinensis HOM05D004231 ORTHO05D004814 9.3e-127 457.6 336 75.9
HanXRQChr16g0515121 Helianthus annuus HOM05D004231 ORTHO05D004814 1.2e-126 457.2 325 76.3
Potri.004G207000 Populus trichocarpa HOM05D004231 ORTHO05D004814 1.6e-126 456.8 344 74.1
Peaxi162Scf00362g00110 Petunia axillaris HOM05D004231 ORTHO05D004814 2.1e-126 456.4 332 74.7
AL3G50130 Arabidopsis lyrata HOM05D004231 ORTHO05D004814 2.7e-126 456.1 370 68.1
CARHR293610 Cardamine hirsuta HOM05D004231 ORTHO05D004814 2.7e-126 456.1 370 68.4
BcaB03g16474 Brassica carinata HOM05D004231 ORTHO05D004814 3.5e-126 455.7 379 67.5
Sopen04g003940 Solanum pennellii HOM05D004231 ORTHO05D004814 3.5e-126 455.7 325 75.4
Sp3g30610 Schrenkiella parvula HOM05D004231 ORTHO05D004814 4.6e-126 455.3 357 69.7
Solyc04g008760.3 Solanum lycopersicum HOM05D004231 ORTHO05D004814 7.9e-126 454.5 325 75.1
PGSC0003DMG400025309 Solanum tuberosum HOM05D004231 ORTHO05D004814 7.9e-126 454.5 325 75.1
AT2G17265 Arabidopsis thaliana HOM05D004231 ORTHO05D004814 1.0e-125 454.1 370 67.8
BcaC01g02941 Brassica carinata HOM05D004231 ORTHO05D004814 1.0e-125 454.1 377 66.6
Thhalv10022738m.g Eutrema salsugineum HOM05D004231 ORTHO05D004814 3.0e-125 452.6 357 68.9
C09p13290 Brassica napus HOM05D004231 ORTHO05D004814 3.9e-125 452.2 357 69.2
Carub.0003s3121 Capsella rubella HOM05D004231 ORTHO05D004814 5.1e-125 451.8 357 68.9
Sc08g0002160 Simmondsia chinensis HOM05D004231 ORTHO05D004814 6.7e-125 451.4 346 71.7
BolC9t54222H Brassica oleracea HOM05D004231 ORTHO05D004814 8.7e-125 451.1 357 68.9
C03p58080 Brassica napus HOM05D004231 ORTHO05D004814 1.1e-124 450.7 368 67.9
BolC3t18081H Brassica oleracea HOM05D004231 ORTHO05D004814 1.1e-124 450.7 368 67.9
BraA06t26345Z Brassica rapa HOM05D004231 ORTHO05D004814 1.9e-124 449.9 384 65.9
CAN.G5871.1 Capsicum annuum HOM05D004231 ORTHO05D004814 1.9e-124 449.9 371 67.7
A09p11260 Brassica napus HOM05D004231 ORTHO05D004814 3.3e-124 449.1 357 68.3
Nn2g15251 Nelumbo nucifera HOM05D004231 ORTHO05D004814 3.3e-124 449.1 365 69.6
A07p03760 Brassica napus HOM05D004231 ORTHO05D004814 4.3e-124 448.7 357 68.6
BraA07t28164Z Brassica rapa HOM05D004231 ORTHO05D004814 4.3e-124 448.7 357 68.6
BraA09t36767Z Brassica rapa HOM05D004231 ORTHO05D004814 4.3e-124 448.7 357 68.3
BcaC04g22982 Brassica carinata HOM05D004231 ORTHO05D004814 5.7e-124 448.4 357 68.9
BcaB03g16478 Brassica carinata HOM05D004231 ORTHO05D004814 7.4e-124 448.0 357 68.6
BcaB07g31737 Brassica carinata HOM05D004231 ORTHO05D004814 7.4e-124 448.0 326 73.9
