Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G5048 Trifolium pratense HOM05D003877 ORTHO05D004647 6.1e-33 143.7 78 100.0
TPR.G30156 Trifolium pratense HOM05D003877 ORTHO05D004647 9.8e-31 136.3 78 96.2
Ca_15152_v3 Cicer arietinum L. HOM05D003877 ORTHO05D004647 2.7e-20 101.7 76 68.4
Psat5g130920 Pisum sativum HOM05D003877 ORTHO05D004647 2.9e-19 98.2 74 71.6
Medtr3g071580 Medicago truncatula HOM05D003877 ORTHO05D004647 6.6e-19 97.1 72 70.8
Lj6g0018000 Lotus japonicus HOM05D003877 ORTHO05D004647 4.7e-17 90.9 73 68.5
Glyma.18G024700 Glycine max HOM05D003877 ORTHO05D004647 6.1e-17 90.5 73 69.9
Glyma.05G080100 Glycine max HOM05D003877 ORTHO05D004647 2.3e-16 88.6 73 65.8
Phvul.006G048800 Phaseolus vulgaris HOM05D003877 ORTHO05D004647 8.9e-16 86.7 71 63.4
Dinv21772 Davidia involucrata HOM05D003877 ORTHO05D004647 7.5e-15 83.6 49 75.5
VMungo0540G0037 Vigna mungo HOM05D003877 ORTHO05D004647 9.8e-15 83.2 49 77.6
MD01G1157500 Malus domestica HOM05D003877 ORTHO05D004647 3.7e-14 81.3 71 59.2
TAR623G0028 Trochodendron aralioides HOM05D003877 ORTHO05D004647 3.7e-14 81.3 76 60.5
Dinv10589 Davidia involucrata HOM05D003877 ORTHO05D004647 8.3e-14 80.1 76 52.6
FvH4_7g25060 Fragaria vesca HOM05D003877 ORTHO05D004647 8.3e-14 80.1 74 58.1
FAN06G1542 Fragaria x ananassa HOM05D003877 ORTHO05D004647 1.1e-13 79.7 74 58.1
Ah.10g036260 Amaranthus hybridus HOM05D003877 ORTHO05D004647 1.8e-13 79.0 70 57.1
Nitab4.5_0000789g0120 Nicotiana tabacum HOM05D003877 ORTHO05D004647 1.8e-13 79.0 49 69.4
vmacro10004 Vaccinium macrocarpon HOM05D003877 ORTHO05D004647 2.4e-13 78.6 71 54.9
CSS0042673 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 3.2e-13 78.2 71 56.3
FAN01G0819 Fragaria x ananassa HOM05D003877 ORTHO05D004647 3.2e-13 78.2 74 56.8
FAN10G2809 Fragaria x ananassa HOM05D003877 ORTHO05D004647 3.2e-13 78.2 74 56.8
Gohir.A06G161800 Gossypium hirsutum HOM05D003877 ORTHO05D004647 3.2e-13 78.2 76 55.3
Gohir.D06G167400 Gossypium hirsutum HOM05D003877 ORTHO05D004647 3.2e-13 78.2 76 55.3
QL08p063706 Quercus lobata HOM05D003877 ORTHO05D004647 3.2e-13 78.2 71 57.7
EL10Ac2g04887 Beta vulgaris HOM05D003877 ORTHO05D004647 4.1e-13 77.8 74 56.8
Prupe.2G255400 Prunus persica HOM05D003877 ORTHO05D004647 4.1e-13 77.8 49 73.5
arahy.Tifrunner.gnm1.ann1.EJG72V Arachis hypogaea HOM05D003877 ORTHO05D004647 5.4e-13 77.4 49 71.4
Aqoxy1G01313 Aquilegia oxysepala HOM05D003877 ORTHO05D004647 7.0e-13 77.0 49 67.3
Aqoxy2G01450 Aquilegia oxysepala HOM05D003877 ORTHO05D004647 7.0e-13 77.0 49 67.3
Prupe.6G130900 Prunus persica HOM05D003877 ORTHO05D004647 7.0e-13 77.0 44 77.3
