Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G5064 Trifolium pratense HOM05D007796 ORTHO05D009853 7.9e-35 149.8 72 100.0
Psat4g158920 Pisum sativum HOM05D007796 ORTHO05D009853 4.8e-32 140.6 72 93.1
Medtr8g028085 Medicago truncatula HOM05D007796 ORTHO05D009853 6.0e-27 123.6 68 83.8
Lj3g0021991 Lotus japonicus HOM05D007796 ORTHO05D009853 2.1e-24 115.2 72 77.8
Ca_23572_v3 Cicer arietinum L. HOM05D007796 ORTHO05D009853 1.7e-21 105.5 71 73.2
Ca_23581_v3 Cicer arietinum L. HOM05D007796 ORTHO05D009853 1.7e-21 105.5 71 73.2
arahy.Tifrunner.gnm1.ann1.M2QILT Arachis hypogaea HOM05D007796 ORTHO05D009853 1.8e-18 95.5 74 66.2
Lalb_Chr17g0342271 Lupinus albus HOM05D007796 ORTHO05D009853 2.3e-18 95.1 72 59.7
PGR083G0658 Punica granatum HOM05D007796 ORTHO05D009853 1.4e-15 85.9 72 59.7
Manes.12G058902 Manihot esculenta HOM05D007796 ORTHO05D009853 5.3e-15 84.0 72 61.1
MD16G1238500 Malus domestica HOM05D007796 ORTHO05D009853 2.6e-14 81.6 70 57.1
Eucgr.H00678 Eucalyptus grandis HOM05D007796 ORTHO05D009853 5.9e-14 80.5 55 61.8
Gohir.A07G088800 Gossypium hirsutum HOM05D007796 ORTHO05D009853 1.3e-13 79.3 72 56.9
Gohir.D07G093800 Gossypium hirsutum HOM05D007796 ORTHO05D009853 1.3e-13 79.3 72 56.9
Gorai.001G100500 Gossypium raimondii HOM05D007796 ORTHO05D009853 1.3e-13 79.3 72 56.9
Hma1.2p1_0487F.1_g163590 Hydrangea macrophylla HOM05D007796 ORTHO05D009853 1.7e-13 79.0 68 51.5
MD13G1233500 Malus domestica HOM05D007796 ORTHO05D009853 1.7e-13 79.0 70 54.3
FvH4_4g06110 Fragaria vesca HOM05D007796 ORTHO05D009853 2.2e-13 78.6 64 57.8
FAN07G1080 Fragaria x ananassa HOM05D007796 ORTHO05D009853 2.2e-13 78.6 64 57.8
FAN12G2913 Fragaria x ananassa HOM05D007796 ORTHO05D009853 2.2e-13 78.6 64 57.8
FAN17G0402 Fragaria x ananassa HOM05D007796 ORTHO05D009853 2.2e-13 78.6 64 57.8
Rhsim09G0019400 Rhododendron simsii HOM05D007796 ORTHO05D009853 3.8e-13 77.8 62 50.0
Rhsim09G0019700 Rhododendron simsii HOM05D007796 ORTHO05D009853 3.8e-13 77.8 62 50.0
CSS0002213 Camellia sinensis var. sinensis HOM05D007796 ORTHO05D009853 5.0e-13 77.4 68 51.5
CSS0009025 Camellia sinensis var. sinensis HOM05D007796 ORTHO05D009853 5.0e-13 77.4 68 51.5
Oeu022686.1 Olea europaea HOM05D007796 ORTHO05D009853 5.0e-13 77.4 62 51.6
vmacro00674 Vaccinium macrocarpon HOM05D007796 ORTHO05D009853 5.0e-13 77.4 62 50.0
CANSAT35G1173 Cannabis sativa HOM05D007796 ORTHO05D009853 6.5e-13 77.0 66 54.5