BolC7t41016H Brassica oleracea HOM05D004231 ORTHO05D004814 7.4e-124 448.0 357 68.6
CSS0030147 Camellia sinensis var. sinensis HOM05D004231 ORTHO05D004814 7.4e-124 448.0 355 69.6
C07p06030 Brassica napus HOM05D004231 ORTHO05D004814 9.7e-124 447.6 357 68.6
Duzib052G0175 Durio zibethinus HOM05D004231 ORTHO05D004814 1.6e-123 446.8 343 71.1
A06p34120 Brassica napus HOM05D004231 ORTHO05D004814 2.8e-123 446.0 382 65.7
Sopen01g054320 Solanum pennellii HOM05D004231 ORTHO05D004814 1.8e-122 443.4 325 73.2
EL10Ac9g21537 Beta vulgaris HOM05D004231 ORTHO05D004814 2.4e-122 443.0 365 69.0
RhsimUnG0022900 Rhododendron simsii HOM05D004231 ORTHO05D004814 2.4e-122 443.0 371 67.1
PSO675G1855 Papaver somniferum HOM05D004231 ORTHO05D004814 3.1e-122 442.6 334 72.5
Cc11_g00240 Coffea canephora HOM05D004231 ORTHO05D004814 4.1e-122 442.2 370 68.4
AUR62013177 Chenopodium quinoa HOM05D004231 ORTHO05D004814 9.0e-122 441.0 318 76.4
PSO541G6356 Papaver somniferum HOM05D004231 ORTHO05D004814 9.0e-122 441.0 341 71.0
PSO063G5124 Papaver somniferum HOM05D004231 ORTHO05D004814 1.5e-121 440.3 365 67.9
unitig_0.g2083 Utricularia gibba HOM05D004231 ORTHO05D004814 1.5e-121 440.3 337 73.6
DCAR_006270 Daucus carota HOM05D004231 ORTHO05D004814 4.5e-121 438.7 325 73.8
PGSC0003DMG400014663 Solanum tuberosum HOM05D000109 ORTHO05D004814 5.9e-121 438.3 352 67.9
Thecc.02G146400 Theobroma cacao HOM05D004231 ORTHO05D004814 7.7e-121 438.0 366 66.4
Aa31LG2G14870 Aethionema arabicum HOM05D004231 ORTHO05D004814 1.0e-120 437.6 354 68.1
Ah.01g009950 Amaranthus hybridus HOM05D004231 ORTHO05D004814 2.9e-120 436.0 326 74.2
CDE05G2018 Ceratophyllum demersum HOM05D004231 ORTHO05D004814 2.9e-120 436.0 348 67.2
PSO782G1111 Papaver somniferum HOM05D004231 ORTHO05D004814 3.8e-120 435.6 365 67.4
CDE05G1267 Ceratophyllum demersum HOM05D004231 ORTHO05D004814 5.0e-120 435.3 357 65.5
Lsat_1_v5_gn_4_71321 Lactuca sativa HOM05D004231 ORTHO05D004814 1.1e-119 434.1 373 60.6
Aqoxy1G01703 Aquilegia oxysepala HOM05D004231 ORTHO05D004814 5.5e-119 431.8 344 68.0
Nitab4.5_0008730g0040 Nicotiana tabacum HOM05D004231 ORTHO05D004814 5.1e-117 425.2 324 72.5
Carub.0007s0500 Capsella rubella HOM05D004231 ORTHO05D004814 6.7e-117 424.9 326 71.5
Nitab4.5_0000129g0030 Nicotiana tabacum HOM05D004231 ORTHO05D004814 6.7e-117 424.9 354 69.2
MBI18_g17319_MAGBIO Magnolia biondii HOM05D004231 ORTHO05D004814 4.3e-116 422.2 368 63.3
Peaxi162Scf00329g00312 Petunia axillaris HOM05D004231 ORTHO05D004814 2.4e-114 416.4 310 73.9
Gohir.A03G170800 Gossypium hirsutum HOM05D004231 ORTHO05D004814 2.5e-111 406.4 304 72.4