arahy.Tifrunner.gnm1.ann1.EHZF9M Arachis hypogaea HOM05D003877 ORTHO05D004647 9.2e-13 76.6 72 54.2
arahy.Tifrunner.gnm1.ann1.ZCM4RK Arachis hypogaea HOM05D003877 ORTHO05D004647 9.2e-13 76.6 72 54.2
CSS0003201 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 9.2e-13 76.6 67 56.7
Gorai.010G195300 Gossypium raimondii HOM05D003877 ORTHO05D004647 1.2e-12 76.3 76 53.9
Rhsim03G0146600 Rhododendron simsii HOM05D003877 ORTHO05D004647 1.2e-12 76.3 71 56.3
TWI09G1304 Tripterygium wilfordii HOM05D003877 ORTHO05D004647 1.2e-12 76.3 76 50.0
Actinidia29719 Actinidia chinensis HOM05D003877 ORTHO05D004647 1.6e-12 75.9 75 54.7
FAN03G0426 Fragaria x ananassa HOM05D003877 ORTHO05D004647 2.0e-12 75.5 74 55.4
Nitab4.5_0003391g0120 Nicotiana tabacum HOM05D003877 ORTHO05D004647 2.0e-12 75.5 74 50.0
Lj1C785G15 Lonicera japonica HOM05D003877 ORTHO05D004647 2.7e-12 75.1 74 51.4
PSO349G0168 Papaver somniferum HOM05D003877 ORTHO05D004647 3.5e-12 74.7 49 63.3
Lalb_Chr08g0231521 Lupinus albus HOM05D003877 ORTHO05D004647 5.9e-12 73.9 49 71.4
Hund13891 Selenicereus undatus HOM05D003877 ORTHO05D004647 5.9e-12 73.9 74 48.6
GSVIVG01032758001 Vitis vinifera HOM05D003877 ORTHO05D004647 7.8e-12 73.6 76 50.0
Ciclev10031326m.g Citrus clementina HOM05D003877 ORTHO05D004647 1.0e-11 73.2 73 50.7
TWI73G0349 Tripterygium wilfordii HOM05D003877 ORTHO05D004647 1.0e-11 73.2 75 49.3
PGSC0003DMG400027120 Solanum tuberosum HOM05D003877 ORTHO05D004647 1.7e-11 72.4 76 48.7
Lsat_1_v5_gn_9_123441 Lactuca sativa HOM05D003877 ORTHO05D004647 2.9e-11 71.6 71 49.3
Thecc.10G011300 Theobroma cacao HOM05D003877 ORTHO05D004647 2.9e-11 71.6 76 50.0
TAR633G0464 Trochodendron aralioides HOM05D003877 ORTHO05D004647 2.9e-11 71.6 76 50.0
Duzib106G1591 Durio zibethinus HOM05D003877 ORTHO05D004647 3.9e-11 71.2 76 51.3
Solyc05g052480.4 Solanum lycopersicum HOM05D003877 ORTHO05D004647 3.9e-11 71.2 74 50.0
Sopen05g031010 Solanum pennellii HOM05D003877 ORTHO05D004647 3.9e-11 71.2 74 50.0
PGSC0003DMG400030038 Solanum tuberosum HOM05D003877 ORTHO05D004647 3.9e-11 71.2 76 47.4
CAN.G1268.9 Capsicum annuum HOM05D003877 ORTHO05D004647 5.0e-11 70.9 72 50.0
Eucgr.G03086 Eucalyptus grandis HOM05D003877 ORTHO05D004647 5.0e-11 70.9 73 49.3
Nitab4.5_0000058g0130 Nicotiana tabacum HOM05D003877 ORTHO05D004647 5.0e-11 70.9 78 51.3
Cpa.g.sc19.135 Carica papaya HOM05D003877 ORTHO05D004647 6.6e-11 70.5 49 61.2
Solyc06g050990.3 Solanum lycopersicum HOM05D003877 ORTHO05D004647 6.6e-11 70.5 72 50.0
Sopen06g016790 Solanum pennellii HOM05D003877 ORTHO05D004647 6.6e-11 70.5 72 50.0
AUR62012296 Chenopodium quinoa HOM05D003877 ORTHO05D004647 8.6e-11 70.1 71 49.3