Ciclev10018341m.g Citrus clementina HOM05D007796 ORTHO05D009853 6.5e-13 77.0 57 57.9
Atru.chr6.3486 Acer truncatum HOM05D007796 ORTHO05D009853 1.1e-12 76.3 55 60.0
Actinidia27090 Actinidia chinensis HOM05D007796 ORTHO05D009853 1.1e-12 76.3 68 54.4
CiPaw.13G057300 Carya illinoinensis HOM05D007796 ORTHO05D009853 1.1e-12 76.3 72 54.2
COL.COLO4_04515 Corchorus olitorius HOM05D007796 ORTHO05D009853 1.1e-12 76.3 72 58.3
FAN22G0383 Fragaria x ananassa HOM05D007796 ORTHO05D009853 1.1e-12 76.3 64 56.2
Manes.13G057800 Manihot esculenta HOM05D007796 ORTHO05D009853 1.1e-12 76.3 72 51.4
Nn7g37568 Nelumbo nucifera HOM05D007796 ORTHO05D009853 1.4e-12 75.9 55 56.4
Prupe.1G064700 Prunus persica HOM05D007796 ORTHO05D009853 1.4e-12 75.9 61 57.4
Lsat_1_v5_gn_2_38801 Lactuca sativa HOM05D007796 ORTHO05D009853 1.9e-12 75.5 63 50.8
SalBow2G2954 Salvia bowleyana HOM05D007796 ORTHO05D009853 1.9e-12 75.5 67 50.7
TWI36G1414 Tripterygium wilfordii HOM05D007796 ORTHO05D009853 2.5e-12 75.1 70 50.0
Rhsim09G0018700 Rhododendron simsii HOM05D007796 ORTHO05D009853 3.2e-12 74.7 62 48.4
MELO3C012717.2 Cucumis melo HOM05D007796 ORTHO05D009853 4.2e-12 74.3 69 50.7
Thecc.01G204800 Theobroma cacao HOM05D007796 ORTHO05D009853 4.2e-12 74.3 72 55.6
RcHm_v2.0_Chr4g0397691 Rosa chinensis HOM05D007796 ORTHO05D009853 1.2e-11 72.8 61 55.7
MSTRG.9748 Avicennia marina HOM05D007796 ORTHO05D009853 1.6e-11 72.4 71 45.1
Migut.G01293 Erythranthe guttata HOM05D007796 ORTHO05D009853 1.6e-11 72.4 71 47.9
THA.LOC104822455 Tarenaya hassleriana HOM05D007796 ORTHO05D009853 1.6e-11 72.4 73 49.3
Cfa010674 Carpinus fangiana HOM05D005998 ORTHO05D007664 2.1e-11 72.0 55 56.4
Haze_03600 Corylus avellana HOM05D007796 ORTHO05D009853 2.1e-11 72.0 55 56.4
Nitab4.5_0000242g0120 Nicotiana tabacum HOM05D007796 ORTHO05D009853 2.7e-11 71.6 54 57.4
Nitab4.5_0012444g0010 Nicotiana tabacum HOM05D007796 ORTHO05D009853 6.1e-11 70.5 65 50.8
QL09p048026 Quercus lobata HOM05D007796 ORTHO05D009853 7.9e-11 70.1 55 58.2
CsaV3_7G027090 Cucumis sativus L. HOM05D007796 ORTHO05D009853 1.0e-10 69.7 68 55.9
Potri.014G197400 Populus trichocarpa HOM05D007796 ORTHO05D009853 1.4e-10 69.3 62 50.0
Aa31LG5G18120 Aethionema arabicum HOM05D007796 ORTHO05D009853 1.8e-10 68.9 56 51.8
Nitab4.5_0001521g0060 Nicotiana tabacum HOM05D007796 ORTHO05D009853 1.8e-10 68.9 65 49.2
PSO017G5834 Papaver somniferum HOM05D007796 ORTHO05D009853 3.9e-10 67.8 69 47.8
Phvul.010G110050 Phaseolus vulgaris HOM05D007796 ORTHO05D009853 3.9e-10 67.8 75 52.0