Gorai.005G216700 Gossypium raimondii HOM05D004231 ORTHO05D004814 1.2e-110 404.1 304 72.0
Gohir.D02G193900 Gossypium hirsutum HOM05D004231 ORTHO05D004814 2.1e-110 403.3 304 72.0
ATR0177G062 Amborella trichopoda HOM05D004231 ORTHO05D004814 1.1e-108 397.5 338 63.3
SHI25239 Sapria himalayana HOM05D004231 ORTHO05D004814 3.3e-108 396.0 357 63.0
HPP92_007738 Vanilla planifolia HOM05D004231 ORTHO05D004814 4.4e-108 395.6 379 60.4
AUR62010176 Chenopodium quinoa HOM05D004231 ORTHO05D004814 8.2e-107 391.3 318 65.4
BcaC06g36249 Brassica carinata HOM05D004231 ORTHO05D004814 1.0e-101 374.4 317 67.8
GSVIVG01023624001 Vitis vinifera HOM05D004231 ORTHO05D004814 2.6e-100 369.8 364 62.4
Pp3c5_14900 Physcomitrium patens HOM05D004231 ORTHO05D004814 1.1e-98 364.4 355 59.7
Os02g0831800 Oryza sativa ssp. japonica HOM05D004231 ORTHO05D004814 1.1e-95 354.4 331 59.2
Mapoly0173s0009 Marchantia polymorpha HOM05D004231 ORTHO05D004814 1.5e-95 354.0 346 58.1
BcaB03g16477 Brassica carinata HOM05D004231 ORTHO05D004814 2.5e-95 353.2 285 68.8
Cpa.g.sc60.14 Carica papaya HOM05D004231 ORTHO05D004814 2.7e-94 349.7 345 62.0
SMO351G0181 Selaginella moellendorffii HOM05D004231 ORTHO05D004814 1.8e-93 347.1 379 54.6
THA.LOC104807405 Tarenaya hassleriana HOM05D004231 ORTHO05D004814 5.5e-87 325.5 248 73.8
Lj9P408T30 Lonicera japonica HOM05D004231 ORTHO05D004814 3.6e-86 322.8 243 73.7
CBR_g2798 Chara braunii HOM05D004385 ORTHO05D005245 6.1e-86 322.0 339 54.3
CARHR243620 Cardamine hirsuta HOM05D004231 ORTHO05D004814 4.0e-85 319.3 278 65.8
MBI10_g41732_MAGBIO Magnolia biondii HOM05D004231 ORTHO05D004814 1.3e-83 314.3 297 55.9
Atru.chr5.3561 Acer truncatum HOM05D004231 ORTHO05D004814 6.3e-83 312.0 203 76.8
COL.COLO4_34312 Corchorus olitorius HOM05D000109 ORTHO05D000520 1.6e-81 307.4 321 55.5
Cre02.g082250 Chlamydomonas reinhardtii HOM05D004231 ORTHO05D004814 1.9e-79 300.4 348 52.6
MBI15_g18193_MAGBIO Magnolia biondii HOM05D004231 ORTHO05D004814 1.2e-76 291.2 370 51.6
ATR0810G109 Amborella trichopoda HOM05D004231 ORTHO05D004814 4.5e-73 279.3 329 52.9
SEGI_38009 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 4.6e-65 252.7 247 55.9
TAR625G1260 Trochodendron aralioides HOM05D004231 ORTHO05D004814 5.4e-58 229.2 208 61.1
Cre02.g082200 Chlamydomonas reinhardtii HOM05D004231 ORTHO05D004814 4.0e-53 213.0 208 55.3
SMO231G0001 Selaginella moellendorffii HOM05D004231 ORTHO05D004814 1.2e-46 191.4 165 58.2
Dinv20762 Davidia involucrata HOM05D004231 ORTHO05D004814 4.0e-45 186.4 128 74.2
