Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G5024 Trifolium pratense HOM05D005802 ORTHO05D006992 2.9e-146 521.9 276 100.0
Medtr4g026180 Medicago truncatula HOM05D005802 ORTHO05D006992 2.3e-122 442.6 276 85.9
Psat7g217800 Pisum sativum HOM05D005802 ORTHO05D006992 6.1e-120 434.5 275 81.8
Lj3g0015572 Lotus japonicus HOM05D005802 ORTHO05D006992 1.1e-116 423.7 273 82.8
Phvul.010G077700 Phaseolus vulgaris HOM05D005802 ORTHO05D006992 9.5e-113 410.6 273 79.1
Glyma.01G137000 Glycine max HOM05D005802 ORTHO05D006992 1.2e-112 410.2 273 79.5
arahy.Tifrunner.gnm1.ann1.I9SF1K Arachis hypogaea HOM05D005802 ORTHO05D006992 1.6e-104 383.3 278 75.9
CiPaw.13G033000 Carya illinoinensis HOM05D005802 ORTHO05D006992 2.4e-100 369.4 272 72.8
arahy.Tifrunner.gnm1.ann1.GQKS8P Arachis hypogaea HOM05D005802 ORTHO05D006992 3.2e-100 369.0 314 67.8
VMungo0331G0187 Vigna mungo HOM05D005802 ORTHO05D006992 4.1e-100 368.6 248 79.0
GSVIVG01027639001 Vitis vinifera HOM05D005802 ORTHO05D006992 2.0e-99 366.3 271 72.3
Ca_02431_v3 Cicer arietinum L. HOM05D005802 ORTHO05D006992 3.9e-98 362.1 259 77.2
Manes.05G048500 Manihot esculenta HOM05D005802 ORTHO05D006992 5.6e-97 358.2 269 70.3
Haze_02673 Corylus avellana HOM05D005802 ORTHO05D006992 3.6e-96 355.5 275 69.8
MD02G1209900 Malus domestica HOM05D005802 ORTHO05D006992 6.2e-96 354.8 268 69.0
COL.COLO4_12497 Corchorus olitorius HOM05D005802 ORTHO05D006992 1.1e-95 354.0 271 69.0
Potri.014G060000 Populus trichocarpa HOM05D005802 ORTHO05D006992 2.3e-95 352.8 269 70.6
THA.LOC104802463 Tarenaya hassleriana HOM05D005802 ORTHO05D006992 2.3e-95 352.8 274 70.1
Eucgr.D02489 Eucalyptus grandis HOM05D005802 ORTHO05D006992 5.2e-95 351.7 271 67.9
QL04p039160 Quercus lobata HOM05D005802 ORTHO05D006992 5.2e-95 351.7 274 68.6
Thecc.01G381900 Theobroma cacao HOM05D005802 ORTHO05D006992 6.8e-95 351.3 268 68.7
TAR375G0577 Trochodendron aralioides HOM05D005802 ORTHO05D006992 8.9e-95 350.9 269 69.5
Atru.chr5.259 Acer truncatum HOM05D005802 ORTHO05D006992 1.2e-94 350.5 269 71.4
Nn6g34003 Nelumbo nucifera HOM05D005802 ORTHO05D006992 2.6e-94 349.4 271 70.1
CANSAT56G0664 Cannabis sativa HOM05D005802 ORTHO05D006992 3.4e-94 349.0 273 69.2
TWI23G1076 Tripterygium wilfordii HOM05D005802 ORTHO05D006992 3.4e-94 349.0 273 69.2
Ciclev10021687m.g Citrus clementina HOM05D005802 ORTHO05D006992 5.8e-94 348.2 271 69.4
Duzib133G1160 Durio zibethinus HOM05D005802 ORTHO05D006992 7.5e-94 347.8 268 68.7
Cpa.g.sc49.162 Carica papaya HOM05D005802 ORTHO05D006992 2.2e-93 346.3 271 67.9
PGR042G3152 Punica granatum HOM05D005802 ORTHO05D006992 2.2e-93 346.3 272 67.6
Sabra14G0043900 Salix brachista HOM05D005802 ORTHO05D006992 4.9e-93 345.1 278 68.3
AUR62013665 Chenopodium quinoa HOM05D005802 ORTHO05D006992 1.1e-92 344.0 272 65.1
Prupe.2G138600 Prunus persica HOM05D005802 ORTHO05D006992 1.4e-92 343.6 271 67.5
Actinidia12678 Actinidia chinensis HOM05D005802 ORTHO05D006992 2.4e-92 342.8 269 66.9