Lalb_Chr23g0277091 Lupinus albus HOM05D003877 ORTHO05D004647 8.6e-11 70.1 48 68.8
Nitab4.5_0005049g0030 Nicotiana tabacum HOM05D003877 ORTHO05D004647 8.6e-11 70.1 49 63.3
AUR62022935 Chenopodium quinoa HOM05D003877 ORTHO05D004647 1.1e-10 69.7 71 49.3
Nn7g35848 Nelumbo nucifera HOM05D003877 ORTHO05D004647 1.1e-10 69.7 49 63.3
SGA_v2.0_scaffold2G01375 Striga asiatica HOM05D003877 ORTHO05D004647 1.1e-10 69.7 72 45.8
Peaxi162Scf00284g00528 Petunia axillaris HOM05D003877 ORTHO05D004647 1.5e-10 69.3 72 48.6
SGA_v2.0_scaffold60G20966 Striga asiatica HOM05D003877 ORTHO05D004647 1.5e-10 69.3 46 63.0
SGA_v2.0_scaffold85G26692 Striga asiatica HOM05D003877 ORTHO05D004647 1.5e-10 69.3 46 63.0
Oeu056656.1 Olea europaea HOM05D003877 ORTHO05D004647 1.9e-10 68.9 49 61.2
Migut.F00639 Erythranthe guttata HOM05D003877 ORTHO05D004647 2.5e-10 68.6 72 48.6
PGR142G4288 Punica granatum HOM05D003877 ORTHO05D004647 2.5e-10 68.6 49 61.2
RcHm_v2.0_Chr1g0370931 Rosa chinensis HOM05D003877 ORTHO05D004647 2.5e-10 68.6 74 51.4
vmacro17690 Vaccinium macrocarpon HOM05D003877 ORTHO05D004647 2.5e-10 68.6 70 52.9
Hund15887 Selenicereus undatus HOM05D003877 ORTHO05D004647 4.3e-10 67.8 69 52.2
MSTRG.8927 Avicennia marina HOM05D003877 ORTHO05D004647 5.6e-10 67.4 72 48.6
A06p06580 Brassica napus HOM05D003877 ORTHO05D004647 5.6e-10 67.4 49 63.3
BraA06t23872Z Brassica rapa HOM05D003877 ORTHO05D004647 5.6e-10 67.4 49 63.3
Cc02_g06060 Coffea canephora HOM05D003877 ORTHO05D004647 5.6e-10 67.4 105 40.0
DCAR_011841 Daucus carota HOM05D003877 ORTHO05D004647 7.3e-10 67.0 76 47.4
THA.LOC104810121 Tarenaya hassleriana HOM05D003877 ORTHO05D004647 7.3e-10 67.0 72 50.0
Manes.07G134500 Manihot esculenta HOM05D003877 ORTHO05D004647 9.5e-10 66.6 48 64.6
SalBow3G0419 Salvia bowleyana HOM05D003877 ORTHO05D004647 9.5e-10 66.6 46 60.9
SalBow3G1521 Salvia bowleyana HOM05D003877 ORTHO05D004647 9.5e-10 66.6 46 60.9
vmacro17691 Vaccinium macrocarpon HOM05D003877 ORTHO05D004647 9.5e-10 66.6 67 55.2
Sp1g08500 Schrenkiella parvula HOM05D003877 ORTHO05D004647 1.2e-09 66.2 49 59.2
ECA233G0637 Erigeron canadensis HOM05D003877 ORTHO05D004647 1.6e-09 65.9 49 61.2
HanXRQChr08g0221971 Helianthus annuus HOM05D003877 ORTHO05D004647 1.6e-09 65.9 76 48.7
Sc11g0005270 Simmondsia chinensis HOM05D003877 ORTHO05D004647 1.6e-09 65.9 45 64.4
SGA_v2.0_scaffold85G26702 Striga asiatica HOM05D003877 ORTHO05D004647 1.6e-09 65.9 41 65.9
GSVIVG01032757001 Vitis vinifera HOM05D003877 ORTHO05D004647 2.1e-09 65.5 76 46.1
CANSAT56G2949 Cannabis sativa HOM05D003877 ORTHO05D004647 2.8e-09 65.1 74 48.6
C05p07990 Brassica napus HOM05D003877 ORTHO05D004647 3.6e-09 64.7 46 65.2