Atru.chr5.3560 Acer truncatum HOM05D004231 ORTHO05D004814 5.6e-39 166.0 133 69.9
VMungo0331G0717 Vigna mungo HOM05D004231 ORTHO05D004814 3.8e-35 153.3 102 72.5
Sabra09G0130700 Salix brachista HOM05D004231 ORTHO05D004814 2.3e-32 144.1 164 53.0
VMungo0647G1050 Vigna mungo HOM05D004231 ORTHO05D004814 6.6e-32 142.5 97 72.2
TAR625G0010 Trochodendron aralioides HOM05D004231 ORTHO05D004814 1.1e-31 141.7 89 77.5
arahy.Tifrunner.gnm1.ann1.H05BEB Arachis hypogaea HOM05D004231 ORTHO05D004814 9.0e-29 132.1 97 69.1
Actinidia26328 Actinidia chinensis HOM05D004231 ORTHO05D004814 2.4e-26 124.0 128 54.7
BcaB08g34718 Brassica carinata HOM05D004231 ORTHO05D004814 4.6e-25 119.8 78 75.6
QL06p003747 Quercus lobata HOM05D003236 ORTHO05D003620 7.4e-23 112.5 127 47.2
unitig_747.g21541 Utricularia gibba HOM05D006537 ORTHO05D008186 1.3e-22 111.7 285 32.3
QL03p013131 Quercus lobata HOM05D004231 ORTHO05D004814 2.0e-20 104.4 106 50.9
QL08p042586 Quercus lobata HOM05D004231 ORTHO05D004814 3.8e-19 100.1 133 44.4
SEGI_19463 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 3.2e-18 97.1 105 49.5
BcaC06g34170 Brassica carinata HOM05D004231 ORTHO05D004814 2.7e-17 94.0 65 69.2
BcaB08g34717 Brassica carinata HOM05D004231 ORTHO05D004814 9.6e-15 85.5 58 69.0
MCO14G367 Micromonas commoda HOM05D004231 ORTHO05D004814 9.6e-15 85.5 273 31.1
PRCOL_00006973 Prasinoderma coloniale HOM05D004231 ORTHO05D004814 3.1e-13 80.5 140 40.7
TAR625G0853 Trochodendron aralioides HOM05D000369 ORTHO05D000253 1.9e-10 71.2 175 34.9
Lsat_1_v5_gn_2_1161 Lactuca sativa HOM05D004231 ORTHO05D004814 4.2e-10 70.1 56 60.7
AT4G35295 Arabidopsis thaliana HOM05D004231 ORTHO05D004814 7.9e-09 65.9 63 57.1
FAN23G0549 Fragaria x ananassa HOM05D004231 ORTHO05D004814 3.0e-08 63.9 78 50.0
FAN23G1162 Fragaria x ananassa HOM05D004231 ORTHO05D004814 3.0e-08 63.9 78 50.0
FAN15G0284 Fragaria x ananassa HOM05D004231 ORTHO05D004814 1.5e-07 61.6 54 61.1
FAN05G5401 Fragaria x ananassa HOM05D004231 ORTHO05D004814 2.5e-07 60.8 51 58.8
FAN07G1153 Fragaria x ananassa HOM05D004231 ORTHO05D004814 2.5e-07 60.8 43 65.1
Cre02.g082150 Chlamydomonas reinhardtii HOM05D004231 ORTHO05D004814 5.7e-07 59.7 47 59.6
SEGI_37911 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 7.4e-07 59.3 49 55.1
FvH4_3g29830 Fragaria vesca HOM05D004126 ORTHO05D004818 1.3e-06 58.5 43 65.1
FAN05G3570 Fragaria x ananassa HOM05D004231 ORTHO05D004814 6.3e-06 56.2 43 62.8


User provided reference genes

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