Cfa011175 Carpinus fangiana HOM05D005802 ORTHO05D006992 2.4e-92 342.8 264 68.9
Rhsim01G0150000 Rhododendron simsii HOM05D005802 ORTHO05D006992 4.1e-92 342.0 271 66.8
Gohir.A12G094400 Gossypium hirsutum HOM05D005802 ORTHO05D006992 9.2e-92 340.9 271 66.8
Gohir.D12G097200 Gossypium hirsutum HOM05D005802 ORTHO05D006992 9.2e-92 340.9 271 66.8
CSS0000774 Camellia sinensis var. sinensis HOM05D005802 ORTHO05D006992 3.5e-91 339.0 271 67.2
Gorai.008G105800 Gossypium raimondii HOM05D005802 ORTHO05D006992 3.5e-91 339.0 271 66.8
Sc02g0002770 Simmondsia chinensis HOM05D005802 ORTHO05D006992 1.3e-90 337.0 271 66.4
CARHR171060 Cardamine hirsuta HOM05D005802 ORTHO05D006992 2.3e-90 336.3 273 67.0
FAN06G1875 Fragaria x ananassa HOM05D005802 ORTHO05D006992 3.9e-90 335.5 288 63.9
AT3G60660 Arabidopsis thaliana HOM05D005802 ORTHO05D006992 8.6e-90 334.3 271 66.4
Aa31LG10G14950 Aethionema arabicum HOM05D005802 ORTHO05D006992 1.5e-89 333.6 274 65.3
AL5G42970 Arabidopsis lyrata HOM05D005802 ORTHO05D006992 2.5e-89 332.8 271 66.1
Thhalv10006164m.g Eutrema salsugineum HOM05D005802 ORTHO05D006992 1.6e-88 330.1 271 65.3
FAN06G3617 Fragaria x ananassa HOM05D005802 ORTHO05D006992 1.6e-88 330.1 278 65.5
C08p35600 Brassica napus HOM05D005802 ORTHO05D006992 2.1e-88 329.7 273 64.1
BcaC07g40584 Brassica carinata HOM05D005802 ORTHO05D006992 2.8e-88 329.3 272 63.6
Sp5g02580 Schrenkiella parvula HOM05D005802 ORTHO05D006992 3.6e-88 328.9 271 64.6
FAN10G1300 Fragaria x ananassa HOM05D005802 ORTHO05D006992 6.2e-88 328.2 275 66.2
RcHm_v2.0_Chr5g0028911 Rosa chinensis HOM05D005802 ORTHO05D006992 6.2e-88 328.2 277 64.6
BolC8t51149H Brassica oleracea HOM05D005802 ORTHO05D006992 1.4e-87 327.0 271 64.2
AUR62004168 Chenopodium quinoa HOM05D005802 ORTHO05D006992 5.2e-87 325.1 272 64.0
A09p52850 Brassica napus HOM05D005802 ORTHO05D006992 1.2e-86 323.9 273 63.0
HanXRQChr03g0088101 Helianthus annuus HOM05D005802 ORTHO05D006992 1.2e-86 323.9 274 64.6
ECA234G0875 Erigeron canadensis HOM05D005802 ORTHO05D006992 1.5e-86 323.6 269 63.9
Hund27376 Selenicereus undatus HOM05D005802 ORTHO05D006992 1.5e-86 323.6 272 62.9
FAN10G3200 Fragaria x ananassa HOM05D005802 ORTHO05D006992 3.4e-86 322.4 278 64.7
PSO017G7043 Papaver somniferum HOM05D005802 ORTHO05D006992 3.4e-86 322.4 277 62.1
DCAR_025098 Daucus carota HOM05D005802 ORTHO05D006992 4.4e-86 322.0 274 62.4
FAN03G1851 Fragaria x ananassa HOM05D005802 ORTHO05D006992 4.4e-86 322.0 278 64.4
Lsat_1_v5_gn_4_44621 Lactuca sativa HOM05D005802 ORTHO05D006992 7.6e-86 321.2 271 64.2
PSO478G1061 Papaver somniferum HOM05D005802 ORTHO05D006992 2.2e-85 319.7 277 61.4
Peaxi162Scf01052g00014 Petunia axillaris HOM05D005802 ORTHO05D006992 2.2e-85 319.7 271 64.9
ClCG09G008930 Citrullus lanatus HOM05D005802 ORTHO05D006992 5.4e-84 315.1 271 62.0
CAN.G106.25 Capsicum annuum HOM05D005802 ORTHO05D006992 2.1e-83 313.2 271 64.2