Sopen08g004900 Solanum pennellii HOM05D007796 ORTHO05D009853 3.9e-10 67.8 71 46.5
Carub.0003s0713 Capsella rubella HOM05D007796 ORTHO05D009853 5.1e-10 67.4 55 50.9
A05p40630 Brassica napus HOM05D007796 ORTHO05D009853 6.7e-10 67.0 55 50.9
BraA05t22794Z Brassica rapa HOM05D007796 ORTHO05D009853 6.7e-10 67.0 55 50.9
CARHR082260 Cardamine hirsuta HOM05D007796 ORTHO05D009853 6.7e-10 67.0 55 50.9
Thhalv10021850m.g Eutrema salsugineum HOM05D007796 ORTHO05D009853 8.8e-10 66.6 56 50.0
HanXRQChr12g0382011 Helianthus annuus HOM05D007796 ORTHO05D009853 1.1e-09 66.2 53 52.8
C05p59740 Brassica napus HOM05D007796 ORTHO05D009853 1.5e-09 65.9 55 49.1
Phvul.010G110100 Phaseolus vulgaris HOM05D007796 ORTHO05D009853 1.5e-09 65.9 63 54.0
AL3G18920 Arabidopsis lyrata HOM05D007796 ORTHO05D009853 2.0e-09 65.5 55 49.1
BcaC05g29552 Brassica carinata HOM05D000328 ORTHO05D000191 2.0e-09 65.5 64 46.9
BolC5t34628H Brassica oleracea HOM05D007796 ORTHO05D009853 2.0e-09 65.5 64 46.9
Sp3g06500 Schrenkiella parvula HOM05D007796 ORTHO05D009853 2.0e-09 65.5 55 50.9
MBI07_g07943_MAGBIO Magnolia biondii HOM05D007796 ORTHO05D009853 3.3e-09 64.7 82 43.9
AT3G07568 Arabidopsis thaliana HOM05D007796 ORTHO05D009853 4.3e-09 64.3 55 47.3
Cpa.g.sc8.20 Carica papaya HOM05D007796 ORTHO05D009853 4.3e-09 64.3 55 49.1
ATR0743G114 Amborella trichopoda HOM05D007796 ORTHO05D009853 7.4e-09 63.5 64 45.3
Peaxi162Scf00075g01546 Petunia axillaris HOM05D007796 ORTHO05D009853 7.4e-09 63.5 66 47.0
unitig_0.g2392 Utricularia gibba HOM05D007796 ORTHO05D009853 7.4e-09 63.5 57 42.1
GSVIVG01004106001 Vitis vinifera HOM05D007796 ORTHO05D009853 2.2e-08 62.0 68 44.1
DCAR_005469 Daucus carota HOM05D007796 ORTHO05D009853 2.8e-08 61.6 62 43.5
Glyma.07G059400 Glycine max HOM05D007796 ORTHO05D009853 6.3e-08 60.5 71 43.7
Sed0024779 Sechium edule HOM05D007796 ORTHO05D009853 3.1e-07 58.2 68 48.5
CiPaw.14G044700 Carya illinoinensis HOM05D007796 ORTHO05D009853 2.0e-06 55.5 61 44.3
Oeu035188.1 Olea europaea HOM05D007796 ORTHO05D009853 2.0e-06 55.5 41 51.2
SHI10202 Sapria himalayana HOM05D007796 ORTHO05D009853 2.6e-06 55.1 36 58.3
EL10Ac3g06021 Beta vulgaris HOM05D007796 ORTHO05D009853 3.4e-06 54.7 63 39.7
AUR62023828 Chenopodium quinoa HOM05D007796 ORTHO05D009853 5.9e-06 53.9 65 38.5
Cc03_g12300 Coffea canephora HOM05D007796 ORTHO05D009853 5.9e-06 53.9 60 41.7


User provided reference genes

Program Settings