BolC5t29551H Brassica oleracea HOM05D003877 ORTHO05D004647 3.6e-09 64.7 46 65.2
Thhalv10007485m.g Eutrema salsugineum HOM05D003877 ORTHO05D004647 3.6e-09 64.7 49 59.2
ATR0681G014 Amborella trichopoda HOM05D003877 ORTHO05D004647 4.7e-09 64.3 71 45.1
AL1G20470 Arabidopsis lyrata HOM05D003877 ORTHO05D004647 6.2e-09 63.9 49 59.2
Carub.0001s0925 Capsella rubella HOM05D003877 ORTHO05D004647 6.2e-09 63.9 49 59.2
Gohir.A05G331800 Gossypium hirsutum HOM05D003877 ORTHO05D004647 6.2e-09 63.9 76 48.7
CARHR009900 Cardamine hirsuta HOM05D003877 ORTHO05D004647 1.0e-08 63.2 49 59.2
CiPaw.02G195400 Carya illinoinensis HOM05D003877 ORTHO05D004647 1.0e-08 63.2 74 52.7
BcaC05g24837 Brassica carinata HOM05D003877 ORTHO05D004647 1.4e-08 62.8 46 63.0
Gohir.D04G070400 Gossypium hirsutum HOM05D003877 ORTHO05D004647 1.4e-08 62.8 76 48.7
AT1G09870 Arabidopsis thaliana HOM05D003877 ORTHO05D004647 1.8e-08 62.4 49 57.1
PSO801G0566 Papaver somniferum HOM05D003877 ORTHO05D004647 1.8e-08 62.4 48 58.3
ATR0068G102 Amborella trichopoda HOM05D003877 ORTHO05D004647 2.3e-08 62.0 72 44.4
Aa31LG1G5020 Aethionema arabicum HOM05D003877 ORTHO05D004647 4.0e-08 61.2 49 55.1
Manes.10G009000 Manihot esculenta HOM05D003877 ORTHO05D004647 4.0e-08 61.2 76 46.1
PSO339G0345 Papaver somniferum HOM05D003877 ORTHO05D004647 4.0e-08 61.2 48 56.2
THA.LOC104824338 Tarenaya hassleriana HOM05D003877 ORTHO05D004647 5.2e-08 60.8 49 51.0
Gorai.012G079000 Gossypium raimondii HOM05D003877 ORTHO05D004647 6.8e-08 60.5 76 47.4
BcaC07g41857 Brassica carinata HOM05D003877 ORTHO05D004647 1.5e-07 59.3 49 53.1
A09p65300 Brassica napus HOM05D003877 ORTHO05D004647 1.5e-07 59.3 49 53.1
C08p49240 Brassica napus HOM05D003877 ORTHO05D004647 1.5e-07 59.3 49 53.1
BolC8t52459H Brassica oleracea HOM05D003877 ORTHO05D004647 1.5e-07 59.3 49 53.1
Lsat_1_v5_gn_9_60880 Lactuca sativa HOM05D003877 ORTHO05D004647 3.4e-07 58.2 49 55.1
Peaxi162Scf01149g00319 Petunia axillaris HOM05D003877 ORTHO05D004647 3.4e-07 58.2 34 67.6
unitig_16.g32857 Utricularia gibba HOM05D003877 ORTHO05D004647 3.4e-07 58.2 49 53.1
BraA09t41875Z Brassica rapa HOM05D003877 ORTHO05D004647 7.5e-07 57.0 49 51.0
Sed0008918 Sechium edule HOM05D003877 ORTHO05D004647 1.3e-06 56.2 73 43.8
MELO3C018375.2 Cucumis melo HOM05D003877 ORTHO05D004647 1.7e-06 55.8 76 43.4
CDE04G1002 Ceratophyllum demersum HOM05D003877 ORTHO05D004647 3.7e-06 54.7 48 54.2
CsaV3_5G010390 Cucumis sativus L. HOM05D003877 ORTHO05D004647 3.7e-06 54.7 49 51.0
MELO3C034227.2 Cucumis melo HOM05D003877 ORTHO05D004647 8.3e-06 53.5 72 41.7


User provided reference genes

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