FAN01G2984 Fragaria x ananassa HOM05D005802 ORTHO05D006992 2.7e-83 312.8 288 61.5
MSTRG.17165 Avicennia marina HOM05D005802 ORTHO05D006992 4.6e-83 312.0 269 62.8
Dinv44124 Davidia involucrata HOM05D005802 ORTHO05D006992 1.3e-82 310.5 258 65.5
Solyc05g050900.4 Solanum lycopersicum HOM05D005802 ORTHO05D006992 1.3e-82 310.5 271 62.7
Aqoxy7G00743 Aquilegia oxysepala HOM05D005802 ORTHO05D006992 2.3e-82 309.7 270 63.7
PGSC0003DMG400007022 Solanum tuberosum HOM05D005802 ORTHO05D006992 3.0e-82 309.3 271 62.4
Carub.0005s2750 Capsella rubella HOM05D005802 ORTHO05D006992 3.9e-82 308.9 262 63.7
Sopen05g029380 Solanum pennellii HOM05D005802 ORTHO05D006992 5.1e-82 308.5 271 62.4
Migut.B01600 Erythranthe guttata HOM05D005802 ORTHO05D006992 2.5e-81 306.2 269 61.3
CsaV3_7G026130 Cucumis sativus L. HOM05D005802 ORTHO05D006992 4.3e-81 305.4 269 61.7
Sed0027573 Sechium edule HOM05D005802 ORTHO05D006992 4.3e-81 305.4 273 60.4
FvH4_7g11150 Fragaria vesca HOM05D005802 ORTHO05D006992 1.6e-80 303.5 247 66.8
BraA09t40717Z Brassica rapa HOM05D005802 ORTHO05D006992 2.4e-79 299.7 338 51.5
SalBow5G5068 Salvia bowleyana HOM05D005802 ORTHO05D006992 3.4e-78 295.8 269 59.9
Nitab4.5_0001329g0060 Nicotiana tabacum HOM05D005802 ORTHO05D006992 2.9e-77 292.7 259 63.3
Carub.0005s2739 Capsella rubella HOM05D005802 ORTHO05D006992 8.4e-77 291.2 262 61.5
Cc02_g24280 Coffea canephora HOM05D005802 ORTHO05D006992 1.4e-76 290.4 274 58.4
vmacro21028 Vaccinium macrocarpon HOM05D005802 ORTHO05D006992 2.7e-75 286.2 271 58.7
Actinidia28320 Actinidia chinensis HOM05D005802 ORTHO05D006992 4.6e-75 285.4 223 65.9
Os07g0484500 Oryza sativa ssp. japonica HOM05D005802 ORTHO05D006992 3.0e-74 282.7 274 55.5
ATR1153G072 Amborella trichopoda HOM05D005802 ORTHO05D006992 5.6e-73 278.5 274 54.7
Zm00001eb321530 Zea mays HOM05D005802 ORTHO05D006992 6.2e-72 275.0 271 54.2
Lalb_Chr12g0208021 Lupinus albus HOM05D005802 ORTHO05D006992 5.3e-71 271.9 185 77.3
SGA_v2.0_scaffold153G36973 Striga asiatica HOM05D005802 ORTHO05D006992 3.4e-70 269.2 246 58.5
Nitab4.5_0005050g0030 Nicotiana tabacum HOM05D005802 ORTHO05D006992 8.4e-69 264.6 268 58.2
CDE04G3422 Ceratophyllum demersum HOM05D005802 ORTHO05D006992 1.8e-66 256.9 289 52.2
TAR375G0251 Trochodendron aralioides HOM05D005802 ORTHO05D006992 1.6e-64 250.4 192 67.7
EL10Ac1g00841 Beta vulgaris HOM05D005802 ORTHO05D006992 1.1e-63 247.7 272 51.8
Lj7A534G38 Lonicera japonica HOM05D000908 ORTHO05D000789 3.9e-58 229.2 246 54.1
Oeu051925.1 Olea europaea HOM05D005802 ORTHO05D006992 6.2e-56 221.9 247 52.2
RcHm_v2.0_Chr1g0349231 Rosa chinensis HOM05D005802 ORTHO05D006992 1.4e-55 220.7 197 58.9
Mapoly0010s0189 Marchantia polymorpha HOM05D005802 ORTHO05D006992 9.3e-52 208.0 264 46.2
Pp3c6_12030 Physcomitrium patens HOM05D005802 ORTHO05D006992 2.1e-51 206.8 280 42.9
AagrBONN_evm.TU.Sc2ySwM_368.1567 Anthoceros agrestis HOM05D005802 ORTHO05D006992 4.3e-49 199.1 271 41.7
Oeu051926.1 Olea europaea HOM05D005802 ORTHO05D006992 1.6e-48 197.2 139 69.1
MELO3C021033.2 Cucumis melo HOM05D005802 ORTHO05D006992 5.9e-46 188.7 198 55.1
SMO347G0664 Selaginella moellendorffii HOM05D005802 ORTHO05D006992 9.4e-44 181.4 230 42.6
RcHm_v2.0_Chr1g0349201 Rosa chinensis HOM05D005802 ORTHO05D006992 6.7e-42 175.3 341 37.8
Actinidia33479 Actinidia chinensis HOM05D005802 ORTHO05D006992 1.1e-36 157.9 132 61.4
FAN03G0906 Fragaria x ananassa HOM05D005802 ORTHO05D006992 3.2e-36 156.4 115 72.2
Ah.05g173880 Amaranthus hybridus HOM05D005802 ORTHO05D006992 4.2e-36 156.0 108 74.1
FAN03G0348 Fragaria x ananassa HOM05D005802 ORTHO05D006992 7.2e-36 155.2 115 71.3
Glyma.03G031466 Glycine max HOM05D005802 ORTHO05D006992 1.4e-31 141.0 84 81.0
RcHm_v2.0_Chr1g0349251 Rosa chinensis HOM05D005802 ORTHO05D006992 3.8e-29 132.9 84 77.4
Ah.05g173870 Amaranthus hybridus HOM05D005802 ORTHO05D006992 1.2e-27 127.9 140 52.1
Oeu055514.1 Olea europaea HOM05D005802 ORTHO05D006992 2.6e-25 120.2 149 51.0
SHI22578 Sapria himalayana HOM05D005802 ORTHO05D006992 9.7e-25 118.2 90 66.7
RcHm_v2.0_Chr1g0349241 Rosa chinensis HOM05D005802 ORTHO05D006992 2.8e-24 116.7 110 59.1
CBR_g48776 Chara braunii HOM05D005802 ORTHO05D006992 8.2e-24 115.2 242 30.6
Cc00_g05160 Coffea canephora HOM05D005802 ORTHO05D006992 8.2e-24 115.2 108 57.4
Hma1.2p1_0072F.1_g038280 Hydrangea macrophylla HOM05D005802 ORTHO05D006992 4.1e-23 112.8 107 61.7
Lalb_Chr12g0208011 Lupinus albus HOM05D005802 ORTHO05D006992 7.0e-23 112.1 76 84.2
RcHm_v2.0_Chr1g0349161 Rosa chinensis HOM05D005802 ORTHO05D006992 7.0e-23 112.1 149 49.7
SHI22577 Sapria himalayana HOM05D005802 ORTHO05D006992 5.9e-22 109.0 109 54.1
Cre16.g672500 Chlamydomonas reinhardtii HOM05D005802 ORTHO05D006992 1.0e-21 108.2 273 31.9
Cc00_g05150 Coffea canephora HOM05D005802 ORTHO05D006992 1.3e-21 107.8 110 53.6
FAN10G4230 Fragaria x ananassa HOM05D005802 ORTHO05D006992 1.2e-19 101.3 58 77.6
Oeu045806.1 Olea europaea HOM05D005802 ORTHO05D006992 3.6e-19 99.8 71 71.8
Dinv44127 Davidia involucrata HOM05D005802 ORTHO05D006992 2.3e-18 97.1 105 51.4
ECA240G2706 Erigeron canadensis HOM05D001255 ORTHO05D001246 1.2e-17 94.7 65 67.7
RcHm_v2.0_Chr1g0349171 Rosa chinensis HOM05D005802 ORTHO05D006992 2.6e-17 93.6 56 82.1
C04p32020 Brassica napus HOM05D010895 ORTHO05D012939 7.5e-17 92.0 116 48.3
BolC4t24754H Brassica oleracea HOM05D005802 ORTHO05D006992 1.8e-15 87.4 103 51.5
CARHR170760 Cardamine hirsuta HOM05D005802 ORTHO05D006992 3.1e-15 86.7 69 65.2
Glyma.03G031532 Glycine max HOM05D005802 ORTHO05D006992 6.5e-13 79.0 82 57.3
SGA_v2.0_scaffold123G33454 Striga asiatica HOM05D000451 ORTHO05D000351 3.7e-08 63.2 98 40.8
arahy.Tifrunner.gnm1.ann1.LXE9FZ Arachis hypogaea HOM05D005802 ORTHO05D006992 1.2e-06 58.2 37 70.3


User provided reference genes

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